About GATA3, HNF3A and XBP1, three genes co-expressed with the oestrogen receptor-a gene (ESR1) in …
M Lacroix, G Leclercq - Molecular and Cellular Endocrinology, 2004 - geocities.com
... have revealed that a series of genes are expressed in close association with the
oestrogen receptor- (ER- ) gene, ESR1. Three of them, GATA3, HNF3A (also known ...
Cited by 3 - View as HTML - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

Mutation of GATA 3 in human breast tumors - Full text - MIT Libraries
J Usary, V Llaca, G Karaca, S Presswala, M Karaca, … - Oncogene, 2004 - nature.com
... The highest expressionof GATA3 and ESR1 is seenin tumors of the ‘Luminal A’ subtype,
which is a subtype that is associated with the most favorable survival ...
Web Search - genome.unc.edu - ncbi.nlm.nih.gov

GEArray Q Series Human Breast Cancer and Estrogen Receptor Signaling Gene Array: AR-SAHS-020
FG Grouping - eurogentec.com
... Genes associated with the estrogen receptor signaling pathway: AR, C3 (Complement
component 3), CCND1, CTSD (cathepsin D), ESR1, ESR2, GATA3, HSP28, KRT18 ...
View as HTML - Web Search - eurogentec.be

GEArray Q Series Mouse Breast Cancer and Estrogen Receptor Signaling Gene Array: AR-SAMM-020
FG Grouping - eurogentec.com
... Genes associated with the estrogen receptor signaling pathway: Ar, C3 (Complement
component 3), Ccnd1, Ctsd (cathepsin D), Esr1, Esr2, Gata3, Hsp25 (HSP-27 ...
View as HTML - Web Search - eurogentec.be

Cross-validation for linear model with unequal variances in genomic analysis.
L Li, SC Chow, W Smith - JOURNAL OF BIOPHARMACEUTICAL STATISTICS, 2004 - taylorandfrancis.metapress.com
Page 1. Cross-Validation for Linear Model with Unequal Variances in Genomic
Analysis Li Li, 1, * Shein-Chung Chow, 2 and Woollcott Smith 3 ...
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Gene expression profiles of poor-prognosis primary breast cancer correlate with survival - Full text - MIT Libraries
F Bertucci, V Nasser, S Granjeaud, F Eisinger, J … - Human Molecular Genetics, 2002 - hmg.oupjournals.org
... Subtypes of ER-positive breast tumours have recently been reported by others using
discriminator genes such as ESR1, GATA3, XBP1 or MYB, also present in our ...
Cited by 41 - Web Search - hmg.oupjournals.org - ncbi.nlm.nih.gov

Distinct and Complementary Information Provided by Use of Tissue and DNA Microarrays in the Study of … - Full text - MIT Libraries
C Ginestier, E Charafe-Jauffret, F Bertucci, F … - development - ajp.amjpathol.org
... Interestingly, six of them (BCL2, ERBB2, ESR1, GATA3, MUC1, PRLR) have also been
frequently identified as discriminator genes in expres- sion-profiling studies ...
Cited by 24 - Web Search - ingentaconnect.com - utoronto.ca - ncbi.nlm.nih.gov - all 6 versions »

GraphExplore: a software tool for network visualization
Q Wang, G Yao, J Nevins, M West, A Dobra - isds.duke.edu
... The targets are the oestrogen receptor-α gene (ESR1) together with three other genes
(GATA3, FOXA1/HNF3A, XBP1) that are known to have expression levels ...
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Conservation of Breast Cancer Molecular Subtypes and Transcriptional Patterns of Tumor Progression … - Full text - MIT Libraries
K Yu, CH Lee, PH Tan, P Tan - Clinical Cancer Research, 2004 - clincancerres.aacrjournals.org
... As shown in Fig. 2 , even after removing several "well-known" marker genes,
such as ESR1, GATA3, and TFF3, from the analysis (see Fig. ...
Cited by 1 - Web Search - clincancerres.aacrjournals.org - ncbi.nlm.nih.gov

