(1) Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G (2012).
Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites.
Nucleic Acids Research 1-12. PDF PMID: 22684627
HATRIC CODE(2) Understanding visual population codes -- towards a common multivariate framework for cell recording and functional imaging
(3) Kreiman G (2004)
Kriegeskorte and Kreiman. MIT PRESS 2011.
Link to CODE
Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes.
Nucleic Acids Research, 32:2889-2900. PDF. Supplementary InformationPMID: 15155858
CISREGUL CODE(4) Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G,
Cooke MP, Walker JR, Hogenesch JB (2004)
A gene atlas of the mouse and human protein-encoding transcriptomes. PNAS, 101:6062-6067. PDF
Gene expression atlas in mouse and humans (PNAS 2004 101:6062-6067)6) Spiker (spike sorting program)
Genebytes