MINI REVIEW BREAST CANCER REVISITED USING DNA ARRAY-BASED GENE EXPRESSION PROFILING - Full text - MIT Libraries
F Bertucci, P Viens, P Hingamp, V Nasser, R … - Int. J. Cancer, 2003 - doi.wiley.com
... 17,41–44 Re- markably, among the reported ER signature genes, several are common
to most studies including the transcription factors GATA3 and XBP1. ...
Cited by 22 - Web Search - ncbi.nlm.nih.gov

About GATA3, HNF3A and XBP1, three genes co-expressed with the oestrogen receptor-a gene (ESR1) in …
M Lacroix, G Leclercq - Molecular and Cellular Endocrinology, 2004 - geocities.com
... Review 3 About GATA3, HNF3A, and XBP1, three genes co-expressed with the oestrogen
receptor- gene (ESR1) in breast cancer 4 5 ... 38 GATA3, HNF3A, and XBP1 39 2.1. ...
Cited by 3 - View as HTML - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

Gene expression profiles of poor-prognosis primary breast cancer correlate with survival - Full text - MIT Libraries
F Bertucci, V Nasser, S Granjeaud, F Eisinger, J … - Human Molecular Genetics, 2002 - hmg.oupjournals.org
... Subtypes of ER-positive breast tumours have recently been reported by others using
discriminator genes such as ESR1, GATA3, XBP1 or MYB, also present in our ...
Cited by 41 - Web Search - hmg.oupjournals.org - ncbi.nlm.nih.gov

Separation de Sources pour l’Analyse de Donnees d’Expression
P Chiappetta, MC Roubaud, B Torresani - irisa.fr
... Celui-ci est co-régulé positivementavec les gènes GATA3, XBP1, THBS1, MYB, CRABP2,
KRT19, ILF1 et PLAT et co-régulé négativement avec notamment GSPT1 et ...
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Expression profiling and breast cancer biology.
L Miller, ET Liu - Breast Disease, 2004 - iospress.metapress.com
... and C. The luminal type A group was distin- guished by the highest expression of
ER alpha and as- sociated genes such as GATA3, XBP1, TFF3 and LIV- 1. Luminal ...
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Blind Source Separation and the Analysis of Microarray Data - Full text - MIT Libraries
P Chiappetta, MC Roubaud, B Torresani - Journal of Computational Biology, 2004 - dx.doi.org
Page 1. JOURNAL OF COMPUTATIONAL BIOLOGY Volume 11, Number 6, 2004 © Mary Ann Liebert,
Inc. Pp. 1090–1109 Blind Source Separation and the Analysis of ...
Cited by 1 - Web Search - liebertonline.com - cmi.univ-mrs.fr - ncbi.nlm.nih.gov - all 5 versions »

Basal and luminal breast cancers: basic or luminous?(review). - Full text - MIT Libraries
D BIRNBAUM, F BERTUCCI, C GINESTIER, R TAGETT, J … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
... Page 7. transcription factors (eg GATA3, XBP1, ETS-like factors…) were
found consistently coregulated with ER · in CK18 + luminal ...
Cited by 2 - View as HTML - Web Search - ncbi.nlm.nih.gov

GraphExplore: a software tool for network visualization
Q Wang, G Yao, J Nevins, M West, A Dobra - isds.duke.edu
... Lacroix, M. and Leclercq, G. (2004) About GATA3, HNF3A, and XBP1, three genes
co-expressed with the oestrogen receptor-α gene (ESR1) in breast cancer. ...
View as HTML - Web Search - stat.duke.edu

Gene expression profiling identifies molecular subtypes of inflammatory breast cancer - Full text - MIT Libraries
F BERTUCCI, P FINETTI, J ROUGEMONT, E Charafe- … - Cancer Res, 2005 - cancerres.aacrjournals.org
... signatures corresponding to defined biological processes or cell types: the "estrogen
receptor (ER) cluster," including ESR1, GATA3, XBP1, HNF3A, MUC1, and ...
Cited by 1 - Web Search - cancerres.aacrjournals.org - ncbi.nlm.nih.gov

Gene expression profiling for molecular characterization of inflammatory breast cancer and … - Full text - MIT Libraries
F Bertucci, P Finetti, J Rougemont, E Charafe- … - Cancer Res, 2004 - cancerres.aacrjournals.org
... codes for ER- , several transcription factor genes (GATA3, XBP1, ILF1, GLI3, PBX1),
and genes associated with ER-positive status (KRT19, CCND1, EMS1, MUC1). ...
Cited by 4 - Web Search - cancerres.aacrjournals.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Computational analysis of composite regulatory elements - Full text - MIT Libraries
P Qiu, W Ding, Y Jiang, JR Greene, L Wang - Mammalian Genome, 2002 - springerlink.com
... MZF1 SP1 1089.2 CREBP1 XBP1 146.8 GATA3 NFY 51.9 AML1 E47 27.3 BRN2
Oct-1 919.4 CREL NFAT 144.7 GR TAL1BETAITF2 51.8 STAT TST1 27.3 ...
Cited by 10 - Web Search - ncbi.nlm.nih.gov

