List of hs/mm motifs |
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TRANSFAC
name |
Motif Length |
TRANSFAC Identifier |
TF name |
consensus sequence |
most likely sequence |
|
V_PAX5_02 |
28 |
M00144 |
BSAP |
vrhvdrdndbbynrrkckkrwcvrynvh |
aaacagatacctgaagcgtgaccataca |
|
|
V_PAX5_01 |
28 |
M00143 |
BSAP |
bhnnnrnbcanbsndknrdvvmvdvhnb |
tcgaggcgcaatgatgcgtagccgcccc |
|
|
V_CEBP_01 |
13 |
M00159 |
C/EBP |
nvddtkbwdwnnn |
tatttggtaaggc |
|
V_FOXJ2_02 |
14 |
M00423 |
FOXJ2 |
vhmwyaayrbykdn |
ataataatattttt |
|
V_FOXJ2_01 |
18 |
M00422 |
FOXJ2 |
hhnhmdryaaayanhnnn |
ttataaataaacattcaa |
|
V_CEBPB_02 |
14 |
M00117 |
C/EBPbeta |
nnnttrsnhmannn |
atattgcacaactc |
|
V_CEBPB_01 |
14 |
M00109 |
C/EBPbeta |
dnvtkddkhaadnn |
agattgtgcaatgt |
|
V_TAL1ALPHAE47_01 |
16 |
M00066 |
Tal-1alpha/E47 |
dnnrmcakatkkynnn |
tcgaacagatggtgac |
|
V_TST1_01 |
15 |
M00133 |
Tst-1 |
nnbvwwtwhvvvbdn |
gaggaattaaaatac |
|
V_RORA1_01 |
13 |
M00156 |
RORalpha1 |
dnwwndrkktcah |
atatcaaggtcat |
|
V_AP2_Q6 |
12 |
M00189 |
AP-2 |
vdyccvvvkvms |
cgcccgccggcg |
|
V_CDPCR1_01 |
10 |
M00104 |
CDP CR1 |
natyratbss |
aatcgatcgc |
|
V_CART1_01 |
18 |
M00416 |
Cart-1 |
nvntaatknnhattrbbn |
aactaattaccattatcg |
|
V_HNF1_01 |
15 |
M00132 |
HNF-1 |
dkttawtnwwydnhn |
ggttaataattacca |
|
V_E2F_02 |
8 |
M00050 |
E2F |
tttssckc |
tttcgcgc |
|
V_MEF2_04 |
22 |
M00233 |
MEF-2 |
nntkttdctawaaatakawhhn |
actgttactaaaaatagaaact |
|
V_MEF2_03 |
22 |
M00232 |
MEF-2 |
nnnndwdctwwaaatakhhhnn |
tgtggttctaaaaatagaacaa |
|
V_MEF2_01 |
16 |
M00006 |
MEF-2 |
bkytaaaaataacyyy |
ctctaaaaataactct |
|
V_SREBP1_02 |
11 |
M00221 |
SREBP-1 |
brtcaccccac |
gatcaccccac |
|
V_NFY_Q6 |
11 |
M00185 |
NF-Y |
bvrccaatvdb |
taaccaatcac |
|
V_LMO2COM_02 |
9 |
M00278 |
Lmo2 complex |
nhkatavbs |
cagataggg |
|
V_STAT3_01 |
21 |
M00225 |
STAT3 |
nbbbrwttccskkaarysnnn |
tggcatttcccggaaatgatt |
|
V_MEIS1_01 |
12 |
M00419 |
MEIS1 |
nhntkacasnnn |
cagtgacaggtc |
|
V_RFX1_02 |
18 |
M00281 |
RFX1 |
nnvkhrcnnhrkyaacnn |
tagtagccatggcaacaa |
|
V_RFX1_01 |
17 |
M00280 |
RFX1 |
nnvkhrcnhrkyaacnn |
tagtagcctggcaacaa |
|
V_PAX6_01 |
21 |
M00097 |
Pax-6 |
nhnnttymykswtsrntkvnn |
aattttcacgcatgagttcac |
|
V_TATA_01 |
15 |
M00252 |
TATA |
vyatawadvnvnnnn |
gtataaaaggcgggg |
|
V_NFKAPPAB65_01 |
10 |
M00052 |
NF-kappaB (p65) |
bkkrnwtycc |
gggaatttcc |
|
V_MYOGNF1_01 |
29 |
M00056 |
myogenin / NF-1 |
