Bioconductor’s multtest package
S Dudoit, Y Ge - mssm.edu
... index) > rawp <- resT$rawp[ord] > maxT <- resT$adjp[ord] > teststat <-
resT$teststat[ord ... homolog (HU-K5) mRNA" [23] "GB DEF = Homeodomain protein HoxA9 ...
View as HTML - Web Search - maths.lth.se - pbil.univ-lyon1.fr - inn.weizmann.ac.il - all 8 versions »

Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost …
E Malaga-Trillo, A Meyer - Amer. Zool, 2001 - bioone.org
... forsteri, could not be accurately resolved because of the insufficient sequence
data available for this taxon (hoxa9 gene not reported yet). The rest of the ...
Cited by 36 - Web Search - evolutionsbiologie.uni-konstanz.de - bioone.org - apt.allenpress.com

No milk today (my Hox have gone away) - Full text - MIT Libraries
D Duboule - Commentary, 1999 - pnas.org
... However, the fact that group nine paralogous genes (ie, Hoxa9, Hoxb9, Hoxc9, and
Hoxd9 ... mesenchyme at the time that it was switched off in the rest of flank ...
Cited by 3 - Web Search - pubmedcentral.nih.gov - mammary.nih.gov - dx.doi.org - all 6 versions »

Expression of HOX genes in acute leukemia cell lines with and without MLL translocations
H Quentmeier, WG Dirks, RAF MacLeod, J Reinhardt, … - Leuk Lymphoma, 2004 - dx.doi.org
... acute leukemias [6]. In primary cases, expression of MEIS1, HOXA5, HOXA7 or HOXA9,
single or ... the wild-type status of the MLL BCR, while the rest exhibited the ...
Cited by 3 - Web Search - taylorandfrancis.metapress.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

The Role of HOX Genes in Human Implantation - Full text - MIT Libraries
H KWON, HS TAYLOR - Ann. NY Acad. Sci, 2004 - annalsnyas.org
... a developmental identity more similar to that structure in which HOXA9 is normally ...
genes increases drastically and remains elevated throughout the rest of the ...
Web Search - dx.doi.org - annalsnyas.org

HOXA10, Pbx2, and Meis1 protein expression in the human endometrium: formation of multimeric … - Full text - MIT Libraries
JL Sarno, HJ Kliman, HS Taylor, HS Taylor, A … - J Clin Endocrinol Metab, 2005 - jcem.endojournals.org
... The interaction of HOXA9, HOXB8, and HOXA10 with Pbx1 and Meis1 is essential for ...
begins to decrease at d 17 and is nearly absent through the rest of the ...
Cited by 2 - Web Search - jcem.endojournals.org - ncbi.nlm.nih.gov

Characterization of two genes encoding leucine-rich repeat-containing proteins in grass carp … - Full text - MIT Libraries
MX Chang, P Nie, HX Xie, BJ Sun, Q Gao - Immunogenetics, 2005 - springerlink.com
... the presence of putative binding sites for MYC-MAX, MEIS1, ISRE, IK3, HOXA9 and
C/EBP ... peptide and nine amino-acid residues, and the second for the rest of the ...
Cited by 1 - Web Search - ncbi.nlm.nih.gov

Self-renewal writ in blood - Full text - MIT Libraries
JE Dick - Nature, 2003 - nature.com
... Arf , could occa- sionally become altered in some clones of cultured Hoxa9–Meis1a-
induced ... sequenced by a network of European labs, with the rest ofit being ...
Cited by 4 - Web Search - nature.com

Class prediction and discovery using gene expression data
DK Slonim, P Tamayo, JP Mesirov, TR Golub, ES … - RECOMB 2000: 4 th Annual International Conference on …, 2000 - portal.acm.org
... Despite this, we attempted prediction and found that the only good predictor (making
two errors in 15 samples) contained only this single gene, HOXA9. ...
Cited by 77 - Web Search - nslij-genetics.org - broad.mit.edu - primate.or.kr - all 10 versions »

Clinical and cytogenetic features of 508 Chinese patients with myelodysplastic syndrome and …
B Chen, WL Zhao, J Jin, YQ Xue, X Cheng, XT Chen, … - Leukemia, 2005 - nature.com
... advantages and potentially transform to leukemia clones, while the rest were ablated ...
p15;p15) translocation resulting in the fusion gene of NUP98-HOXA9 is a ...
Web Search - nature.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