Conservation of Breast Cancer Molecular Subtypes and Transcriptional Patterns of Tumor Progression … - Full text - MIT Libraries
K Yu, CH Lee, PH Tan, P Tan - Clinical Cancer Research, 2004 - clincancerres.aacrjournals.org
... the Asian-Chinese population within the Caucasian data set, after removal of several
well-known ER marker genes (ie, ESR1, GATA3, TFF1, TFF3, XBP1, MYB, IGFR1 ...
Cited by 1 - Web Search - clincancerres.aacrjournals.org - ncbi.nlm.nih.gov

Bayesian Covariance Selection
A Dobra, M West - 2004 - isds.duke.edu
Page 1. Bayesian Covariance Selection ∗ Adrian Dobra Duke University, Durham,
NC 27708, adobra@isds.duke.edu Mike West Duke University ...
Cited by 1 - View as HTML - Web Search - uam.es - isds.duke.edu - stat.duke.edu - all 5 versions »

Gene expression profile of murine long-term reconstituting vs. short-term reconstituting … - Full text - MIT Libraries
JF Zhong, Y Zhao, S Sutton, A Su, Y Zhan, L Zhu, C … - Proceedings of the National Academy of Sciences, 2005 - pnas.org
... with LTR HSC activity. These include Cited2, GATA3, Hdac3, Irf6, Jun B,
Nmyc1, Rnps1, Xbp1, and Zfp292. Little is known regarding ...
Cited by 1 - Web Search - pubmedcentral.nih.gov - dx.doi.org - ncbi.nlm.nih.gov - all 5 versions »

Graphical model-based gene clustering and metagene expression analysis
A Dobra, Q Wang, M West - 2004 - isds.duke.edu
Page 1. A. Dobra et al. Graphical model-based gene clustering and metagene
expression analysis Adrian Dobra, Quanli Wang and Mike West ...
Cited by 1 - View as HTML - Web Search - stat.duke.edu - stat.duke.edu - isds.duke.edu - all 5 versions »

Classifying the estrogen receptor status of breast cancers by expression profiles reveals a poor … - Full text - MIT Libraries
Y Kun, LC How, TP Hoon, VB Bajic, TS Lam, A … - Human Molecular Genetics, 2003 - hmg.oupjournals.org
... Genes with ‘perturbed’ expression included ER, GATA3, BCL2, IGF1R and RARA, while
other ER-discriminator genes, such as TFF1, TFF3 and XBP1, were unaffected ...
Cited by 4 - Web Search - sdmc.i2r.a-star.edu.sg - ingentaconnect.com - ncbi.nlm.nih.gov - all 8 versions »

Regulatory Sequence Analysis of Coclustering Genes
A TFBS - ahavj.ahajournals.org
... GATA3, 10/52=19, 8/29=28, 2/11=18, 1/6=17, 3/16=19, 1/3=33, 0/4=0, 3/9=67, 0/1=0,
0/1=0. ... XBP1, 5/52=10, 0/29=0, 0/11=0, 0/6=0, 2/16=13, 2/3=67, 0/4=0, 1/9=11, 0/ ...
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[PS] Classification mixte pour l’analyse de donnees d’expression
P Chiappetta, MC Roubaud, B Torresani - Proc. JOBIM’02, 2002 - cmi.univ-mrs.fr
... Le gène ESR1 est regroupé avec les gènes ANG, C4A, EGF, GLI3, MUC1, KRT19, BCL2,
GATA3, ILF1, MYB, SMARCA2, THBS1, VIL2, XBP1, IGFBP2, AMFR, PLAT,FOS. ...
Cited by 1 - View as HTML - Web Search

Stable ‘portrait’of breast tumors during progression: data from biology, pathology and genetics
M Lacroix, RA Toillon, G Leclercq - Endocrine-Related Cancer, 2004 - erc.endocrinology-journals.org
... 1, TFF1, TFF3), or previously identified as co-expressed with ER (GATA3, for instance ...
HNF3A, HPN, IGFBP2, IGFBP5, MYB, NAT1, SELENBP1, VAV3 and XBP1 (Perou et al ...
Cited by 1 - Web Search - geocities.com - journals.endocrinology.org - ncbi.nlm.nih.gov - all 6 versions » - Get it from MIT Libraries

Sparse graphical models for exploring gene expression data
A Dobra, C Hans, B Jones, JR Nevins, M West - J. Multiv. Anal, 2004 - samsi.info
Page 1. Technical Report #2003-7 October 23, 2003 Statistical and Applied Mathematical
Sciences Institute PO Box 14006 Research Triangle Park, NC 27709-4006 ...
Cited by 18 - View as HTML - Web Search - stat.duke.edu - stat-ftp.berkeley.edu - portal.acm.org - all 9 versions »

