Blind Source Separation and the Analysis of Microarray Data - Full text - MIT Libraries
P Chiappetta, MC Roubaud, B Torresani - Journal of Computational Biology, 2004 - dx.doi.org
Page 1. JOURNAL OF COMPUTATIONAL BIOLOGY Volume 11, Number 6, 2004 © Mary Ann Liebert,
Inc. Pp. 1090–1109 Blind Source Separation and the Analysis of ...
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Separation de Sources pour l’Analyse de Donnees d’Expression
P Chiappetta, MC Roubaud, B Torresani - irisa.fr
... linéaires (par exemple, les coefficients de corrélation entre ESR1, GATA3,
XBP1 et MYB sont compris entre j §ph " k et h " lQm ). ...
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Computational analysis of composite regulatory elements - Full text - MIT Libraries
P Qiu, W Ding, Y Jiang, JR Greene, L Wang - Mammalian Genome, 2002 - springerlink.com
... 24.6 CREB XBP1 454.6 SRF YY1 123.0 MZF1 NFKB 45.6 CDP PBX1 24.3 ... 24.1 NFAT
NFKAPPAB65 431.3 NFAT YY1 111.4 MYB RFX1 43.7 CEBP RORA2 23.8 ...
Cited by 10 - Web Search - ncbi.nlm.nih.gov

Gene expression profiles of poor-prognosis primary breast cancer correlate with survival - Full text - MIT Libraries
F Bertucci, V Nasser, S Granjeaud, F Eisinger, J … - Human Molecular Genetics, 2002 - hmg.oupjournals.org
... Subtypes of ER-positive breast tumours have recently been reported by others using
discriminator genes such as ESR1, GATA3, XBP1 or MYB, also present in our ...
Cited by 41 - Web Search - hmg.oupjournals.org - ncbi.nlm.nih.gov

Conservation of Breast Cancer Molecular Subtypes and Transcriptional Patterns of Tumor Progression … - Full text - MIT Libraries
K Yu, CH Lee, PH Tan, P Tan - Clinical Cancer Research, 2004 - clincancerres.aacrjournals.org
... Asian-Chinese population within the Caucasian data set, after removal of several
well-known ER marker genes (ie, ESR1, GATA3, TFF1, TFF3, XBP1, MYB, IGFR1, MUC1 ...
Cited by 1 - Web Search - clincancerres.aacrjournals.org - ncbi.nlm.nih.gov

[PS] Classification mixte pour l’analyse de donnees d’expression
P Chiappetta, MC Roubaud, B Torresani - Proc. JOBIM’02, 2002 - cmi.univ-mrs.fr
... Le gène ESR1 est regroupé avec les gènes ANG, C4A, EGF, GLI3, MUC1, KRT19, BCL2,
GATA3, ILF1, MYB, SMARCA2, THBS1, VIL2, XBP1, IGFBP2, AMFR, PLAT,FOS. ...
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Insights into the multistep transformation of MGUS to myeloma using microarray expression analysis - Full text - MIT Libraries
FE Davies, AM Dring, C Li, AC Rawstron, MA Shammas … - Blood, 2003 - bloodjournal.org
... was expressed at similar or increased levels compared with XBP1, whereas in MM ... in
lymphoid development, which is related to MLLT2; v-myb myeloblastosis viral ...
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The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with … - Full text - MIT Libraries
HE Cunliffe… - Cancer Research - thep.lu.se
... 5A, vi, the estrogen-induced genes in cluster v contain four ER status genes, ASAHI,
NRIP1, MYB, and XBP1, a larger number than expected by chance (P 4.7 10 3 ...
Cited by 13 - View as HTML - Web Search - thep.lu.se - cancerres.aacrjournals.org - ncbi.nlm.nih.gov - all 5 versions »

Progress in Hematology
JD Shaughnessy Jr - cardenjennings.metapress.com
... Only 2 genes, XBP1 and IRF4, were up-regulated transcription factors. ... compared with
tonsil PCs.Additional transcription fac- tors, including the myb-like gene ...
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INSIGHTS INTO THE MULTISTEP TRANSFORMATION OF MGUS TO MYELOMA USING MICROARRAY EXPRESSION ANALYSIS
KC Anderson, AF Building - bloodjournal.org
... similar or increased levels to XBP1, whereas in MM PCs it is expressed at a ... related
to MLLT2; v-myb myeloblastosis viral oncogene homolog, MYB (+1.97), an ...
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Sparse graphical models for exploring gene expression data
A Dobra, C Hans, B Jones, JR Nevins, M West - J. Multiv. Anal, 2004 - samsi.info
Page 1. Technical Report #2003-7 October 23, 2003 Statistical and Applied Mathematical
Sciences Institute PO Box 14006 Research Triangle Park, NC 27709-4006 ...
Cited by 18 - View as HTML - Web Search - stat.duke.edu - stat-ftp.berkeley.edu - portal.acm.org - all 9 versions »

