Annotating significant pairs of transcription factor binding sites in regulatory DNA - Full text - MIT Libraries
K Rateitschak, T Mueller, M Vingron - In Silico Biol, 2004 - iospress.metapress.com
... AP1,TM 1.6 NRF1,NRF1 2.4 NRF1,NRF1 2.3 ARNT,ATF 1.4 CS,ELK1 2.3 NFE2,NFE2 2.3
SRF,SRF 1.4 SP3,TAXCREB 2.2 CJ,ATF6 2.0 CJ,MAX 1.2 CREB,ARNT 2.1 MAX,ARNT 2.0 ...
Cited by 1 - Web Search - bioinfo.de - bioinfo.de - ncbi.nlm.nih.gov

In Silico Identification of Regulatory Elements of GRIN 1 Genes
MK Mejia-Guerra, LR Lareo - Omics A Journal of Integrative Biology, 2005 - dx.doi.org
... Position 800 to 700 MEF2 Bsap, SRF- ARNT- HMG-IY, AGL3, nMyc SQUA Max- Myc- Max,
ARNT- nMyc 700 to 600 Spz1 Snail 600 to 500 RREB-1 E4BP4, E4BP4 E4BP4, ...
Web Search - liebertonline.com - liebertonline.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

Computational analysis of composite regulatory elements - Full text - MIT Libraries
P Qiu, W Ding, Y Jiang, JR Greene, L Wang - Mammalian Genome, 2002 - springerlink.com
... FREAC3 FREAC7 220.8 PBX1 TATA 66.3 SP1 USF 33.0 ARNT GRE 220.0 ATF P53 63.4
MZF1 SP1 32.8 ... AP1FJ CREB 188.9 HSF2 STAT 62.8 HNF1 SRF 31.0 ...
Cited by 10 - Web Search - ncbi.nlm.nih.gov

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters - Full text - MIT Libraries
OV Kel-Margoulis, TG Ivanova, E Wingender, AE Kel - Pacific Symposium on Biocomputing, 2002 - smi.stanford.edu
... specific Tal-1 (0.50), YY-1 (1.0), Oct-1 (0.40), MyoD (0.80), SRF (1.0), PAX5 ...
Housekeeping Egr-2 (0.15), AhR/Arnt (0.72), ZID (0.94), Elk-1 (0.79), NRF-2 (0.54 ...
Cited by 23 - View as HTML - Web Search - www-smi.stanford.edu - helix-web.stanford.edu - ncbi.nlm.nih.gov

Cell fate choices in Drosophila tracheal morphogenesis - Full text - MIT Libraries
E Zelzer, BZ Shilo - Bioessays, 2000 - doi.wiley.com
... bHLH-PAS protein Tango, homolo- gous to the vertebrate ARNT protein. ... pruned/SRF/
blistered MADS-box transcription factor Determination of terminal cell fate ...
Cited by 20 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Notch Signaling Represses Myocardin-induced Smooth Muscle Cell Differentiation - Full text - MIT Libraries
A by Proweller, AA by Parmacek - J. Biol. Chem, 2005 - jbc.org
... myocardin (pcDNA3-myocardin), were generated by subcloning the mouse SRF and myocardin
cDNAs ... The ARNT expression plasmid, pcDNA3-Arnt, was kindly provided by MC ...
Web Search - jbc.org - ncbi.nlm.nih.gov

The roles of sex steroid receptor coregulators in cancer - Full text - MIT Libraries
X Gao, B Loggie, Z Nawaz - Molecular Cancer, 2002 - dx.doi.org
... identified a basic helix-loop-helix (bHLH) domain and two Per-Arnt-Sim (PAS ... and
SRC-1. Subsequent study showed that ASC-2 also interacted with SRF (the serum ...
Cited by 7 - Web Search - pubmedcentral.nih.gov - molecular-cancer.com - citebase.eprints.org - all 9 versions »

