Software and Databases

You must agree with the terms and conditions specified in this link before downloading any material from the Kreiman lab web site. Downloading any material from the Kreiman Lab web site implies your agreement with this license.

Singeretal2014Singer and Kreiman. Asynchrony disrupts object recognition. Journal of Vision (2014). PDF. Visual recognition was significantly disrupted by asynchronies of approximately 30 ms, suggesting that spatiotemporal integration begins to break down with even small deviations from simultaneity.

Hembergetal2012Hemberg et al. Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding site. Nucleic Acids Research (2012). PDF. A method to build putative transcripts from high-throughput total RNA-seq data. (HATRIC)


BookMIT2011 Kriegeskorte and Kreiman. Understanding visual population codes MIT PRESS (2011). Towards a common multivariate framework for cell recording and functional imaging.




BookMIT2011 Kreiman. Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes Nucleic Acids Research (2004). PDF. A method for de novo discovery of gene regulatory sequences for sets of co-regulated genes. (CISREGUL)

  • Su et al. PNAS 2004

  • Zirlinger et al, PNAS 2001 (Gene Screening)
  • Spike sorting program (Spiker)

    READ THIS FIRST BEFORE DOWNLOADING FROM THIS WEB SITE: All code is provided as is. You are welcome to send email to the main authors with questions and queries about the code. Note that due to the volume and nature of these emails, in most cases, we will not be able to answer them. Our intent in providing the code is to push the frontiers of science, help people reproduce results and improve upon them. However, we are not a software development company and we lack the resources to provide technical support. Note also that you are responsible for the use and misuse of the code provided here. Downloading any material from this web site implies your agreement with the rules specified here.

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