hrbhnbybbnndykkkhdnbbnsymddnh |
cacctgttcaatttggcacggagccaaca |
|
|
V_EGR1_01 |
12 |
M00243 |
Egr-1 |
wtkckkrkkhkk |
atgcgtgggcgt |
|
V_NFY_C |
14 |
M00209 |
NF-Y |
nbtkattkkyhrvh |
tctgattggttagt |
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V_USF_Q6 |
10 |
M00187 |
USF |
shcacdkkdb |
gtcacgtggc |
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V_ZID_01 |
13 |
M00085 |
ZID |
bskctcyakbdym |
cggctctatcatc |
|
V_PBX1_02 |
15 |
M00124 |
Pbx1b |
nhnatcaatcaadnh |
cacatcaatcaaatt |
|
V_PBX1_01 |
9 |
M00096 |
Pbx-1 |
whbwwwhaw |
atcaatcaa |
|
V_YY1_02 |
20 |
M00069 |
YY1 |
nnnsbrccatstdsnhtsnd |
ccgcggccatcttggctgct |
|
V_YY1_01 |
17 |
M00059 |
YY1 |
nvnnnycaknbhnnnnn |
gaacaccatttttgaac |
|
V_COUP_01 |
14 |
M00158 |
COUP-TF / HNF-4 |
kkamcyytrvmchb |
tgacctttgaacct |
|
V_NFAT_Q6 |
12 |
M00302 |
NF-AT |
hnnwkkaaahhn |
cagaggaaaaat |
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V_MYB_Q6 |
10 |
M00183 |
c-Myb |
nnnaacbdnb |
ctcaactggc |
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V_E4BP4_01 |
12 |
M00045 |
E4BP4 |
nvttayktaabn |
cgttatgtaacg |
|
V_SOX9_B1 |
14 |
M00410 |
SOX-9 |
nnndwwcaatrvnn |
taagaacaatggga |
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V_CEBP_C |
18 |
M00201 |
C/EBP |
nkwvtkhbkyaakvbmyd |
ggtatttggcaatgcaca |
|
V_P53_02 |
10 |
M00272 |
p53 |
nrrcwwkyyh |
agacatgcct |
|
V_CREL_01 |
10 |
M00053 |
c-Rel |
bkkdnwtwyc |
ggggatttcc |
|
V_ATF_01 |
14 |
M00017 |
ATF |
hbvtkackwndnbb |
ctctgacgtcaccc |
|
V_SP1_Q6 |
13 |
M00196 |
Sp1 |
nvdrkkmkkrrbb |
ggggggcggggcc |
|
V_MEIS1A/HOXA9_01 |
14 |
M00420 |
MEIS1A/HOXA9 |
tkacmkkttwwyrr |
tgacagttttacga |
|
V_MIF1_01 |
18 |
M00279 |
MIF-1 |
nnkktscwhrkymacnbb |
cagttgctaggcaacggg |
|
V_HSF1_01 |
10 |
M00146 |
HSF1 |
dkawndddcn |
agaatgttcg |
|
V_AP4_Q6 |
10 |
M00176 |
AP-4 |
vdcakcksbn |
cacagctggt |
|
V_AP1FJ_Q2 |
11 |
M00172 |
AP-1 |
vvtkacnnmnh |
ggtgactcagt |
|
V_CDPCR3_01 |
15 |
M00105 |
CDP CR3 |
cacvrrbrnntatbk |
caccaatatgtatgg |
|
V_FREAC3_01 |
16 |
M00291 |
Freac-3 |
nnnvnktaaayaadsv |
ggtaagtaaataaaca |
|
V_HFH3_01 |
13 |
M00289 |
HFH-3 |
dnntrtttrydkd |
ggatgtttgttta |
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V_OCT1_Q6 |
15 |
M00195 |
1-Oct |
vdvhatkyaaaknmb |
aaatatgcaaatcac |
|
V_IRF1_01 |
13 |
M00062 |
IRF-1 |
saaaasykaaasy |
gaaaagtgaaacc |
|
V_GATA2_01 |
10 |
M00076 |
GATA-2 |
nvnkatnnbn |
gcggatagcg |