Blind Source Separation and the Analysis of Microarray Data - Full text - MIT Libraries
P Chiappetta, MC Roubaud, B Torresani - Journal of Computational Biology, 2004 - dx.doi.org
Page 1. JOURNAL OF COMPUTATIONAL BIOLOGY Volume 11, Number 6, 2004 © Mary Ann Liebert,
Inc. Pp. 1090–1109 Blind Source Separation and the Analysis of ...
Cited by 1 - Web Search - liebertonline.com - cmi.univ-mrs.fr - ncbi.nlm.nih.gov - all 5 versions »

Separation de Sources pour l’Analyse de Donnees d’Expression
P Chiappetta, MC Roubaud, B Torresani - irisa.fr
... Le premier groupe (ESR1, GATA3, XBP1...) corrobore les résultats précédemment obtenus
sur le même jeu de données [5], ainsi que d’autres résultats ...
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[PS] Classification mixte pour l’analyse de donnees d’expression
P Chiappetta, MC Roubaud, B Torresani - Proc. JOBIM’02, 2002 - cmi.univ-mrs.fr
... Le gène ESR1 est regroupé avec les gènes ANG, C4A, EGF, GLI3, MUC1, KRT19, BCL2,
GATA3, ILF1, MYB, SMARCA2, THBS1, VIL2, XBP1, IGFBP2, AMFR, PLAT,FOS. ...
Cited by 1 - View as HTML - Web Search

Prediction of clinical outcome with microarray data: a partial least squares discriminant analysis ( … - Full text - MIT Libraries
M Perez-Enciso, M Tenenhaus - Hum. Genet, 2003 - springerlink.com
Page 1. Abstract Partial least squares discriminant analysis (PLS-DA) is
a partial least squares regression of a set Y of binary ...
Cited by 7 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

BMC Bioinformatics - Full text - MIT Libraries
K Munagala, R Tibshirani, PO Brown - BMC Bioinformatics, 2004 - biomedcentral.com
... clustering procedure finds biologically meaningful sub-types for Breast and Ovarian
cancer, where we iden- tify genes like ERBB2, ESR1, NAT1, GATA3 and MSLN as ...
View as HTML - Web Search - cmgm.stanford.edu - bmc.ub.uni-potsdam.de

MINI REVIEW BREAST CANCER REVISITED USING DNA ARRAY-BASED GENE EXPRESSION PROFILING - Full text - MIT Libraries
F Bertucci, P Viens, P Hingamp, V Nasser, R … - Int. J. Cancer, 2003 - doi.wiley.com
... ERBB2 erb-b2 Tyrosine kinase receptor nd Poor Poor na ESR1 Estrogen receptor
1 nd Good Good na ... GATA3 GATA binding protein 3 nd Good Good nt ...
Cited by 22 - Web Search - ncbi.nlm.nih.gov

Cancer characterization and feature set extraction by discriminative margin clustering - Full text - MIT Libraries
K Munagala, R Tibshirani, P Brown - BMC Bioinformatics, 2004 - biomedcentral.com
... Our clustering procedure finds biologically meaningful sub-types for Breast and
Ovarian cancer, where we identify genes like ERBB2, ESR1, NAT1, GATA3 and MSLN ...
Cited by 4 - Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

Associations between gene expressions in breast cancer and patient survival - Full text - MIT Libraries
TK Jenssen, WP Kuo, T Stokke, E Hovig - Hum Genet, 2002 - springerlink.com
... in the list, GATA3 occurred twice as a consequence of appearing several times on
the array with different clones. As might have been expected, ESR1, KRT5, and ...
Cited by 13 - Web Search - pubgeneserver.uio.no - pubgene.com - idi.ntnu.no - all 6 versions »

