| Internal ID | Transfac Name | Transfac ID | Transfac symbol | GeneID | Symbol |
| 1 | V_PAX5_02 | M00144 | BSAP | 5079 | PAX5 |
| 2 | V_PAX5_01 | M00143 | BSAP | 5079 | PAX5 |
| 5 | V_CEBP_01 | M00159 | C/EBP | 1050 | CEBPA |
| 7 | V_FOXJ2_02 | M00423 | FOXJ2 | 55810 | FOXJ2 |
| 8 | V_FOXJ2_01 | M00422 | FOXJ2 | 55810 | FOXJ2 |
| 10 | V_CEBPB_02 | M00117 | C/EBPbeta | 1051 | CEBPB |
| 13 | V_CEBPB_01 | M00109 | C/EBPbeta | 1051 | CEBPB |
| 16 | V_TAL1ALPHAE47_01 | M00066 | Tal-1alpha/E47 | 6886 | TAL1 |
| 26 | V_TST1_01 | M00133 | Tst-1 | 8030 | CCDC6 |
| 27 | V_RORA1_01 | M00156 | RORalpha1 | 6095 | RORA |
| 29 | V_AP2_Q6 | M00189 | AP-2 | 7022 | TFAP2C |
| 30 | V_CDPCR1_01 | M00104 | CDP CR1 | 1523 | CUTL1 |
| 32 | V_CART1_01 | M00416 | Cart-1 | 9607 | CART |
| 37 | V_HNF1_01 | M00132 | HNF-1 | 6927 | TCF1 |
| 38 | V_E2F_02 | M00050 | E2F | 1870 | E2F2 |
| 40 | V_MEF2_04 | M00233 | MEF-2 | 4205 | MEF2A |
| 41 | V_MEF2_03 | M00232 | MEF-2 | 4205 | MEF2A |
| 43 | V_MEF2_01 | M00006 | MEF-2 | 4205 | MEF2A |
| 46 | V_SREBP1_02 | M00221 | SREBP-1 | 6720 | SREBF1 |
| 49 | V_NFY_Q6 | M00185 | NF-Y | 4802 | NFYC |
| 51 | V_LMO2COM_02 | M00278 | Lmo2 complex | 4005 | LMO2 |
| 53 | V_STAT3_01 | M00225 | STAT3 | 6774 | STAT3 |
| 56 | V_MEIS1_01 | M00419 | MEIS1 | 4211 | MEIS1 |
| 58 | V_RFX1_02 | M00281 | RFX1 | 5989 | RFX1 |
| 59 | V_RFX1_01 | M00280 | RFX1 | 5989 | RFX1 |
| 60 | V_PAX6_01 | M00097 | Pax-6 | 5080 | PAX6 |
| 65 | V_TATA_01 | M00252 | TATA | 6908 | TBP |
| 67 | V_NFKAPPAB65_01 | M00052 | NF-kappaB (p65) | 5970 | RELA |
| 68 | V_MYOGNF1_01 | M00056 | myogenin / NF-1 | 4763 | NF1 |
| 69 | V_EGR1_01 | M00243 | Egr-1 | 1958 | EGR1 |
| 74 | V_NFY_C | M00209 | NF-Y | 4801 | NFYB |
| 79 | V_USF_Q6 | M00187 | USF | 7391 | USF1 |
| 81 | V_ZID_01 | M00085 | ZID | 10773 | ZNF482 |
| 82 | V_PBX1_02 | M00124 | Pbx1b | 5087 | PBX1 |
| 83 | V_PBX1_01 | M00096 | Pbx-1 | 5087 | PBX1 |
| 84 | V_YY1_02 | M00069 | YY1 | 7528 | YY1 |
| 85 | V_YY1_01 | M00059 | YY1 | 7528 | YY1 |
| 99 | V_COUP_01 | M00158 | COUP-TF / HNF-4 | 3172 | HNF4A |
| 102 | V_NFAT_Q6 | M00302 | NF-AT | 4773 | NFATC2 |
| 105 | V_MYB_Q6 | M00183 | c-Myb | 4602 | MYB |
| 107 | V_E4BP4_01 | M00045 | E4BP4 | -1 | none |
| 108 | V_SOX9_B1 | M00410 | SOX-9 | 6662 | SOX9 |
| 110 | V_CEBP_C | M00201 | C/EBP | 1050 | CEBPA |
| 111 | V_P53_02 | M00272 | p53 | 7157 | TP53 |
| 113 | V_CREL_01 | M00053 | c-Rel | 5966 | REL |
| 116 | V_ATF_01 | M00017 | ATF | 5328 | PLAU |