|
V_NRSF_01 |
21 |
M00256 |
NRSF |
kbcakcaccdmkkwcakmvsm |
ttcagcaccacggacagcgcc |
|
V_CDPCR3HD_01 |
10 |
M00106 |
CDP CR3+HD |
vrtykatbbs |
gatcgatccc |
|
V_TCF11MAFG_01 |
22 |
M00284 |
TCF11/MafG |
vhnnnrtkasdhwkcandwvhb |
ctaaaatgactcagcaattatg |
|
V_HNF1_C |
17 |
M00206 |
HNF-1 |
dkbyaawbawtndmhwm |
agttaattattaaccaa |
|
V_ARNT_01 |
16 |
M00236 |
Arnt |
ndddnmacktknnnbn |
gttgtcacgtgcccgc |
|
V_AREB6_04 |
9 |
M00415 |
AREB6 |
vbktttsnn |
ctgtttcag |
|
V_AREB6_03 |
12 |
M00414 |
AREB6 |
vbrcacctkkdv |
ctgcacctgtgc |
|
V_AREB6_02 |
12 |
M00413 |
AREB6 |
nnhcacctnhnn |
attcacctgtac |
|
V_AREB6_01 |
13 |
M00412 |
AREB6 |
nhydyacctkwvy |
tacttacctgtgt |
|
V_PAX2_01 |
19 |
M00098 |
Pax-2 |
nnhndwywhkbdhnhnbnn |
cctcgtcacgcatgatgga |
|
V_USF_02 |
14 |
M00122 |
USF |
nnvncabvtknbnn |
aaatcacgtgatat |
|
V_FREAC4_01 |
16 |
M00292 |
Freac-4 |
sywrdktaaacadhvn |
cttaagtaaacaatgg |
|
V_SRF_Q6 |
14 |
M00186 |
SRF |
bnccawatwwkkvn |
ggccatataaggac |
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V_HNF4_01 |
19 |
M00134 |
HNF-4 |
nnnrkdbyaarkkbyvnnn |
acagggtcaaaggtcaaga |
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V_FOXD3_01 |
12 |
M00130 |
FOXD3 |
dwwtrttddhky |
gattgtttgttt |
|
V_GATA3_01 |
9 |
M00077 |
GATA-3 |
nnkatddnn |
gagataggg |
|
V_ISRE_01 |
15 |
M00258 |
ISRE |
baktttcwbttyyns |
cagtttcactttccc |
|
V_GRE_C |
16 |
M00205 |
GR |
bkywymndvwktyctb |
ggtacaatctgttctg |
|
V_TCF11_01 |
13 |
M00285 |
TCF11 |
ktcaynnwdnnnn |
gtcattttggaag |
|
V_GR_Q6 |
19 |
M00192 |
GR |
nnnnnnnnnwntkwnshnn |
tgggtacactgtgttctag |
|
V_CEBP_Q2 |
14 |
M00190 |
C/EBP |
nnnttrbdnhrnnn |
acattgcataatta |
|
V_CHOP_01 |
13 |
M00249 |
CHOP-C/EBPalpha |
nnrtkmaayvvbb |
agatgcaatcccc |
|
V_TAXCREB_02 |
15 |
M00115 |
Tax/CREB |
rtkackcaymyccym |
atgacgcataccccc |
|
V_SP1_01 |
10 |
M00008 |
Sp1 |
drkksdkksh |
ggggcggggt |
|
V_TAXCREB_01 |
15 |
M00114 |
Tax/CREB |
nnsskbtkackbmnn |
gggggttgacgcaga |
|
V_MYCMAX_02 |
12 |
M00123 |
c-Myc/Max |
nhncacryknnh |
taccacgtgtca |
|
V_MYCMAX_01 |
14 |
M00118 |
c-Myc/Max |
ndrscacktksyhn |
cgaccacgtggtca |
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V_CDP_02 |
15 |
M00102 |
CDP |
dhdatykathadhdh |
tatatcgattatttt |
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V_CDP_01 |
12 |
M00095 |
CDP |
ccaataaybrww |
ccaataatcgat |
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V_XBP1_01 |