Outcome signature genes in breast cancer: is there a unique set? - Full text - MIT Libraries
L Ein-Dor, I Kela, G Getz, D Givol, E Domany - Bioinformatics, 2004 - bioinformatics.oupjournals.org
... We chose to use ESR1 and BUB1 as representative genes of two large clusters ... Expression
of GATA3 (255) is highly correlated with ER status (Bertucci et al., 2000 ...
Cited by 6 - Web Search - arxiv.org - weizmann.ac.il - adsabs.harvard.edu - all 9 versions »

Classifying the estrogen receptor status of breast cancers by expression profiles reveals a poor … - Full text - MIT Libraries
Y Kun, LC How, TP Hoon, VB Bajic, TS Lam, A … - Human Molecular Genetics, 2003 - hmg.oupjournals.org
... Table 2). Intriguingly, although the expression levels of certain genes (eg GATA3,
BCL2) were ... For example, ESR1 and IGFR1 were only perturbed in the ER+ samples ...
Cited by 4 - Web Search - sdmc.i2r.a-star.edu.sg - ingentaconnect.com - ncbi.nlm.nih.gov - all 8 versions »

Gene expression profiling identifies molecular subtypes of inflammatory breast cancer - Full text - MIT Libraries
F BERTUCCI, P FINETTI, J ROUGEMONT, E Charafe- … - Cancer Res, 2005 - cancerres.aacrjournals.org
... expression signatures corresponding to defined biological processes or cell types:
the "estrogen receptor (ER) cluster," including ESR1, GATA3, XBP1, HNF3A ...
Cited by 1 - Web Search - cancerres.aacrjournals.org - ncbi.nlm.nih.gov

Graphical model-based gene clustering and metagene expression analysis
A Dobra, Q Wang, M West - 2004 - isds.duke.edu
Page 1. A. Dobra et al. Graphical model-based gene clustering and metagene
expression analysis Adrian Dobra, Quanli Wang and Mike West ...
Cited by 1 - View as HTML - Web Search - stat.duke.edu - stat.duke.edu - isds.duke.edu - all 5 versions »

Gene expression signature of estrogen receptor α status in breast cancer - Full text - MIT Libraries
M Abba, Y Hu, H Sun, J Drake, S Gaddis, K Baggerly … - BMC Genomics, 2005 - biomedcentral.com
... identified by all three methods displaying over-expression in ERα (+) breast carcinomas:
estrogen receptor 1 (ESR1), GATA-binding protein 3 (GATA3), mucin 1 ...
Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

BMC Genomics - Full text - MIT Libraries
MC Abba, Y Hu, H Sun, JA Drake, S Gaddis, K … - BMC Genomics, 2005 - biomedcentral.com
... identified by all three methods displaying over-expression in ERα (+) breast carcinomas:
estrogen receptor 1 (ESR1), GATA-bind- ing protein 3 (GATA3), mucin 1 ...
View as HTML - Web Search - sciencepark.mdanderson.org

Stable ‘portrait’of breast tumors during progression: data from biology, pathology and genetics
M Lacroix, RA Toillon, G Leclercq - Endocrine-Related Cancer, 2004 - erc.endocrinology-journals.org
... including ESR1 (the ER-alpha itself) and genes either regulated by estrogens
(LIV-1, TFF1, TFF3), or previously identified as co-expressed with ER (GATA3, for ...
Cited by 1 - Web Search - geocities.com - journals.endocrinology.org - ncbi.nlm.nih.gov - all 6 versions » - Get it from MIT Libraries

Basal and luminal breast cancers: basic or luminous?(review). - Full text - MIT Libraries
D BIRNBAUM, F BERTUCCI, C GINESTIER, R TAGETT, J … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
... genes of the signature are listed on the right (ESR1, estrogen receptor ... transcription
factors (eg GATA3, XBP1, ETS-like factors…) were found consistently ...
Cited by 2 - View as HTML - Web Search - ncbi.nlm.nih.gov