SUMO Substrates and Sites Prediction Combining Pattern Recognition and Phylogenetic Conservation
Y Xue, F Zhou, H Lu, G Chen, X Yao, X Yao - Arxiv preprint q-bio.GN/0409011, 2004 - arxiv.org
... K386, K520 11121022 Yes ARNT (aryl hydrocarbon receptor nuclear transporter) K245
12354770 Yes ... K464 12615929 No b SRF (serum response factor) K147 12788062 Yes ...
View as HTML - Web Search - arxiv.org - adsabs.harvard.edu

GATA-4 and Nkx-2.5 coactivate Nkx-2 DNA binding targets: role for regulating early cardiac gene … - Full text - MIT Libraries
JL Sepulveda, N Belaguli, V Nigam, CY Chen, M … - Mol. Cell. Biol, 1998 - mcb.asm.org
... The cardiogenic homeodomain factor Nkx-2.5 and serum response factor (SRF) provide
strong transcriptional coactivation of the cardiac -actin ( CA) promoter in ...
Cited by 130 - Web Search - mcb.asm.org - pubmedcentral.nih.gov - ncbi.nlm.nih.gov - all 5 versions »

Molecular Cancer - Full text - MIT Libraries
X Gao, BW Loggie, Z Nawaz - Molecular Cancer, 2002 - biomedcentral.com
... identified a basic helix-loop-helix (bHLH) do- main and two Per-Arnt-Sim (PAS ... sequent
study showed that ASC-2 also interacted with SRF (the serum response factor ...
View as HTML - Web Search

Regulation and Function of SUMO Modification - Full text - MIT Libraries
RS Hilgarth, LA Murphy, HS Skaggs, DC Wilkerson, H … - J Biol Chem, 2004 - jbc.org
... inhibited by SUMO modification include STAT1, catenin-TCF/LEF, c-Jun, Ah receptor
nuclear translocator (ARNT), CEBP , c-Myb, Sp3, IRF-1, SREBPs, SRF, Elk, AP1 ...
Cited by 8 - Web Search - jbc.org - ncbi.nlm.nih.gov

An initial blueprint for myogenic differentiation - Full text - MIT Libraries
A Blais, M Tsikitis, D Acosta-Alvear, R Sharan, Y … - Genes & Development, 2005 - genesdev.org
... 2). Notably, 17 transcriptional regulators (including ATF4, XBP1, ARNT, Copeb/KLF6 ...
In particular, binding sites for MEF2, Six1, SRF, nuclear receptors (for ...
Cited by 3 - Web Search - cs.tau.ac.il - dx.doi.org - ncbi.nlm.nih.gov - all 6 versions »

Statistical methods for joint data mining of gene expression and DNA sequence database
MD Curran, H Liu, F Long, N Ge - SIGKDD Explorations Special Issue on Microarray Data Mining, 2003 - portal.acm.org
... the cluster analysis has detected those collinear binding sites from different motif
families, such as MEIS and TGIF, CRE-BP1 and vJun, Arnt and Max, RSRFC4 ...
Cited by 3 - Web Search - acm.org - portal.acm.org

A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... Problem SRF C Serum responsive factor Core should be ATGG not CCWT ... RCCAA SRF
01 Serum response factor Core should be CCATATATGG not TATA ...
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Requirement of the MADS-box transcription factor MEF2C for vascular development - Full text - MIT Libraries
Q Lin, J Lu, H Yanagisawa, R Webb, GE Lyons, JA … - Development, 1998 - dev.biologists.org
... The vascular defects observed in ARNT and HIF1α mutant mice are similar to ... could
regulate the expression or activity of another factor (SRF perhaps?) that is ...
Cited by 81 - Web Search - dev.biologists.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Functional characterization of the human CYP1A1 negative regulatory element: modulation of Ah … - Full text - MIT Libraries
MP Piechocki, RN Hines - Carcinogenesis, 1998 - carcin.oupjournals.org
... and Whitlock (29) have proposed that upon binding of the AhR/ARNT heterodimer to
one ... in which the sequences from positions -656 (Bpu1102) to -587 (Srf I) were ...
Cited by 11 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Annual Review of Physiology
KR Stenmark, SH Abman - arjournals.annualreviews.org
... SRF binds the serum response elements in the promoter regions of mural cell ... and
functional homology with members of the mammalian HIF-1 /ARNT family where both ...
Web Search - arjournals.annualreviews.org