17 |
M00251 |
XBP-1 |
dndnwbacktkdnnhwd |
atgatgacgtgtcctat |
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V_OCT1_07 |
12 |
M00248 |
1-Oct |
dntatkbwaatt |
tctatgctaatt |
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V_OCT1_06 |
14 |
M00162 |
1-Oct |
vdnhhtkdvatdyn |
caaaatgacatgca |
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V_AML1_01 |
6 |
M00271 |
AML-1a |
tkykkt |
tgtggt |
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V_OCT1_05 |
14 |
M00161 |
1-Oct |
vkvmttwbcatdhb |
ataatttgcatatt |
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V_OCT1_04 |
23 |
M00138 |
1-Oct |
dhdndnnhatkhwwawnnndnnd |
atataattatgcaaattaaaaga |
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V_OCT1_03 |
13 |
M00137 |
1-Oct |
nnnvyaawndnnn |
ctcgtaatgaggt |
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V_OCT1_02 |
15 |
M00136 |
1-Oct |
nnbmatatkcrnnnn |
atgaatatgcatata |
|
V_NF1_Q6 |
18 |
M00193 |
NF-1 |
nnytkkcnnnndnnnnnn |
tcttggcaagaagccaaa |
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V_ARP1_01 |
16 |
M00155 |
ARP-1 |
ysmrbyyhtkrvmybw |
tgaacccttgacccct |
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V_ER_Q6 |
19 |
M00191 |
ER |
nnvrdnndnnbtkaccydn |
acaggtcactgtgacctga |
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V_AP1_C |
9 |
M00199 |
AP-1 |
ntkavtmab |
atgagtcag |
|
V_HAND1E47_01 |
16 |
M00222 |
Hand1/E47 |
nndndndtctkshdnn |
aatggcgtctggcatt |
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V_NKX61_01 |
13 |
M00424 |
NKX6-1 |
hwyttaatkknww |
tttttaattggtt |
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V_CREBP1CJUN_01 |
8 |
M00041 |
CRE-BP1/c-Jun |
tkacktya |
tgacgtca |
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V_TGIF_01 |
11 |
M00418 |
TGIF |
wvytktcandd |
agctgtcagaa |
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V_SRY_01 |
7 |
M00148 |
SRY |
wawswhm |
aaacaaa |
|
V_NFE2_01 |
11 |
M00037 |
NF-E2 |
hrmtkaskymh |
tgctgagtcac |
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V_RREB1_01 |
14 |
M00257 |
RREB-1 |
mcccammmmmmmmm |
ccccaaaccacccc |
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V_ELK1_02 |
14 |
M00025 |
Elk-1 |
nnndmmkkawvbnn |
ccaaccggaagtcc |
|
V_ELK1_01 |
16 |
M00007 |
Elk-1 |
ndvrsmkkawkynmvh |
aaaacaggaagtacgt |
|
V_P300_01 |
14 |
M00033 |
p300 |
dnvdrdaktdnnnb |
acagggagtgagtg |
|
V_AHRARNT_02 |