| 121 | V_SP1_Q6 | M00196 | Sp1 | 6667 | SP1 |
| 122 | V_MEIS1A/HOXA9_01 | M00420 | MEIS1A/HOXA9 | 3205 | HOXA9 |
| 125 | V_MIF1_01 | M00279 | MIF-1 | 9709 | HERPUD1 |
| 128 | V_HSF1_01 | M00146 | HSF1 | 3297 | HSF1 |
| 134 | V_AP4_Q6 | M00176 | AP-4 | 29803 | REPIN1 |
| 135 | V_AP1FJ_Q2 | M00172 | AP-1 | 3725 | JUN |
| 136 | V_CDPCR3_01 | M00105 | CDP CR3 | 1523 | CUTL1 |
| 138 | V_FREAC3_01 | M00291 | Freac-3 | 2296 | FOXC1 |
| 140 | V_HFH3_01 | M00289 | HFH-3 | 2299 | FOXI1 |
| 143 | V_OCT1_Q6 | M00195 | "OCT1" | 5451 | POU2F1 |
| 144 | V_IRF1_01 | M00062 | IRF-1 | 3659 | IRF1 |
| 147 | V_GATA2_01 | M00076 | GATA-2 | 2624 | GATA2 |
| 150 | V_NRSF_01 | M00256 | NRSF | 5978 | REST |
| 153 | V_CDPCR3HD_01 | M00106 | CDP CR3+HD | 1523 | CUTL1 |
| 155 | V_TCF11MAFG_01 | M00284 | TCF11/MafG | 4097 | MAFG |
| 156 | V_HNF1_C | M00206 | HNF-1 | 6927 | TCF1 |
| 159 | V_ARNT_01 | M00236 | Arnt | 405 | ARNT |
| 160 | V_AREB6_04 | M00415 | AREB6 | 6935 | TCF8 |
| 161 | V_AREB6_03 | M00414 | AREB6 | 6935 | TCF8 |
| 162 | V_AREB6_02 | M00413 | AREB6 | 6935 | TCF8 |
| 163 | V_AREB6_01 | M00412 | AREB6 | 6935 | TCF8 |
| 176 | V_PAX2_01 | M00098 | Pax-2 | 5076 | PAX2 |
| 181 | V_USF_02 | M00122 | USF | 7391 | USF1 |
| 183 | V_FREAC4_01 | M00292 | Freac-4 | 2297 | FOXD1 |
| 185 | V_SRF_Q6 | M00186 | SRF | 6722 | SRF |
| 187 | V_HNF4_01 | M00134 | HNF-4 | 3172 | HNF4A |
| 193 | V_FOXD3_01 | M00130 | FOXD3 | 27022 | FOXD3 |
| 194 | V_GATA3_01 | M00077 | GATA-3 | 2625 | GATA3 |
| 211 | V_ISRE_01 | M00258 | ISRE | 6773 | STAT2 |
| 215 | V_GRE_C | M00205 | GR | 2908 | NRC1 |
| 217 | V_TCF11_01 | M00285 | TCF11 | 4779 | NFE2L1 |
| 219 | V_GR_Q6 | M00192 | GR | 2908 | NRC1 |
| 224 | V_CEBP_Q2 | M00190 | C/EBP | 1050 | CEBPA |
| 226 | V_CHOP_01 | M00249 | CHOP-C/EBPalpha | 1050 | CEBPA |
| 228 | V_TAXCREB_02 | M00115 | Tax/CREB | 1385 | CREB1 |
| 229 | V_SP1_01 | M00008 | Sp1 | 6667 | SP1 |
| 230 | V_TAXCREB_01 | M00114 | Tax/CREB | 1385 | CREB1 |
| 234 | V_MYCMAX_02 | M00123 | c-Myc/Max | 4609 | MYC |
| 235 | V_MYCMAX_01 | M00118 | c-Myc/Max | 4609 | MYC |
| 243 | V_CDP_02 | M00102 | CDP | 1523 | CUTL1 |
| 244 | V_CDP_01 | M00095 | CDP | 1523 | CUTL1 |
| 246 | V_XBP1_01 | M00251 | XBP-1 | 7494 | XBP1 |
| 249 | V_OCT1_07 | M00248 | "OCT1" | 5451 | POU2F1 |
| 250 | V_OCT1_06 | M00162 | "OCT1" | 5451 | POU2F1 |
| 251 | V_AML1_01 | M00271 | AML-1a | 861 | RUNX1 |
| 252 | V_OCT1_05 | M00161 | "OCT1" | 5451 | POU2F1 |