Breast cancer oestrogen independence mediated by BCAR 1 or BCAR 3 genes is transmitted through … - Full text - MIT Libraries
L Dorssers, T van Agthoven, A Brinkman, J … - Breast Cancer Res, 2004 - dx.doi.org
... Undisputed early targets are TFF1, CTSD, CCND1, PGR, PDZK1 and MYB, whereas induction
of IGFBP4 by oestrogen was reported to be ... 1, for example MYC, XBP1 and MGP ...
Web Search - pubmedcentral.nih.gov - bmc.ub.uni-potsdam.de - breast-cancer-research.com - all 7 versions »

Gene expression signature of estrogen receptor α status in breast cancer - Full text - MIT Libraries
M Abba, Y Hu, H Sun, J Drake, S Gaddis, K Baggerly … - BMC Genomics, 2005 - biomedcentral.com
... ESR1), GATA-binding protein 3 (GATA3), mucin 1 (MUC1), v-myb-myeloblastosis viral
oncogene homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17 ...
Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

BMC Genomics - Full text - MIT Libraries
MC Abba, Y Hu, H Sun, JA Drake, S Gaddis, K … - BMC Genomics, 2005 - biomedcentral.com
... GATA-bind- ing protein 3 (GATA3), mucin 1 (MUC1), v-myb-myeloblast- osis viral oncogene
homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17- β ...
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Graphical model-based gene clustering and metagene expression analysis
A Dobra, Q Wang, M West - 2004 - isds.duke.edu
Page 1. A. Dobra et al. Graphical model-based gene clustering and metagene
expression analysis Adrian Dobra, Quanli Wang and Mike West ...
Cited by 1 - View as HTML - Web Search - stat.duke.edu - stat.duke.edu - isds.duke.edu - all 5 versions »

Large scale molecular analysis identifies genes with altered expression in salivary adenoid cystic … - Full text - MIT Libraries
HF Frierson, AK El-Naggar, JB Welsh, LM Sapinoso, … - Am J Pathol, 2002 - ajp.amjpathol.org
... Known genes that were the most specific for ACC relative to the other car-
cinomas included versican, TGF- type III receptor, and c-myb. ...
Cited by 13 - Web Search - ajp.amjpathol.org - ingentaconnect.com - ncbi.nlm.nih.gov - all 5 versions »

Medical Immunology - Full text - MIT Libraries
C Beadling, KA Smith - Medical Immunology, 2002 - bmc.ub.uni-potsdam.de
... myb CREM CREM CREM SCML2 X-box BP1 c-myb X-box BP1 c-myb MAX-IP ... including the signaling
proteins SLP76 and RGS1, the transcription factors IRF4 and XBP1, and 5 ...
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Structural organization and classification of the human mucin genes
N Moniaux, F Escande, N Porchet, JP Aubert, SK … - Front Biosci, 2001 - xylian.igh.cnrs.fr
... WAP), elements specific for transcription in hemapoetic cells (BKLF/TEFII, GATA1,
v-Myb, c-Myb, and MZF1 ... NF-mu-E1, NF-Y, Pu-box, SRY, TCF-1, TdT Inr, XBP1, and W ...
Cited by 57 - Cached - Web Search - bioscience.org - bioscience.org - ncbi.nlm.nih.gov - all 7 versions » - Get it from MIT Libraries

A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... 01 Thing1/E47 heterodimer TST1 01 POU-factor Tst-1/Oct-6 USF 02 Upstream stimulating
factor VMAF 01 v-Maf XBP1 01 X ... VMYB 02 v-Myb Core should be AACGG not AACG ...
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DNA array analysis of interleukin-2-regulated immediate/early genes - Full text - MIT Libraries
C Beadling, K Smith - Medical Immunology, 2002 - dx.doi.org
... Four of the genes (c-myb, CR7, flt3 ligand, TNF-β) were detected with ... the signaling
proteins SLP76 and RGS1, the transcription factors IRF4 and XBP1, and 5 ...
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DNA array analysis of interleukin-2-regulated immediate/early genes - Full text - MIT Libraries
S Material, C Beadling, K Smith - Med Immunol, 2002 - pubmedcentral.nih.gov
... Four of the genes (c-myb, CR7, flt3 ligand, TNF-β) were detected with ... the signaling
proteins SLP76 and RGS1, the transcription factors IRF4 and XBP1, and 5 ...
Web Search

Repression of gene expression by oxidative stress - Full text - MIT Libraries
Y Morel, R Barouki - Biochem J, 1999 - bj.portlandpress.com
... It reported that oxidative stress induced transcription of the XBP1 protein, a
transcription factor that is related to cell cycle regulatory factors. ...
Cited by 103 - View as HTML - Web Search - biochemj.org - dx.doi.org - ncbi.nlm.nih.gov - all 7 versions »

Stable ‘portrait’of breast tumors during progression: data from biology, pathology and genetics
M Lacroix, RA Toillon, G Leclercq - Endocrine-Related Cancer, 2004 - erc.endocrinology-journals.org
... Other genes correlated to ESR1 expression were BCL2, COX6C, CRABP2, ERBB3, FBP1,
HNF3A, HPN, IGFBP2, IGFBP5, MYB, NAT1, SELENBP1, VAV3 and XBP1 (Perou et al. ...
Cited by 1 - Web Search - geocities.com - journals.endocrinology.org - ncbi.nlm.nih.gov - all 6 versions » - Get it from MIT Libraries

The essential transcription factor Reb 1 p interacts with the CLB 2 UAS outside of the G 2/M control … - Full text - MIT Libraries
C Van Slyke, EJ Grayhack - Nucleic Acids Research, 2003 - nar.oupjournals.org
... One yeast protein, the product of YDR026, has significant homology to the myb-like
Reb1p DNA-binding domains, although this ... (30) found that Xbp1 (a stress ...
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Comparison of gene expression changes induced in mouse and human cells treated with direct-acting … - Full text - MIT Libraries
M Islaih, B Li, IA Kadura, JL Reid-Hubbard, JT … - Environmental and Molecular Mutagenesis, 2004 - doi.wiley.com
... Nfe212 Transcription regulation 4.9 4.7 94821_at X-box binding protein 1 Xbp1
Transcription regulation 4.4 3.0 96192_at Transacting transcription factor 3 ...
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Basal and luminal breast cancers: basic or luminous?(review). - Full text - MIT Libraries
D BIRNBAUM, F BERTUCCI, C GINESTIER, R TAGETT, J … - INTERNATIONAL JOURNAL OF ONCOLOGY, 2004 - 147.52.72.117
... transcription factors (eg GATA3, XBP1, ETS-like factors…) were found consistently ...
that the same transcription networks (eg GATA, RUNX, CEBP, MYB, AGO…) and ...
Cited by 2 - View as HTML - Web Search - ncbi.nlm.nih.gov

Interpreting the molecular biology and clinical behavior of multiple myeloma in the context of … - Full text - MIT Libraries
JD Shaughnessy, B Barlogie - Immunological Reviews, 2003 - blackwell-synergy.com
... Only two genes, XBP1 and IRF4, were upregulated EDG transcription factors ... Additional
transcription factors, including the myb-like gene, MYBL1, and the MADS box ...
Cited by 12 - Web Search - blackwell-synergy.com - ncbi.nlm.nih.gov

TranSignal TM Protein/DNA Arrays
PU Manual, MA MA1014 - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays Cat. # MA1010, MA1011, MA1012 Product User
Manual, MA1013 & MA1014, MA1015 Released 09/28/04 Panomics, Inc. ...
View as HTML - Web Search - biocat.de

TranSignal TM GR-TF Interaction Arrays
PU Manual - panomics.com
Page 1. TranSignal TM GR-TF Interaction Arrays GR-TFCat. # MA5061, MA5062 &
MA5063 Product User Manual Released 07/29/04 Panomics, Inc. ...
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The use of genetic microarray analysis to classify and predict prognosis in haematological … - Full text - MIT Libraries
AP Levene, GJ Morgan, FE Davies - Clinical and Laboratory Haematology, 2003 - blackwell-synergy.com
... markers of germinal centre differentiation, such as the nuclear factor A-myb and
BCL ... B cell biology such as syndecan 1, BCMA, PIM2, MUM1/IRF4 and XBP1 and novel ...
Cited by 2 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Transcriptional regulatory cascades controlling plasma cell differentiation - Full text - MIT Libraries
KI Lin, C Tunyaplin, K Calame - Immunological Reviews, 2003 - blackwell-synergy.com
... Blimp-1 also extinguishes genes required for GC function (77), such as BCL-6, AID,
M17, A-MYB and SIAH-2 and it downregulates CXCR5, responsible for B cell ...
Cited by 8 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Identification of new genes differentially expressed in coronary artery disease by expression … - Full text - MIT Libraries
SR Archacki, G Angheloiu, XL Tian, FL Tan, N … - Physiol Genomics, 2003 - intl-physiolgenomics.physiology.org
... This group include genes encoding interferon stimulatory factor-3 , XBP1 (TREB5),
B144 NK ... factor is related to interferon regulatory factor and Myb families of ...
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John D. Shaughnessy Jr Bart Barlogie - Full text - MIT Libraries
JD Shaughnessy Jr - Immunological Reviews, 2003 - ingentaconnect.com
... Only two genes, XBP1 and IRF4, were upregulated EDG transcription factors ... Additional
transcription factors, including the myb-like gene, MYBL1, and the MADS box ...
Web Search

Kuo-I Lin Chainarong Tunyaplin Kathryn Calame - Full text - MIT Libraries
KI Lin - Immunological Reviews, 2003 - ingentaconnect.com
... Blimp-1 also extinguishes genes required for GC function (77), such as BCL-6, AID,
M17, A-MYB and SIAH-2 and it downregulates CXCR5, responsible for B cell ...
Web Search

JBC Papers in Press. Published on October 24, 2001 as Manuscript M107795200
C Kumar-Sinha, S Varambally, A Sreekumar, AM … - jbc.org
Page 1. Molecular Cross-Talk Between the TRAIL and Interferon Signaling Pathways
Chandan Kumar-Sinha, Sooryanarayana Varambally, Arun ...
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Microarray analysis of gene expression in human donor sclera - Full text - MIT Libraries
TL Young, GS Scavello, PC Paluru, JD Choi, EF … - Mol Vis, 2004 - molvis.org
... 1 (Drosophila) NM_032998 death effector domain containing DEDD 1q23.1 NM_003472
DEK oncogene (DNA binding) DEK 6p23 NM_021145 cyclin D binding myb-like DMTF1 ...
Cited by 3 - View as HTML - Web Search - molvis.org - scavello.net - ncbi.nlm.nih.gov

Joint classifier and feature optimization for cancer diagnosis using gene expression data
B Krishnapuram, L Carin, AJ Hartemink - RECOMB, 2003 - portal.acm.org
Page 1. Joint Classifier and Feature Optimization for Cancer Diagnosis Using
Gene Expression Data Balaji Krishnapuram Dept. of Elec. ...
Cited by 7 - Web Search - ee.duke.edu - ee.duke.edu - cs.duke.edu - all 5 versions »

Joint Classifier and Feature Optimization for Comprehensive Cancer Diagnosis Using Gene Expression …
B Krishnapuram, L Carin, AJ Hartemink - cs.duke.edu
Page 1. Title: Joint Classifier and Feature Optimization for Comprehensive
Cancer Diagnosis Using Gene Expression Data Authors: Balaji ...
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Regulation of chromatin structure during thymic T cell development - Full text - MIT Libraries
S Winandy - Journal of Cellular Biochemistry, 2005 - doi.wiley.com
... of cell fate toward that of a non-antibody secreting B lymphocyte through repression
of many plasma cell specific genes (eg, Blimp-1, XBP1) [Fujita et al., 2004 ...
Web Search - ncbi.nlm.nih.gov

REGULATORY MECHANISMS THAT DETERMINE THE DEVELOPMENT AND FUNCTION OF PLASMA CELLS - Full text - MIT Libraries
KL Calame, KI Lin, C Tunyaplin - Annual Review of Immunology, 2003 - immunol.annualreviews.org
... Among the genes required for GC function, Blimp-1 downregulates BCL-6, AID, M17,
A-MYB, and SIAH-2 and CXCR5 (responsible for B cell homing to follicles). ...
Cited by 38 - Web Search - phyto.annualreviews.org - nutr.annualreviews.org - ncbi.nlm.nih.gov - all 6 versions »

An EM Algorithm for Joint Feature Selection and Classifier Design
B Krishnapuram, L Carin, A Hartemink - ee.duke.edu
Page 1. 1 An EM Algorithm for Joint Feature Selection and Classifier Design
1 Balaji Krishnapuram, 1 Lawrence Carin, Fellow, IEEE ...
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Three Genes, Two Species: A Comparative Analysis of Upstream Regulatory Sequences Sufficient to …
M Kirouac, PW Sternberg - etd.caltech.edu
Page 1. Three Genes, Two Species: A Comparative Analysis of Upstream Regulatory
Sequences Sufficient to Direct Vulval Expression in C. elegans and C. briggsae ...
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TranSignal TM Protein/DNA Arrays
CS Version - panomics.com
... Stat6 13 CDP CDP FA S T -1 FA S T -1 Myc-Max Myc-Max Pax-5 Pax-5 Smad
SBE Smad SBE Stat6 Stat6 14 c-Myb c-Myb GAS/ISRE GAS/ISRE
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