Molecular Identification of ERa-Positive Breast Cancer Cells by the Expression Profile of an … - Full text - MIT Libraries
A WEISZ, W BASILE, C SCAFOGLIO, L ALTUCCI, F … - JOURNAL OF CELLULAR PHYSIOLOGY, 2004 - doi.wiley.com
... 1: ASAH, CEACAM5, ERBB2, LIV-1, MGP, SCNN1A, TFF3, XBP1) and eight ... a survey of the
literature led us toidentify4additionalgenes(Table1:CYP2B6,GATA3, HNF3A, and ...
Cited by 1 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

BMC Genomics - Full text - MIT Libraries
MC Abba, Y Hu, H Sun, JA Drake, S Gaddis, K … - BMC Genomics, 2005 - biomedcentral.com
... GATA-bind- ing protein 3 (GATA3), mucin 1 (MUC1), v-myb-myeloblast- osis viral oncogene
homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17- β ...
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The Lacrimal Gland Transcriptome Is an Unusually Rich Source of Rare and Poorly Characterized Gene … - Full text - MIT Libraries
AM Ozyildirim, GJ Wistow, J Gao, J Wang, DP … - Investigative Ophthalmology & Visual Science, 2005 - iovs.org
... 19) RFC4, (20) SFRS5, (21) NR4A2, (22) RPL3, (23) CCNL2, (24) XBP1, (25) DSIPI,
(26 ... Putative GATA2, GATA3, SPI-1, SPI-B, and ZNF42 sites are represented most ...
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Genome-wide gene-expression profiles of breast-cancer cells purified with laser microbeam … - Full text - MIT Libraries
T NISHIDATE, T KATAGIRI, ML LIN, Y MANO, Y MIKI, F … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
Page 1. Abstract. Breast carcinoma is a complex disease charac- terized
by accumulation of multiple genetic alterations, and the ...
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Cancer Genomics and Development of Diagnostic Tools and Therapies
A Report - ctrf-cagenomics.vcu.edu
Page 1. Commonwealth Technology Research Fund Sponsored Project Title: Cancer
Genomics and Development of Diagnostic Tools and Therapies ...
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A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... TCF11MAFG 01 TCF11/MafG heterodimers TH1E47 01 Thing1/E47 heterodimer TST1 01
POU-factor Tst-1/Oct-6 USF 02 Upstream stimulating factor VMAF 01 v-Maf XBP1 01 ...
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Gene expression signature of estrogen receptor α status in breast cancer - Full text - MIT Libraries
M Abba, Y Hu, H Sun, J Drake, S Gaddis, K Baggerly … - BMC Genomics, 2005 - biomedcentral.com
... ESR1), GATA-binding protein 3 (GATA3), mucin 1 (MUC1), v-myb-myeloblastosis viral
oncogene homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17 ...
Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

Relevance of Breast Cancer Cell Lines as Models for Breast Tumours: An Update - Full text - MIT Libraries
M Lacroix, G Leclercq - Breast Cancer Research and Treatment, 2004 - springerlink.com
Page 1. Breast Cancer Research and Treatment 83: 249–289, 2004. © 2004 Kluwer
Academic Publishers. Printed in the Netherlands. Review ...
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Microarray analysis of gene expression in human donor sclera - Full text - MIT Libraries
TL Young, GS Scavello, PC Paluru, JD Choi, EF … - Mol Vis, 2004 - molvis.org
... protein 3 NM_003910 maternal G10 transcript G10 7q22.1 NM_003644 growth arrest-specific
7 GAS7 17p NM_002051 GATA binding protein 3 GATA3 10p15 NM_004492 ...
Cited by 3 - View as HTML - Web Search - molvis.org - scavello.net - ncbi.nlm.nih.gov

JBC Papers in Press. Published on October 24, 2001 as Manuscript M107795200
C Kumar-Sinha, S Varambally, A Sreekumar, AM … - jbc.org
Page 1. Molecular Cross-Talk Between the TRAIL and Interferon Signaling Pathways
Chandan Kumar-Sinha, Sooryanarayana Varambally, Arun ...
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Chromosome-Wide Mapping of Estrogen Receptor Binding Reveals Long-Range Regulation Requiring the … - Full text - MIT Libraries
AS Brodsky, W Li, J Eeckhoute, W Shao, EA Fox, PA … - Cell, 2005 - research.dfci.harvard.edu
Page 1. Cell, Vol. 122, 33–43, July 12, 2005, Copyright ©2005 by Elsevier Inc. DOI
10.1016/j.cell.2005.05.008 Chromosome-Wide Mapping of Estrogen Receptor ...
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