Lung Vascular Development: Implications
KR Stenmark, SH Abman - arjournals.annualreviews.org
... TGF-β can also induce differentiation via the up-regulation of the
transcription factor serum response factor (SRF) (93). SRF binds ...
Web Search

UNIVERSIDAD COMPLUTENSE DE MADRID
RPORCY AMPC - tesis.sim.ucm.es
... primario es casi siempre inestable, en procariotas es degradado rápidamente o cortado
para originar los productos finales maduros (ARNr y ARNt), en eucariotas ...
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Developmental Expression of Transcription Factors
AIP Tacc - acta.uta.fi
... domain named after the transcription factors Mcm1, Ag, DEFA and SRF MAPK mitogen ...
cell nuclear antigen PI3K phosphatidylinositol-3 kinase PAS Per-Arnt-Sim PAX ...
Web Search

The Coming of Age of Cardiovascular Science
CE SEIDMAN, JG SEIDMAN - Cold Spring Harbor Symposia on Quantitative Biology, 2002 - dx.doi.org
... Genetic ma- nipulation of ARNT and HIF genes in the mouse evi- dences the ... importance
of com- binatorial expression of Nkx2.5 and MADS proteins SRF, MEF2, and ...
Web Search - cshl-symposium.org - cshl-symposium.org - ncbi.nlm.nih.gov - all 5 versions » - Get it from MIT Libraries

Mammalian Vestigial-like 2, a Cofactor of TEF-1 and MEF 2 Transcription Factors That Promotes … - Full text - MIT Libraries
T Maeda, DL Chapman, AFR Stewart - J Biol Chem, 2002 - jbc.org
... TEF-1 and MEF2C resides in the basic-helix-loop-helix/Per-Arnt-Sim domain ... Recently,
a cardiac-specific cofactor for the serum response factor (SRF) has been ...
Cited by 11 - Web Search - dx.doi.org - jbc.org - ncbi.nlm.nih.gov

pGL3 Luciferase Reporter Vectors
I Description, IIIP Components, IVC Methods, I … - promega.com
... Clox Pbx-1 IF1 Pax1 CDP CDP Arnt NKX3.1 AC-t Neu1/3 Nkx2.5 RFX1 TCF v-Myb NF-kB
SRF E2F PAX9 RFX1 Cone-rod HLF Tal-1a PAX-6 c-Myb Gfi-1B CDF-1 Bright ...
Web Search - genomics.sbg.ac.at - sci.sdsu.edu - shpromega.cn - all 8 versions »

TranSignal TM GR-TF Interaction Arrays
PU Manual - panomics.com
Page 1. TranSignal TM GR-TF Interaction Arrays GR-TFCat. # MA5061, MA5062 &
MA5063 Product User Manual Released 07/29/04 Panomics, Inc. ...
View as HTML - Web Search - biocat.de

TranSignal TM Protein/DNA Arrays
PU Manual, MA MA1014 - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays Cat. # MA1010, MA1011, MA1012 Product User
Manual, MA1013 & MA1014, MA1015 Released 09/28/04 Panomics, Inc. ...
View as HTML - Web Search - biocat.de

The cardiac homeobox gene Csx/Nkx2. 5 lies genetically upstream of multiple genes essential for … - Full text - MIT Libraries
CT Basson, W Pease, GM Silberbach, JP Moak, M … - Development, 1999 - dev.biologists.org
... The 5′ probe (a SpeI–XbaI fragment) was used for Southern blot analysis. Sp, SpeI;
Xb, XbaI; N, NotI; Srf, SrfI. (B) Genotyping of ES cell clones. ...
Cited by 102 - Web Search - cardiogenomics.med.harvard.edu - cardiogenomics.med.harvard.edu - ncbi.nlm.nih.gov - all 6 versions »

BRANCHING MORPHOGENESIS OF THE DROSOPHILA TRACHEAL SYSTEM - Full text - MIT Libraries
A Ghabrial, S Luschnig, MM Metzstein, MA Krasnow - Annual Review of Cell and Developmental Biology, 2003 - astro.annualreviews.org
... blistered encodes the Drosophila homologue of mammalian serum response factor (SRF)
(Affolter et al. 1994a, Guillemin et al. 1996, Montagne et al. ...
Cited by 10 - Web Search - astro.annualreviews.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Signals mediating nuclear targeting and their regulation: Application in drug delivery
DA Jans, CK Chan, S Huebner - Medicinal Research Reviews, 1998 - doi.wiley.com
... Dorsal 84 RRKRQR 340 v-jun 85 KSRKRKL 253 IgG Yeast histone 2B 86 GKKRSKAK 36 G
mMx1 87 REKKKFLKRR 615 SRF 88 RRGLKR 100 IgG/ G Prothymosin 89 TKKQKT 107 G ...
Cited by 28 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

Luciferase Reporters: Less is More
A Paguio, B Almond, F Fan, P Stecha, D Garvin, M … - promega.com
... Clox Pbx-1 IF1 Pax1 CDP CDP Arnt NKX3.1 AC-t Neu1/3 Nkx2.5 RFX1 TCF v-Myb NF-kB
SRF E2F PAX9 RFX1 Cone-rod HLF Tal-1a PAX-6 c-Myb Gfi-1B CDF-1 Bright ...
Web Search

Conditional alleles in mice: Practical considerations for tissue-specific knockouts - Full text - MIT Libraries
KM Kwan - genesis, 2002 - doi.wiley.com
... Apc 18 (15.0) ΠShibata et al., 1997 Arnt (aryl hydrocarbon receptor unclear
translocator) ... Sox9 11 (69.5) F Kist et al., 2002* Srf (serum response factor) ...
Cited by 27 - Web Search - tagc.univ-mrs.fr - biochem.wisc.edu - ncbi.nlm.nih.gov - all 6 versions »

Genomic and Proteomic Profiling of Responses to Toxic Metals in Human Lung Cells - Full text - MIT Libraries
AS Andrew, AJ Warren, A Barchowsky, KA Temple, L … - Environmental Health Perspectives, 2003 - ehpnet1.niehs.nih.gov
Page 1. Eight of the top 50 substances on the 1997 Agency for Toxic Substances
and Disease Registry (ATSDR) priority list (ATSDR ...
Cited by 12 - View as HTML - Web Search - earthscape.org - dx.doi.org - csa.com - all 9 versions »

[CITATION] Responding to hypoxia: lessons from a model cell line
KA Seta, Z Spicer, Y Yuan, G Lu, DE Millhorn - Sci. STKE, 2002
Page 1. www.stke.org/cgi/content/full/sigtrans;2002/146/re11 Page 1 Mammalian
cells require a constant supply of oxy- gen to maintain ...
Cited by 12 - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

[CITATION] Fungal histidine kinases
JL Santos, K Shiozaki - Sci. STKE, 2001
... Mcm1 is struc- turally related to the mammalian serum response factor (SRF) and
is ... histidine ki- nase domain, Mak2 and Mak3 each have one Per, Arnt, Sim (PAS ...
Cited by 8 - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

TranSignal TM Protein/DNA Arrays
CS Version - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays (Column Separation Version) Cat. #
MA1210, MA1211, MA1212l, MA1213 & MA1214, MA1215 Product ...
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Gene Expression Profiling of Leiomyoma and Myometrial Smooth Muscle Cells In Response to TGF-β
X Luo, L Ding, J Xu, N Chegini - Endocrinology (submitted), 2004 - endo.endojournals.org
Page 1. 1 Gene Expression Profiling of Leiomyoma and Myometrial Smooth Muscle Cells
In Response to TGF-β Xiaoping Luo, Li Ding, Jingxia Xu, and Nasser Chegini ...
Cited by 1 - Web Search - endo.endojournals.org

ISMB 2001 Poster Abstracts
WG Analysis, A Techniques, P Structure, P Families … - ismb01.cbs.dtu.dk
div.bulk { text-align: justify } ISMB 2001 Poster Abstracts. Whole Genome
Analysis. 1. Identification of thermophilic species by the ...
Cached - Web Search