| 253 | V_OCT1_04 | M00138 | "OCT1" | 5451 | POU2F1 |
| 254 | V_OCT1_03 | M00137 | "OCT1" | 5451 | POU2F1 |
| 255 | V_OCT1_02 | M00136 | "OCT1" | 5451 | POU2F1 |
| 261 | V_NF1_Q6 | M00193 | NF-1 | 4763 | NF1 |
| 265 | V_ARP1_01 | M00155 | ARP-1 | 10121 | ACTR1A |
| 270 | V_ER_Q6 | M00191 | ER | 2099 | ESR1 |
| 272 | V_AP1_C | M00199 | AP-1 | 10143 | YAP1 |
| 284 | V_HAND1E47_01 | M00222 | Hand1/E47 | 9421 | HAND1 |
| 286 | V_NKX61_01 | M00424 | NKX6-1 | 4825 | NKX6-1 |
| 287 | V_CREBP1CJUN_01 | M00041 | CRE-BP1/c-Jun | 3725 | JUN |
| 295 | V_TGIF_01 | M00418 | TGIF | 7050 | TGIF |
| 308 | V_SRY_01 | M00148 | SRY | 6736 | SRY |
| 310 | V_NFE2_01 | M00037 | NF-E2 | 4778 | NFE2 |
| 311 | V_RREB1_01 | M00257 | RREB-1 | 6239 | RREB1 |
| 313 | V_ELK1_02 | M00025 | Elk-1 | 2002 | ELK1 |
| 314 | V_ELK1_01 | M00007 | Elk-1 | 2002 | ELK1 |
| 317 | V_P300_01 | M00033 | p300 | 2033 | EP300 |
| 318 | V_AHRARNT_02 | M00237 | AhR/Arnt | 405 | ARNT |
| 319 | V_BRN2_01 | M00145 | Brn-2 | 5454 | POU3F2 |
| 320 | V_AHRARNT_01 | M00235 | AhR/Arnt | 405 | ARNT |
| 321 | V_MZF1_02 | M00084 | MZF1 | 7593 | ZNF42 |
| 322 | V_MZF1_01 | M00083 | MZF1 | 7593 | ZNF42 |
| 17 | V_S8_01 | M00099 | S8 | 51450 | PRRX2 |
| 23 | V_CMYB_01 | M00004 | c-Myb | 4602 | MYB |
| 25 | V_AHR_01 | M00139 | AhR | 196 | AHR |
| 55 | V_CP2_01 | M00072 | CP2 | 7024 | TFCP2 |
| 75 | V_BRACH_01 | M00150 | Brachyury | 6862 | HGNC |
| 93 | V_NMYC_01 | M00055 | N-Myc | 4613 | MYCN |
| 98 | V_GATA1_01 | M00075 | GATA-1 | 2623 | GATA1 |
| 133 | V_SOX5_01 | M00042 | Sox-5 | 6660 | SOX5 |
| 158 | V_IK1_01 | M00086 | Ik-1 | 3611 | ILK |
| 173 | V_LYF1_01 | M00141 | Lyf-1 | 10320 | ZNFN1A1 |
| 175 | V_HOXA3_01 | M00395 | HOXA3 | 3200 | HOXA3 |
| 208 | V_HOX13_01 | M00023 | Hox-1.3 | 3202 | HOXA5 |
| 216 | V_EVI1_06 | M00011 | Evi-1 | 2122 | EVI1 |
| 227 | V_PAX3_01 | M00360 | Pax-3 | 5077 | PAX3 |
| 236 | V_MSX1_01 | M00394 | Msx-1 | 4487 | MSX1 |
| 242 | V_PPARA_01 | M00242 | PPARalpha/RXR-alpha | 5465 | PPARA |
| 259 | V_NKX25_02 | M00241 | Nkx2-5 | 1482 | NKX2-5 |
| 260 | V_NKX25_01 | M00240 | Nkx2-5 | 1482 | NKX2-5 |
| 279 | V_EN1_01 | M00396 | En-1 | 2019 | EN1 |
| 280 | V_PAX4_04 | M00380 | Pax-4 | 5078 | PAX4 |
| 281 | V_PAX4_03 | M00378 | Pax-4 | 5078 | PAX4 |
| 282 | V_PAX4_02 | M00377 | Pax-4 | 5078 | PAX4 |
| 283 | V_PAX4_01 | M00373 | Pax-4 | 5078 | PAX4 |
| 288 | V_GKLF_01 | M00286 | GKLF | 9314 | KLF4 |
| 301 | V_COMP1_01 | M00057 | COMP1 | -1 | none |