Annotating significant pairs of transcription factor binding sites in regulatory DNA - Full text - MIT Libraries
K Rateitschak, T Mueller, M Vingron - In Silico Biol, 2004 - iospress.metapress.com
... score SRF,SRF 2.7 NRF1,NRF1 2.8 TB,COUP 2.9 NRF1,NRF1 2.2 MTF1,NRF1 2.2
NRF1,NRF1 2.7 ... 2.2 ATF6,MYCMAX 1.8 NRSF,PAX5 1.8 ERR1,PITX2 2.2 ...
Cited by 1 - Web Search - bioinfo.de - bioinfo.de - ncbi.nlm.nih.gov

Automatic Annotation of Genomic Regulatory Sequences by Searching for Composite Clusters - Full text - MIT Libraries
OV Kel-Margoulis, TG Ivanova, E Wingender, AE Kel - Pacific Symposium on Biocomputing, 2002 - smi.stanford.edu
... HFH2 (1.00) 3.8 Muscle-specific Tal-1 (0.50), YY-1 (1.0), Oct-1 (0.40), MyoD
(0.80), SRF (1.0), PAX5 (0.80) 5.2 Immune cell specific ...
Cited by 23 - View as HTML - Web Search - www-smi.stanford.edu - helix-web.stanford.edu - ncbi.nlm.nih.gov

When Ets transcription factors meet their partners - Full text - MIT Libraries
A Verger, M Duterque-Coquillaud - BioEssays, 2002 - doi.wiley.com
... 4, the Ets-1/Pax5, Pu-1/Pip, Ets/ Jun-Fos, and SAP-1/SRF structural complexes present
a re- markablysimilarityinoverallorientationandframework.Ineach case, Ets ...
Cited by 26 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

MatInspector and beyond: promoter analysis based on transcription factor binding sites - Full text - MIT Libraries
K Cartharius, K Frech, K Grote, B Klocke, M … - Bioinformatics, 2005 - bioinformatics.oxfordjournals.org
... Different colors denote different transcription factor families (turquoise, SRF;
pink, PAX5; blue, TATA-binding protein factor/TBPF; dark green, CMYB; purple ...
Web Search - bioinformatics.oupjournals.org - ingentaconnect.com - ncbi.nlm.nih.gov - all 5 versions »

[PS] CITATIONS FOR PROTEIN/DNA (REGULATORY) - Full text - MIT Libraries
PDA White, X Ding, JC Vanderspek, JR Murphy, D … - J. Biol. Chem, 2004 - aist.go.jp
... 2001. PD0233 M.Hassler, TJ.Richmond The B-Box Dominates Sap-1/Srf
Interactions in the Structure of the Ternary Complex Embo J.,
Cited by 10 - View as HTML - Web Search - ndbserver.rutgers.edu - ndbserver.rutgers.edu

Crystal Structure of PU. 1/IRF-4/DNA Ternary Complex - Full text - MIT Libraries
CR Escalante, AL Brass, JMR Pongubala, E Shatova, … - Mol. Cell, 2002 - atlas.physbio.mssm.edu
... factor SRF, and the Ets-1 Ets domain with the Pax5 rived in the major groove from
PU.1 and in the minor groove from His56 belonging to IRF-4. ...
Cited by 4 - View as HTML - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov - all 4 versions »

Progress in the molecular biology of Ewing tumors
H KOVAR - Sarcoma, 1998 - dx.doi.org
... family gene and a transcription factor gene . ETS1, GABP a , and FLI1 have recently
been demonstrated to bind to the transcription factor PAX5 in vitro. ...
Cited by 25 - Web Search - taylorandfrancis.metapress.com - ingentaconnect.com

Zebrafish Pax 9 encodes two proteins with distinct C-terminal transactivating domains of different … - Full text - MIT Libraries
S Nornes, I Mikkola, S Krauss, M Delghandi, M … - J Biol Chem, 1996 - jbc.org
... Pax6 has a distinct specificity (31, 48, 65), while Pax2, like Pax5 and Pax8 ... for
other transcription factors such as the serum response factor (SRF) (80), ATF-2 ...
Cited by 27 - Web Search - cmbn.no - jbc.org - ncbi.nlm.nih.gov - all 5 versions »

Recognition of specific DNA sequences - Full text - MIT Libraries
CW Garvie, C Wolberger - Mol. Cell, 2001 - qb.fcen.uba.ar
... (F) Interaction between the MADS box protein SRF (green) and the ETS domain protein
SAP-1 (yellow). ... action is strikingly similar to that between the SRF MADS ...
Cited by 21 - View as HTML - Web Search - wisc.edu - ncbi.nlm.nih.gov - all 4 versions »