19 |
M00237 |
AhR/Arnt |
rdbnrkykcktkhswdbbc |
ggggatcgcgtgacaaccc |
|
V_BRN2_01 |
16 |
M00145 |
Brn-2 |
nncatbsdwaatvmdh |
gccatccaaaatgaac |
|
V_AHRARNT_01 |
16 |
M00235 |
AhR/Arnt |
ddndndkykcktkhhv |
taagggttgcgtgccc |
|
V_MZF1_02 |
13 |
M00084 |
MZF1 |
dndnkrkkkkndv |
gggtgagggggaa |
|
V_MZF1_01 |
8 |
M00083 |
MZF1 |
ndnkkkka |
agtgggga |
|
V_S8_01 |
16 |
M00099 |
S8 |
nnnnnhyaattadbnd |
tttaaccaattaacct |
|
V_CMYB_01 |
18 |
M00004 |
c-Myb |
bvnvvnrrcvkttrnbkk |
cccaacggcggttggggg |
|
V_AHR_01 |
18 |
M00139 |
AhR |
bybsnrnstnkcktknvw |
cccccggctagcgtgaga |
|
V_CP2_01 |
11 |
M00072 |
CP2 |
sshmdmvcmak |
gcacaacccag |
|
V_BRACH_01 |
24 |
M00150 |
Brachyury |
hdhntsrcacstakktktsamwhb |
ctagtcacacctaggtgtgaaatt |
|
|
V_NMYC_01 |
12 |
M00055 |
N-Myc |
nnncacktknnn |
tcccacgtgtca |
|
V_GATA1_01 |
10 |
M00075 |
GATA-1 |
bvnkatnnnn |
cgtgataggg |
|
V_SOX5_01 |
10 |
M00042 |
Sox-5 |
nnaacaatnn |
ttaacaatac |
|
V_IK1_01 |
13 |
M00086 |
Ik-1 |
nhnykkkaahdhn |
acttgggaatacc |
|
V_LYF1_01 |
9 |
M00141 |
Lyf-1 |
kytrkkrrr |
tttgggaga |
|
V_HOXA3_01 |
9 |
M00395 |
HOXA3 |
svtdnddkb |
cctaattgg |
|
V_HOX13_01 |
30 |
M00023 |
Hox-1.3 |
yschhhbhycyymattabyvndhvmvhycn |
tgccaactcccccattagtgctcgactcca |
|
|
V_EVI1_06 |
9 |
M00011 |
Evi-1 |
acaakatar |
acaagataa |
|
V_PAX3_01 |
13 |
M00360 |
Pax-3 |
tckwcacrshyhv |
tcgtcacgcttca |
|
V_MSX1_01 |
9 |
M00394 |
Msx-1 |
hnbtwhntk |
ccgtaattg |
|
V_PPARA_01 |
20 |
M00242 |
PPARalpha/RXR-alpha |
vhrvdvyrkknmawakktsw |
caaaactaggtcaaaggtca |
|
V_NKX25_02 |
8 |
M00241 |
Nkx2-5 |
swtaatwv |
cttaattg |
|
V_NKX25_01 |
7 |
M00240 |
Nkx2-5 |
dyaaktr |
tcaagtg |
|
V_EN1_01 |
7 |
M00396 |
En-1 |
rwddtbb |
gtaattg |
|
V_PAX4_04 |
30 |
M00380 |
Pax-4 |
rnwwawwdnnnnnnhnnnnnnnhhbmyhsb |
aaaaattaacccaaaatccaacctcacccc |
|
|
V_PAX4_03 |
12 |
M00378 |
Pax-4 |
nnnnhhcashsb |
aatccccacccc |
|
V_PAX4_02 |
11 |
M00377 |
Pax-4 |
nrhwaattdvv |
gaataattacc |
|
V_PAX4_01 |
21 |
M00373 |
Pax-4 |
nbnvktsrnkskbvnnvvnbn |
ggcggtcatgcgtgcgcgacc |
|
V_GKLF_01 |
14 |
M00286 |
GKLF |
vnndvrvrrvdrkk |
aaaaaaaaaaaggg |
|
V_COMP1_01 |
24 |
M00057 |
COMP1 |
nvnnwdswwwrvsndbdvvmvvbn |
tgttttgattgacaacaaaaggcc |
|
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TRANSFAC
name |
Motif Length |
TRANSFAC Identifier |
TF name |
consensus sequence |
most likely sequence |
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