Fast and accurate probe selection algorithm for large genomes
WK Sung, WH Lee - IEEE Computer Society Bioinformatics Conference (CSB) In … - ieeexplore.ieee.org
... whole genome. The rest of the paper details Steps 1 to 3 in Sections 3 to 5
respectively. 3 Homogeneity Filtering Homogeneity criterion ...
Cited by 4 - Web Search - doi.ieeecomputersociety.org - conferences.computer.org - portal.acm.org - all 5 versions »

Implantation in the Human: The Role of HOX Genes - Full text - MIT Libraries
GS Daftary, HS Taylor - Seminars in Reproductive Medicine, 2000 - thieme-connect.com
... structure; this shape may be the result of ectopic uterine Hoxa9 expression, which ...
an oviduct-like structure by anterior transformation.[67] The rest of the ...
Cited by 6 - Web Search - ncbi.nlm.nih.gov

The role of HOX genes in human implantation - Full text - MIT Libraries
HS Taylor - Human Reproduction Update, 2000 - humupd.oupjournals.org
... HOXA9 is expressed in areas destined to become the Fallopian tube ... of both of these
HOX genes rises dramatically and remains elevated throughout the rest of the ...
Cited by 18 - Web Search - oup.co.uk - ingentaconnect.com - ncbi.nlm.nih.gov - all 7 versions »

An induced Ets repressor complex regulates growth arrest during terminal macrophage differentiation - Full text - MIT Libraries
GW Klappacher, VV Lunyak, DB Sykes, D Sawka- … - Cell, 2002 - rosenfeldlab.ucsd.edu
... Synthesis (A) Northern blot analysis of mRNA derived from Hoxa9-immortalized bone ...
To investigate whether METS can induce cell cycle ar- rest independently of ...
Cited by 17 - View as HTML - Web Search - rosenfeldlab.ucsd.edu - ncbi.nlm.nih.gov

The Comprehensive Mouse Radiation Hybrid Map Densely Cross-Referenced to the Recombination Map: A … - Full text - MIT Libraries
LB Rowe, ME Barter, JA Kelmenson, JT Eppig - Genome Research, 2003 - genome.org
... Bold locus symbols indicate markers that link with significant LOD to the rest of
the ... proximal end of Chr 9. Note that AA987181 is an EST for Hoxa9, which has ...
Cited by 11 - Web Search - genome.org - pubmedcentral.nih.gov - dx.doi.org - all 7 versions »

The HoxB 1 hexapeptide is a prefolded domain: Implications for the Pbx 1/Hox interaction - Full text - MIT Libraries
CM Slupsky, DB Sykes, GL Gay, BD Sykes - Protein Science, 2001 - proteinscience.org
... 1991), whereas the t(7;11) translocation joins the Nucleoporin98 gene with HoxA9,
resulting in ... close to 1 Å), this is to be expected because the rest of the ...
Cited by 7 - Web Search - protsci.highwire.org - dx.doi.org - ncbi.nlm.nih.gov - all 8 versions »

Text-Based Gene Profiling with Domain-Specific Views
P Glenisson, B Coessens, SV Vooren, Y Moreau, BD … - SWDB, 2003 - cs.uic.edu
... HNRPD 3184 NAB1 4664 HOXA9 3205 NRF 55922 HOXC9 3225 NSEP1 4904 HOXD9 3235 PIASY
51588 KLF2 51713 RBAK 57786 MADH1 4086 REST 5978 MADH5 4090 RING1 6015 ...
Cited by 1 - View as HTML - Web Search

Regeneration of the urodele limb: A review - Full text - MIT Libraries
HLD Nye, JA Cameron, EAG Chernoff, DL Stocum - Developmental Dynamics, 2003 - doi.wiley.com
Page 1. REVIEWS A PEER REVIEWED FORUM Regeneration of the Urodele Limb: A Review
Holly LD Nye, 1 Jo Ann Cameron, 1 Ellen AG Chernoff, 2 and David L. Stocum 2 * ...
Cited by 15 - Web Search - ncbi.nlm.nih.gov

Sex determination and differentiation - Full text - MIT Libraries
DT MacLaughlin, PK Donahoe - N Engl J Med, 2004 - nejm.org
... 7 Communication between oocytes and the surrounding granulosa cells occurs when
the rest- ing primordial follicles are ... Deficiency of WNT-4, HOXA9, 10, 11, 13 ...
Cited by 15 - View as HTML - Web Search - uni-marburg.de - fiu.edu - ncbi.nlm.nih.gov - all 7 versions »

Expression profiles of acute lymphoblastic and myeloblastic leukemias with ALL-1 rearrangements - Full text - MIT Libraries
T Rozovskaia, O Ravid-Amir, S Tillib, G Getz, E … - Proceedings of the National Academy of Sciences, 2003 - pnas.org
... with t(4;11) ALLs, is similar in these three tumors and in the rest of t ... of
hematopoietic progenitors by MLL-GAS7 in the absence of Hoxa7 or Hoxa9 Blood, April ...
Cited by 23 - Web Search - 171.66.122.165 - santafe.edu - weizmann.ac.il - all 10 versions »

Leukaemia stem cells and the evolution of cancer-stem-cell research - Full text - MIT Libraries
BJP Huntly, DG Gilliland - Nature Reviews Cancer, 2005 - nature.com
... Cohnheim 150 years ago (TIMELINE) that cancer results from the activation of dormant
embryonic-tissue rem- nants 14,15 .This ‘embryonal-rest hypothesis’of ...
Cited by 3 - Web Search - biochem.northwestern.edu - ncbi.nlm.nih.gov

Molecular phenotyping of the immune system by microarray analysis.
J Geliebter, A Mittelman, RK Tiwari - Cancer Invest, 2003 - taylorandfrancis.metapress.com
... II CD11c, CD33, zyxin leptin receptor, HOXA9 [56] “Germinal center
B cell” DLBCL vs. “in vitro activated B cell” DLBCL CD ...
Cited by 1 - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

Comparative genomics provides evidence for an ancient genome duplication event in sh
JS Taylor, Y Van de Peer, I Braasch, A Meyer - Phil. Trans. R. Soc. Lond. B, 2001 - journals.royalsoc.ac.uk
... The goal of our study was to use a phylogenetic approach to evaluate the hypothesis
that the `extra’ Hox genes and the rest of the genome in ¢shes were ...
Cited by 102 - Web Search - evolutionsbiologie.uni-konstanz.de - mit.edu - ncbi.nlm.nih.gov - all 5 versions » - Get it from MIT Libraries

Inherited thrombocytopenias: toward a molecular understanding of disorders of platelet production
AE Geddis, K Kaushansky - Curr Opin Pediatr, 2004 - co-pediatrics.com
... in HSC [31-34], and by manipulating the levels of HoxB4 and HoxA9 in mice ... At rest,
the discoid shape of the circulating platelet is maintained by a spectrin ...
Cited by 2 - Web Search - co-pediatrics.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

Class Discovery in Acute Lymphoblastic Leukemia using Gene Expression Analysis
U Einav, U Einav, PEDPE Domany, PEDPE Domany - 2003 - weizmann.ac.il
Page 1. Class Discovery in Acute Lymphoblastic Leukemia using Gene Expression
Analysis Uri Einav Uri Einav Uri Einav Uri Einav M.Sc. ...
Cited by 1 - View as HTML - Web Search - weizmann.ac.il

Role of Polycomb Group Proteins in Stem Cell Self-Renewal and Cancer
J Gil, D Bernard, G Peters - DNA and Cell Biology, 2005 - dx.doi.org
... Overexpression of Hoxa9/ Meis-1 in either wild-type or Bmi1 / fetal liver cells ... Ink4a
and p19 Arf triggered a combination of cell cycle ar- rest and apoptosis ...
Web Search - liebertonline.com - liebertonline.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

The molecular evolution of development - Full text - MIT Libraries
MD Purugganan - BioEssays, 1998 - doi.wiley.com
... Drosophila abd-A Drosophila Antp Drosophila Ubx HoxB8, HoxC8, HoxD8 HoxA9, HoxB9,
HoxC9 ... 1.02 10 9 nonsynonymous substitutions/ site/year, while the rest of the ...
Cited by 42 - Web Search - purugganan.gnets.ncsu.edu - ncsu.edu - ncbi.nlm.nih.gov - all 5 versions »

Hoxb8 is required for normal grooming behavior in mice - Full text - MIT Libraries
JM Greer, MR Capecchi - Neuron, 2002 - capecchi.genetics.utah.edu
... et transition behavior between periods of rest and activity al ... water
transitional behavior between periods of rest and activ- and ...
Cited by 21 - View as HTML - Web Search - northwestern.edu - ingentaconnect.com - all 6 versions »

Tissue Classification Through Analysis of Gene Expression Data Using A New Family of ART …
I INTRODUCTION - ieeexplore.ieee.org
Page 1 0-7803-7278-6/02/$ 10.00 ©2002 IEEE 300 Tissue Classification Through Analysis
of Gene Expression Data Using A New Family of ART Architectures Rui Xu1 ...
Web Search

Immortalization and leukemic transformation of a myelomonocytic precursor by retrovirally transduced … - Full text - MIT Libraries
C Lavau, SJ Szilvassy, R Slany, ML Cleary - The EMBO Journal, 1997 - embojournal.npgjournals.com
... In other settings, the closely related HOXA9 gene is a target of chromosomal
translocations in ... ml) and SCF (100 ng/ml) and the cells allowed to `rest' for ~20 ...
Cited by 118 - Web Search - nature.com - emboj.org - ncbi.nlm.nih.gov - all 6 versions »

Analysis of translocations that involve the NUP98 gene in patients with 11p15 chromosomal …
YN Kobzev, J Martinez-Climent, S Lee, J Chen, JD … - GENES, CHROMOSOMES & CANCER, 2004 - doi.wiley.com
... with hybridization with the other 2 BACs, which spanned the rest of the ... who found,
using microarray analysis, that trans- fecting the NUP98–HOXA9 fusion gene ...
Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

Role of homeobox genes in normal mammary gland development and breast tumorigenesis
H Chen, S Sukumar - J Mammary Gland Biol Neoplasia, 2003 - kluweronline.com
... of mR- NAs from mammary gland of different developmen- tal stages reveal a very
similar expression pattern for several homeobox genes, including Hoxa9, b7, b9 ...
Cited by 4 - Web Search - springerlink.com - ingentaconnect.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

The biology of CML blast crisis - Full text - MIT Libraries
C Cycle, S Transduction, G Expression - Blood, 2004 - bloodjournal.org
... effects induced by endogenous BCR/ABL in the CD34 + and CD34 - subset may rest in
its ... up-regulated by BCR/ABL in CML-BC are Evi-1 and HOXA9, 2 transcription ...
Web Search - dx.doi.org - bloodjournal.org

Molecular aspects of sex differentiation
WY Chan, OM Rennert - Current molec Med, 2002 - ingentaconnect.com
... The Hox transcription factors are expressed along the length of the developing
Müllerian duct and continue in the Fallopian tubes (Hoxa9), uterus (Hoxa10 ...
Cited by 1 - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

PCR-survey of hox-genes of the zebrafish: New sequence information and evolutionary implications - Full text - MIT Libraries
BY Misof, MJ Blanco, GP Wagner - The Journal of Experimental Zoology, 1996 - doi.wiley.com
Page 1. THE JOURNAL OF EXPERIMENTAL ZOOLOGY 274193-206 (1996) PCR-Survey of
Hox-Genes of the Zebrafish: New Sequence Information and Evolutionary Implications ...
Cited by 13 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov

An EM Algorithm for Joint Feature Selection and Classifier Design
B Krishnapuram, L Carin, A Hartemink - ee.duke.edu
... In Sec- tion II, we formalize the basic problems of pattern recognition and feature
selection, introduce the notation used in the rest of the paper, and ...
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Dynamic expression pattern of Hoxc8 during mouse early embryogenesis.
Y KWON, J SHIN, HW PARK, MH KIM - Anat Rec A Discov Mol Cell Evol Biol, 2005 - doi.wiley.com
... However, the rest of the area including the brain (slices 1 and 2) and ... cells express
a novel, tumor necrosis factor-alpha-reg- ulated variant of HOXA9. ...
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Children and adults with acute lymphoblastic leukaemia have similar gene expression profiles. - Full text - MIT Libraries
E Kuchinskaya, M Heyman, D Grander, M Linderholm, … - European Journal Of Haematology, 2005 - blackwell-synergy.com
... The rest of the samples were stored in liquid nitrogen prior to RNA isolation. ... The
other cluster had low or absent gene expression compared to the rest of the ...
Web Search - blackwell-synergy.com - ejh.dk - ncbi.nlm.nih.gov

Role of cancer-associated stromal fibroblasts in metastatic colon cancer to the liver and their … - Full text - MIT Libraries
H Nakagawa, S Liyanarachchi, RV Davuluri, H Auer, … - Oncogene, 2004 - nature.com
... expressed genes, to test whether the genes as a group in that category were up-
or down-regulated compared with the rest. ... Hs.127428 HOXA9 Class I homeoprotein ...
Cited by 2 - Web Search - nature.com - ncbi.nlm.nih.gov