Id helix-loop-helix proteins antagonize pax transcription factor activity by inhibiting DNA binding - Full text - MIT Libraries
EC Roberts, RW Deed, T Inoue, JD Norton, AD … - Mol. Cell. Biol, 2001 - mcb.asm.org
... Independent regulation of the two Pax5 alleles during B-cell development. ... amino acids
essential for DNA binding and dimerization in p67 SRF : implications for ...
Cited by 29 - Web Search - pubmedcentral.nih.gov - dx.doi.org - ncbi.nlm.nih.gov - all 6 versions »

A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... Problem SRF C Serum responsive factor Core should be ATGG not CCWT ... RCCAA SRF
01 Serum response factor Core should be CCATATATGG not TATA ...
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Molecular mechanisms in signal transduction and cancer - Full text - MIT Libraries
JL Bos, BMT Burgering - EMBO Reports, 2004 - nature.com
... the C/EBP-α-mediated inactivation of the transcription factor Pax5 (Xie et al ... recently
published work to decipher how serum response factor (SRF) is regulated ...
Web Search - ruummc.med.uu.nl - nature.com - ncbi.nlm.nih.gov

Concurrent opposite effects of an inhibitor of histone deacetylases, Trichostatin-A, on the …
FJ Davis, JB Pillai, M Gupta, MP Gupta - ajpheart.physiology.org
... cardiac myogenic transcription factors such as SRF, MEF2 and members of
GATA family (8, 9, 32). ... in the expression of SRF protein. ...
Web Search

Cloning and Characterization of the Human PAX7 Promoter
OV Murmann, F Niggli, BW Schaefer - Biological Chemistry, 2000 - degruyter.com
... Stayner et al., 1998), whereas other PAX-pro- moters, such as PAX3, PAX5, PAX6 and ...
basic helix-loop-helix proteins) and binding sites for FKH and SRF (Figure 5 ...
Cited by 2 - Web Search - extenza-eps.com - degruyter.de - ncbi.nlm.nih.gov - all 8 versions » - Get it from MIT Libraries

Analysis of Gene Regulatory Regions using Comparative Genomics: From the wet lab to computer and …
J Imbert - ist.inserm.fr
... PRRI contains consensus binding sites for SRF and the NF-κB transcription factor
family (1;7). PRRII is recognized ... transcription factor BSAP/Pax5 (11;15;18;32 ...
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TranSignal TM Protein/DNA Arrays
PU Manual, MA MA1014 - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays Cat. # MA1010, MA1011, MA1012 Product User
Manual, MA1013 & MA1014, MA1015 Released 09/28/04 Panomics, Inc. ...
View as HTML - Web Search - biocat.de

Conditional alleles in mice: Practical considerations for tissue-specific knockouts - Full text - MIT Libraries
KM Kwan - genesis, 2002 - doi.wiley.com
... 1 (44.0) F Koushik et al., 2002* Pax5 4 (20.7) F Horcher et al., 2001 ... 11 (69.5) F
Kist et al., 2002* Srf (serum response factor) unknown F Wiebel et al., 2002* ...
Cited by 27 - Web Search - tagc.univ-mrs.fr - biochem.wisc.edu - ncbi.nlm.nih.gov - all 6 versions »

Thrombin Modulates the Expression of a Set of Genes Including Thrombospondin-1 in Human … - Full text - MIT Libraries
S Data - J. Biol. Chem, 2005 - jbc.org
... the genes of Cluster-3 identifying 11 models; EBOX, EGRF, PAX5, and AP2F ... Transcription
factors such as serum response factor (SRF) and Fos-related antigen-2 ...
Web Search - jbc.org - ncbi.nlm.nih.gov

Analysis of the 2.0 Aa Crystal Structure of the Protein-DNA Complex of the Human PDEF Ets Domain …
Y Wang, L Feng, M Said, S Balderman, Z Fayazi, Y … - pubs.acs.org
Page 1. Articles Analysis of the 2.0 Å Crystal Structure of the Protein -
DNA Complex of the Human PDEF Ets Domain Bound to the ...
Web Search

Expression profiles frame the promoter specificity dilemma of the ETS family of transcription … - Full text - MIT Libraries
PC Hollenhorst, DA Jones, BJ Graves - Nucleic Acids Research, 2004 - nar.oupjournals.org
... and PU.1/PIP1 partnerships appear specific (12–14), SRF can bind DNA cooperatively
with three ETS proteins (ELK1, SAP1, and NET) (1), and PAX5 with five (ETS1 ...
Cited by 1 - Web Search - pubmedcentral.nih.gov - hci.utah.edu - ingentaconnect.com - all 6 versions »

Expressed sequence tag analysis of adult human iris for the NEIBank Project: steroid-response … - Full text - MIT Libraries
G Wistow, SL Bernstein, S Ray, MK Wyatt, A Behal, … - Mol Vis, 2002 - molvis.org
... PCAF associated factor 65 α AF069735 131846 11 1 runt-related transcription factor
1 (AML1) D10570 129914 21q22.3 1 serum response factor (SRF) J03161 155321 ...
Cited by 16 - View as HTML - Web Search - molvis.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Signaling from the IL-2 receptor to the nucleus
JX Lin, WJ Leonard - Cytokine Growth Factor Rev, 1997 - hivmedicine.md
... A PRR,,, PRR,, -3780 -3703 -299 -228 -137 -64 Stat5 Elf-1 SRF Elf-1 GATA-I-Like
NF-k-'B Spl HMG-I(Y) TATA NRE -763 -625 -363 -251 -170 -139 -56 -34 B ...
Cited by 53 - View as HTML - Web Search - ncbi.nlm.nih.gov - Get it from MIT Libraries

POSITIVE VERSUS NEGATIVE SIGNALING BY LYMPHOCYTE ANTIGEN RECEPTORS - Full text - MIT Libraries
JI Healy, CC Goodnow - Annual Review of Immunology, 1998 - immunol.annualreviews.org
... plasma cell transcription factor, BLIMP, and of plasma cell genes syndecan-1 and
J chain, as well as preventing the characteristic decrease in Pax5 and CD72 ...
Cited by 123 - Web Search - immunol.annualreviews.org - ncbi.nlm.nih.gov

HIPK2 Regulates Transforming Growth Factor-ß-Induced c-Jun NH 2-Terminal Kinase Activation and … - Full text - MIT Libraries
TG Hofmann, N Stollberg, ML Schmitz, H Will - Cancer Research, 2003 - intl-cancerres.aacrjournals.org
... Kovac CR, Sepulveda MA, Birshtein BK The interaction of Pax5 (BSAP) with ... Rho family
GTPases RhoA, Rac1, and CDC42Hs regulate transcriptional activation by SRF. ...
Cited by 4 - Web Search - intl-cancerres.aacrjournals.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Functional analysis of the transcription factor ER71 and its activation of the matrix … - Full text - MIT Libraries
L De Haro, R Janknecht - Nucleic Acids Res, 2002 - nar.oupjournals.org
... Genes Dev., 9, 1377–1387.[Abstract]. Garvie,CW, Hagman,J. and Wolberger,C. (2001)
Structural studies of Ets-1/Pax5 complex formation on DNA. Mol. ...
Cited by 3 - Web Search - pubmedcentral.nih.gov - ingentaconnect.com - ncbi.nlm.nih.gov - all 6 versions »

Pluripotent cells (stem cells) and their determination and differentiation in early vertebrate … - Full text - MIT Libraries
H Tiedemann, M Asashima, H Grunz, W Knochel - Dev. Growth Differ, 2001 - blackwell-synergy.com
... and cerebellum. The En genes show overlapping expression with the Pax2,
Pax5 and Pax9 genes in the developing brain. The enhancer ...
Cited by 13 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Transcription factors, normal myeloid development, and leukemia - Full text - MIT Libraries
DG Tenen, R Hromas, JD Licht, DE Zhang - Blood, 1997 - bloodjournal.org
PDF Version of this Article. Citation Map. Email this article to a friend. Similar
articles found in: Blood Online PubMed. PubMed Citation. ...
Cited by 353 - Web Search - bloodjournal.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

The granulocytic inducer C/EBP a inactivates the myeloid master regulator PU. 1: possible role in …
AMK und Poliklinik, III am Klinikum Grosshadern - edoc.ub.uni-muenchen.de
Page 1. Aus der Medizinischen Klinik und Poliklinik III am Klinikum Großhadern
der Universität München, Vorstand: Prof. Dr. med. W. Hiddemann ...
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TranSignal TM Protein/DNA Arrays
CS Version - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays (Column Separation Version) Cat. #
MA1210, MA1211, MA1212l, MA1213 & MA1214, MA1215 Product ...
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