Gene expression profiling for molecular characterization of inflammatory breast cancer and … - Full text - MIT Libraries
F Bertucci, P Finetti, J Rougemont, E Charafe- … - Cancer Res, 2004 - cancerres.aacrjournals.org
... A cluster with a prominent role in the classification of samples included ESR1,
which codes for ER- , several transcription factor genes (GATA3, XBP1, ILF1 ...
Cited by 4 - Web Search - cancerres.aacrjournals.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Cancer Genomics and Development of Diagnostic Tools and Therapies
A Report - ctrf-cagenomics.vcu.edu
Page 1. Commonwealth Technology Research Fund Sponsored Project Title: Cancer
Genomics and Development of Diagnostic Tools and Therapies ...
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Sparse graphical models for exploring gene expression data
A Dobra, C Hans, B Jones, JR Nevins, M West - J. Multiv. Anal, 2004 - samsi.info
Page 1. Technical Report #2003-7 October 23, 2003 Statistical and Applied Mathematical
Sciences Institute PO Box 14006 Research Triangle Park, NC 27709-4006 ...
Cited by 18 - View as HTML - Web Search - stat.duke.edu - stat-ftp.berkeley.edu - portal.acm.org - all 9 versions »

Using a Customized DNA Microarray for Expression Profiling of the Estrogen-Responsive Genes to … - Full text - MIT Libraries
S Terasaka, Y Aita, A Inoue, S Hayashi, M … - Environmental Health Perspectives, 2004 - earthscape.org
... the expression markers AHR, CCND1, CYP19A1, CYP1A1, ERBB2, ESR1, ESR2, HSD17B2 ... Histone
deacetylase (HDAC6) –2.6 GATA-binding protein 3 (GATA3) –2.8 General ...
Cited by 3 - View as HTML - Web Search - ehis.niehs.nih.gov - dx.doi.org - csa.com - all 7 versions »

Molecular Identification of ERa-Positive Breast Cancer Cells by the Expression Profile of an … - Full text - MIT Libraries
A WEISZ, W BASILE, C SCAFOGLIO, L ALTUCCI, F … - JOURNAL OF CELLULAR PHYSIOLOGY, 2004 - doi.wiley.com
... 17 (KRT17), integrin b4 (ITGB4), laminin g1 (LAMC1), GATA binding protein 3 (GATA3),
estrogen regulated LIV-1 protein (LIV-1) and/or ERa (ESR1) genes, which ...
Cited by 1 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Origin and evolution of avian microchromosomes - Full text - MIT Libraries
DW Burt, FTC Alert - Cytogenetic and Genome Research, 2002 - content.karger.com
... GNRH1 1 8 14 Schmid et al. 2000 GATA3 1 10 2 Schmid et al. 2000 WNT11 1 11 7 10,
5 Schmid et al. ... CCNC 3 6 10 Schmid et al. 2000 ESR1 3 6 10 Schmid et al. 2000 ...
Cited by 21 - Web Search - dx.doi.org - karger.com - ncbi.nlm.nih.gov - all 5 versions »

Technical Advance
CM Chen, HL Chen, HCH Timothy, HAH Andrew, H Shi, … - American Journal of Pathology, 2003 - ajp.amjpathol.org
... WT1* AL049692 13 28 13 28 13 26 13 22 ESR1 NM 000125 1 1 0 0 2 3 0 0 ... CDH1
NM 004360 0 0 0 2 2 6 0 2 GATA3 NM 002051 4 4 4 4 13 10 1 0 ...
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A low-density DNA microarray for analysis of markers in breast cancer
M Lacroix, N Zammatteo, J Remacle, G Leclercq - Int J Biol Markers, 2002 - geocities.com
... 2q33.3-2q34 10918187 ESR1 Estrogen receptor 1; Hormone sensitivity 6q25.1 9816251 ...
Adhesion 2q34 9306263 GATA3 GATA-binding protein 3 10p15 10037815 ...
Cited by 6 - View as HTML - Web Search - geocities.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov - Get it from MIT Libraries

