Software and Databases

Singeretal2014Singer and Kreiman. Asynchrony disrupts object recognition. Journal of Vision (2014). PDF. Visual recognition was significantly disrupted by asynchronies of approximately 30 ms, suggesting that spatiotemporal integration begins to break down with even small deviations from simultaneity.

Hembergetal2012Hemberg et al. Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding site. Nucleic Acids Research (2012). PDF. A method to build putative transcripts from high-throughput total RNA-seq data. (HATRIC)

 

BookMIT2011 Kriegeskorte and Kreiman. Understanding visual population codes MIT PRESS (2011). Towards a common multivariate framework for cell recording and functional imaging.

 

 

 

BookMIT2011 Kreiman. Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes Nucleic Acids Research (2004). PDF. A method for de novo discovery of gene regulatory sequences for sets of co-regulated genes. (CISREGUL)


  • Su et al. PNAS 2004

  • Zirlinger et al, PNAS 2001 (Gene Screening)
  • Spike sorting program (Spiker)

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