Tissue classification through analysis of gene expression data using a new family of ART …
R Xu, G Anagnostopoulos, D Wunsch - Proceedings of the 2002 International Joint Conference on …, 2002 - my.fit.edu
... U82759 GB DEF = Homeodomain protein HoxA9 mRNA D49950 Liver mRNA for interferon-
gamma ... 0.7, T36: 0.7) much higher than the average of the rest tumor tissues ...
Cited by 2 - View as HTML - Web Search - ieeexplore.ieee.org

Evolution of median fin modules in the axial skeleton of fishes
PM Mabee, PL Crotwell, NC Bird, AC Burke - Journal of Experimental Zoology (Molecular Development and …, 2002 - doi.wiley.com
... along the body axis, a limited degree of connectivity to the rest of the ... aculeatus)
(Ahn and Gibson, ’99a,b). Similar to zebrafish, Hoxb5, Hoxa9, and Hoxa10 ...
Cited by 8 - Web Search - usd.edu - ncbi.nlm.nih.gov - Get it from MIT Libraries

Interpretation of microarray expression data using ontology browsing
A Bresell, L Universitet, S Linkoping - ifm.liu.se
... 9 1.4 Thesis outline The rest of the thesis is organised as follow: ... But before we
do that we have to define a terminology to use in the rest of the thesis. ...
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BIOINFORMATICS
D Haussler - BIOINFORMATICS, 2000 - bioinformatics.oupjournals.org
Page 1. VOLUME 16 NUMBER 10 OCTOBER 2000 PAGES 906–914 GO BACK CLOSE FILE
BIOINFORMATICS Electronic edition http://www.bioinformatics.oupjournals.org ...
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The duplication of the Hox gene clusters in teleost fishes
SJ Prohaska, PF Stadler - Th. Biosci, 2004 - bioinf.uni-leipzig.de
Page 1. The Duplication of the Hox Gene Clusters in Teleost Fishes Sonja J. Prohaska
a and Peter F. Stadler a,b a Lehrstuhl fur Bioinformatik ...
Cited by 5 - View as HTML - Web Search - bioinf.uni-leipzig.de

[BOOK] Molecular biology of cancer
F Macdonald, CHJ Ford, AG Casson - 2004 - print.google.com
... & Francis 74 Rolark Drive Scarborough, Ontario M1R 402, Canada Toll Free Tel.: +
1 877 226 2237; E-mail: tal_fran@istar.ca Distributed in the rest of the world ...
Cited by 10 - Web Search - Get it from MIT Libraries - Library Search

Human chromosome 7 circa 2004: a model for structural and functional studies of the human genome - Full text - MIT Libraries
SW Scherer, ED Green - Human Molecular Genetics, 2004 - hmg.oupjournals.org
... with the other accumulating genomic information about these regions and the rest
of the ... 112,113), t(7;11)(p15;p15) involving fusion of HOXA9 and NUP98 in human ...
Cited by 1 - Web Search - hmg.oupjournals.org - ncbi.nlm.nih.gov

Signaling and Transcriptional Changes Critical for Transformation of Human Cells by Simian Virus 40 … - Full text - MIT Libraries
CS Moreno, S Ramachandran, DG Ashby, N Laycock, CA … - Cancer Research, 2004 - cancerres.aacrjournals.org
... statistically over-represented in a gene list compared with the rest of the ... time
that ST induces expression of the developmental HOX genes HOXA9, HOXB6, and ...
Web Search - cancerres.aacrjournals.org - ncbi.nlm.nih.gov

Mechanisms of BCR–ABL in the pathogenesis of chronic myelogenous leukaemia - Full text - MIT Libraries
R Ren - Nature Reviews Cancer, 2005 - nature.com
... cells,and the interactions of BCR–ABL- expressing cells with the rest of the in ... results
from the t(8;21)(q22;q22) translocation; NUP98–HOXA9,which results ...
Cited by 2 - Web Search - nature.com - ncbi.nlm.nih.gov

[BOOK] Regeneration: stem cells and beyond
E Heber-Katz - 2004 - print.google.com
... What sets them apart from the rest is their ability to regenerate complex structures
by dedifferentiation (Stocum 1995; Mescher 1996; Brockes 1997). ...
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MONDAY, 7 APRIL 2003
UK Bath - ingentaconnect.com
Page 1. MONDAY, 7 APRIL 2003 Oral Communication Haematological Biology
1 Functional responses to expression of TEL/PDGFbetaR are ...
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