Conventional and array-based comparative genomic hybridization analyses of novel cell lines … - Full text - MIT Libraries
Y HIRAI, Y KAWAMATA, N TAKESHIMA, R FURUTA, T … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
... 6 D6S434 6q16.3 0.61 -- 0.005 6 ESR1 6q25.1 0.67 -- 0.01 0.76 -- ... 10 D10S249,
D10S533 10p15 0.52 -- 0.001 10 GATA3 10p15 0.57 -- 0.001 ...
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Bayesian Covariance Selection
A Dobra, M West - 2004 - isds.duke.edu
Page 1. Bayesian Covariance Selection ∗ Adrian Dobra Duke University, Durham,
NC 27708, adobra@isds.duke.edu Mike West Duke University ...
Cited by 1 - View as HTML - Web Search - uam.es - isds.duke.edu - stat.duke.edu - all 5 versions »

Relevance of Breast Cancer Cell Lines as Models for Breast Tumours: An Update - Full text - MIT Libraries
M Lacroix, G Leclercq - Breast Cancer Research and Treatment, 2004 - springerlink.com
... The importance of oestrogen receptor-alpha (gene ESR1) and Her-2/neu (ERBB2) as
classifiers for cell lines and tumours is under- lined. ... g ESR1 mRNA present. ...
Cited by 16 - Web Search - kluweronline.com - geocities.com - ncbi.nlm.nih.gov - all 5 versions »

Genome-wide gene-expression profiles of breast-cancer cells purified with laser microbeam … - Full text - MIT Libraries
T NISHIDATE, T KATAGIRI, ML LIN, Y MANO, Y MIKI, F … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
Page 1. Abstract. Breast carcinoma is a complex disease charac- terized
by accumulation of multiple genetic alterations, and the ...
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Expression profiling of the estrogen responsive genes for evaluation of estrogen activity among …
JT Akaba, H Sone, J Yonemoto, M Tanji, R Kiyama - ehp.niehs.nih.gov
... with the expression markers: AHR, CCND1, CYP19A1, CYP1A1, ERBB2, ESR1, ESR2,
HSD17B2, NCOA1, NCOA3, PGR, STS, TFF1, and the calibration ...
View as HTML - Web Search - ehp.niehs.nih.gov

Array-based comparative genomic hybridization for the detection of DNA sequence copy number changes … - Full text - MIT Libraries
B Albrecht, M Hausmann, H Zitzelsberger, H Stein, … - The Journal of Pathology, 2004 - doi.wiley.com
... 50TEL70 9PTEL48 PIM1 CCND3 D6S414 HTR1B D6S434 D6S268 MYB D6S311 ESR1 60TEL54 G31341 ...
TSC1 ABL1 H18962 D9S325 100TEL006 SHGC-44253 D10S249,D10S533 GATA3 WI-2389 ...
Cited by 2 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov

Chromosome-Wide Mapping of Estrogen Receptor Binding Reveals Long-Range Regulation Requiring the … - Full text - MIT Libraries
AS Brodsky, W Li, J Eeckhoute, W Shao, EA Fox, PA … - Cell, 2005 - research.dfci.harvard.edu
Page 1. Cell, Vol. 122, 33–43, July 12, 2005, Copyright ©2005 by Elsevier Inc. DOI
10.1016/j.cell.2005.05.008 Chromosome-Wide Mapping of Estrogen Receptor ...
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Alterations of chromosomal copy number during progression of diffuse-type gastric carcinomas: … - Full text - MIT Libraries
DF Peng, H Sugihara, K Mukaisho, Y Tsubosa, T … - The Journal of Pathology, 2003 - doi.wiley.com
Page 1. Journal of Pathology J Pathol 2003; 201: 439–450. Published online 18
August 2003 in Wiley InterScience (www.interscience.wiley.com). ...
Cited by 8 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov