Xbp1, a stress-induced transcriptional repressor of the Saccharomyces cerevisiae Swi4/Mbp1 family - Full text - MIT Libraries
B Mai, L Breeden - Mol. Cell. Biol, 1997 - mcb.asm.org
... 11 Copyright © 1997, American Society for Microbiology Xbp1, a Stress-Induced
Transcriptional Repressor of the ... There are binding sites for Xbp1 in the G ...
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Predicting Genetic Regulatory Response Using Classification
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0411028, 2004 - arxiv.org
... SRA3), XBP1 and GCN20. It is interesting to note that while the presence and absence
of binding sites of some very important stress factors like MSN2 and HSF1 ( ...
Cited by 10 - View as HTML - Web Search - cs.princeton.edu - math.biu.ac.il - cs.utsa.edu - all 14 versions »

BIOINFORMATICS - Full text - MIT Libraries
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - BIOINFORMATICS, 2004 - bioinformatics.oupjournals.org
Page 1. VOLUME 20 SUPPLEMENT 1 4 AUGUST 2004 PAGES i232–i240 BIOINFORMATICS
Electronic edition http://bioinformatics.oupjournals.org ...
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Predicting Genetic Regulatory Response using Classification: Yeast Stress Response
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0406016, 2004 - springerlink.com
... The top five high scoring parents (based on AS) were USV1, XBP1, PPT1, GIS1 ... 20],
GCN4 (regulator of HOG pathway and amino acid metabolism), HSF1 (heat-shock ...
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Regulatory Sequence Analysis of Coclustering Genes
A TFBS - ahavj.ahajournals.org
... HSF1, 4/52=8, 2/29=7, 0/11=0, 1/6=17, 1/16=6, 1/3=33, 0/4=0, 4/9=44, 0/1=0,
1/1=100. ... XBP1, 5/52=10, 0/29=0, 0/11=0, 0/6=0, 2/16=13, 2/3=67, 0/4=0, 1/9=11, 0/ ...
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Phosphorylation of the{alpha}-Subunit of the Eukaryotic Initiation Factor-2(eIF 2 {alpha}) Reduces … - Full text - MIT Libraries
HY Jiang, RC Wek - J Biol Chem, 2005 - jbc.org
... However, the apparent ER stress did not induce XBP1 mRNA splicing by IRE1 ... PEK (Perk)-/-,
GCN2-/-, eIF2 -A/A, ATF4-/-, ATF3-/-, CHOP-/-, and HSF1-/- MEF cells ...
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ER stress regulation of ATF6 localization by dissociation of BiP/GRP78 binding and unmasking of … - Full text - MIT Libraries
J Shen, X Chen, L Hendershot, R Prywes - Dev. Cell, 2002 - biochem.wisc.edu
... cently, the transcription factor XBP1 was identified as a mammalian target of IRE1
splicing, although genes ... regulated by ER stress through XBP1 have not been ...
Cited by 73 - View as HTML - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov - all 4 versions »

Stable Binding of ATF6 to BiP in the Endoplasmic Reticulum Stress Response - Full text - MIT Libraries
J Shen, EL Snapp, J Lippincott-Schwartz, R Prywes - Mol Cell Biol, 2005 - mcb.asm.org
... These results demonstrate the redundancy of the XBP1, ATF6, and additional ... This
competition model resembles the regulation of HSF1 by cytoplasmic chaperones (26 ...
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Transcriptional Factor Mutations Reveal Regulatory Complexities of Heat Shock and Newly Identified … - Full text - MIT Libraries
JM Treger, AP Schmitt, JR Simon, K McEntee - J Biol Chem, 1998 - jbc.org
... of YER169W, singly or in combination with mutations in the HSF1, MSN2, and ... STE23,
STF2, SUA7, TDH3, TFS1, TPS1, TPS2, TPS3, TSL1, UTR4, SBP1, XBP1, YAT1, YRB1 ...
Cited by 39 - Web Search - jbc.org - dx.doi.org - ncbi.nlm.nih.gov

Combining pattern discovery and discriminant analysis to predict gene co-regulation - Full text - MIT Libraries
N Simonis, SJ Wodak, GN Cohen, J van Helden - Bioinformatics, 2004 - bioinformatics.oupjournals.org
Page 1. 1 Combining pattern discovery and discriminant analysis to predict gene
co-regulation Simonis, N. 1,* ,Wodak, SJ 1 , Cohen, GN 2 & van Helden, J. 1 ...
Cited by 7 - Web Search - cs.wayne.edu - ingentaconnect.com - ncbi.nlm.nih.gov - all 8 versions »

Transcriptional networks: reverse-engineering gene regulation on a global scale
G Chua, MD Robinson, Q Morris, TR Hughes - Current Opinion in Microbiology, 2004 - www-bac.esi.umontreal.ca
... binding fac tor PAC/RRPE-binding factors RAP1,FHL1 HAC1,ROX1 RLM1 XBP1 RPN4 PHO4
HAP2 ... in rich medium, did not bind to their known targets (HAL9, HSF1, MSN1, MSN2 ...
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Oxidative stress responses of the yeast Saccharomyces cerevisiae - Full text - MIT Libraries
DJ Jamieson - Yeast, 1998 - doi.wiley.com
Page 1. YEAST Yeast 14, 1511–1527 (1998) Oxidative Stress Responses of the
Yeast Saccharomyces cerevisiae DEREK J. JAMIESON* Department ...
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Identification of genes modulated in multiple myeloma using genetically identical twin samples - Full text - MIT Libraries
NC Munshi, T Hideshima, D Carrasco, M Shammas, D … - Blood, 2004 - bloodjournal.org
... EEF1A1 J04617 29.9 XBP1 Z93930 26.8 KRT8 X74929 17.9 ... HAX1 U68566 11.3 HSF1 M64673
2.9 List of genes selected based on their potential functional categories. ...
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Genome wide analysis of common and specific stress responses in adult drosophila melanogaster - Full text - MIT Libraries
F Girardot, V Monnier, H Tricoire - BMC Genomics, 2004 - biomedcentral.com
... either pro- (Jun, p53) or anti-apoptotic effects (NF-κB, HSF1) [2]. In ... Interestingly,
in our genetic experiments, halving the dosage of the Xbp1 gene resulted ...
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Motif Discovery Through Predictive Modeling of Gene Regulation
M Middendorf, A Kundaje, M Shah, Y Freund, CH … - springerlink.com
... The heat shock factor HSF1—which binds to the heat shock element (HSE)—plays a ... The
top 10 regulators include TPK1, USV1, AFR1, XBP1, ATG1, ETR1, SDS22, YAP4 ...
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BMC Genomics - Full text - MIT Libraries
F Girardot, V Monnier, H Tricoire - BMC Genomics, 2004 - biomedcentral.com
Page 1. ...
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IRE1-Independent Gain Control of the Unfolded Protein Response - Full text - MIT Libraries
JH Leber, S Bernales, P Walter - PLoS Biol, 2004 - dx.doi.org
... Pennsylvania, United States) and contains the R222A allele of HSF1 (Bulman et ... mRNA
splicing and S2P-mediated ATF6 cleavage merge to regulate XBP1 in signaling ...
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Stress Granule Assembly Is Mediated by Prion-like Aggregation of TIA-1 {boxd} - Full text - MIT Libraries
N Gilks, N Kedersha, M Ayodele, L Shen, G … - Mol Biol Cell, 2004 - molbiolcell.org
... transfectants. Activation of the unfolded protein response causes the splicing
of XBP1 mRNA to its smaller, active form. Primers ...
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IRE1-Independent Gain Control of the Unfolded Protein Response - Full text - MIT Libraries
S Material, J Leber, S Bernales, P Walter - PLoS Biol, 2004 - pubmedcentral.nih.gov
... Pennsylvania, United States) and contains the R222A allele of HSF1 (Bulman et ... mRNA
splicing and S2P-mediated ATF6 cleavage merge to regulate XBP1 in signaling ...
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Endoplasmic reticulum stress triggers an acute proteasome-dependent degradation of ATF 6 - Full text - MIT Libraries
M Hong, M Li, C Mao, AS Lee - Journal of Cellular Biochemistry, 2004 - doi.wiley.com
... Interest- ingly, heat shock factor 1 (HSF1), which activates the transcription of
the heat shock- inducible Hsp70 gene, is also sensitive to proteasome ...
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3 The yeast response to heat shock
A Trott, KA Morano - springerlink.com
... 1986). In S. cerevisiae, HSF is encoded by a single, essential gene, HSF1
(Sorger and Pelham 1988; Wiederrecht et al. 1988). ... Hsf1 protein ...
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A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... TCF11MAFG 01 TCF11/MafG heterodimers TH1E47 01 Thing1/E47 heterodimer TST1 01
POU-factor Tst-1/Oct-6 USF 02 Upstream stimulating factor VMAF 01 v-Maf XBP1 01 ...
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SUPPLEMENTARY DATA FOR CLASSIFICATION, SUBTYPE DISCOVERY, AND PREDICTION OF OUTCOME IN PEDIATRIC …
I Section, E Methods, II Section, P Dataset - stjuderesearch.org
Page 1. SUPPLEMENTARY DATA FOR CLASSIFICATION, SUBTYPE DISCOVERY, AND PREDICTION
OF OUTCOME IN PEDIATRIC ACUTE LYMPHOBLASTIC LEUKEMIA ...
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Supplementary information is available on Nature’s World-Wide Web site (http://
DNA Prepare - nature.com
Page 1. © 1999 Macmillan Magazines Ltd 15. Ohta, T. An examination of the
generation-time effect on molecular evolution. Proc. Natl. Acad. Sci. ...
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BIOINFORMATICS - Full text - MIT Libraries
N Simonis, SJ Wodak, GN Cohen, J van Helden - BIOINFORMATICS, 2004 - bioinformatics.oupjournals.org
... RPN4 11 5.73 10 0.91 0.88 0.895 LEU3 8 5.44 9 0.88 0.91 0.895 XBP1 5 1.34 5 0.8
0.98 0.89 GAT1 9 6.86 7 0.78 0.98 0.88 HMRA1 5 2.44 12 0.8 0.95 0.875 ...
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Dynamic workflows and advanced data management for problem solving environments
D Moisa, N Ramakrishnan, CJ Ribbens, S Varadarajan … - 2004 - scholar.lib.vt.edu
Page 1. Dynamic Workflows and Advanced Data Management for Problem Solving
Environments Dan Moisa Department of Computer Science ...
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Evaluating Machine Learning Algorithms Used to Infer Gene Regulatory Network Structure
D Handley - andrew.cmu.edu
Page 1. Evaluating Machine Learning Algorithms Used to Infer Gene Regulatory
Network Structure by Dan Handley Submitted to the Department ...
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