Insights Into Host Responses Against Pathogens from Transcriptional Profiling - Full text - MIT Libraries
RG Jenner, RA Young - Nature Reviews Microbiology, 2005 - nature.com
... BCL3 CCL19 IFN1A CD97 IL15RA CD40 IL2RA CD80 RELA STAT4 REL JUNB IL7R XBP1 CD83
NFKB1 SOD2 CCL5 ITGB8 IL12B PTGIR CASP4 MCL1 STAT5A CCL17 HLA-F RELB IL15 CD86 ...
Web Search - ncbi.nlm.nih.gov - csa.com

Target SNP selection in complex disease association studies - Full text - MIT Libraries
M Wjst - BMC Bioinformatics, 2004 - biomedcentral.com
... A BLAST search follows [10] by scanning for additional motifs not fully included
in TRANSFAC (pu.1, c-maf, c-rel, t-bet, xbp1, STAT6) and of modified exon ...
Cited by 3 - Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

BMC Bioinformatics - Full text - MIT Libraries
M Wjst - BMC Bioinformatics, 2004 - biomedcentral.com
... A BLAST search follows [10] by scanning for additional motifs not fully included
in TRANSFAC (pu.1, c-maf, c-rel, t-bet, xbp1, STAT6) and of modified exon ...
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TranSignal TM GR-TF Interaction Arrays
PU Manual - panomics.com
... 11. REFERENCES 1. Rayet, B. and Gelinas, C. (1999) Aberrant rel/NFkB genes and activity
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OPTIMAL IMPORTANCE SAMPLING FOR QUICK SIMULATION OF HIGHLY RELIABLE MARKOVIAN SYSTEMS
GW Evans, M Mollaghasemi, EC Russell, WE Biles - portal.acm.org
... Then [( ‘p(x) _ /4] 2 (7; = Epl lA(xbP1(x) 0] = Epl [( dP(x) l(x)— )] (W(X) 2
dP1(x) – lA(X)-— dP;(x) /( dP(x) ) dP(z) 2 — — —— d dPf(x) dP1(x; ...
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Predicting Genetic Regulatory Response Using Classification
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0411028, 2004 - arxiv.org
... gene expression dataset, we have two sources of feature information rel- ative to ...
ranking regulators (see Table IV B) include PPT1, TPK1 (SRA3), XBP1 and GCN20 ...
Cited by 10 - View as HTML - Web Search - cs.princeton.edu - math.biu.ac.il - cs.utsa.edu - all 14 versions »

Consensus clustering and functional interpretation of gene-expression data - Full text - MIT Libraries
S Swift, A Tucker, V Vinciotti, N Martin, C Orengo … - Genome Biology, 2004 - dx.doi.org
... required for cellular function. This process is controlled by two
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TranSignal TM Protein/DNA Arrays
PU Manual, MA MA1014 - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays Cat. # MA1010, MA1011, MA1012 Product User
Manual, MA1013 & MA1014, MA1015 Released 09/28/04 Panomics, Inc. ...
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Development of a murine hematopoietic progenitor complementary DNA microarray using a subtracted … - Full text - MIT Libraries
X Ma, T Husain, H Peng, S Lin, O Mironenko, N Maun … - Blood, 2002 - bloodjournal.org
... 3.1 0.22 Tal1 T-cell acute lymphocytic leukemia 1 — — Xbp1 Essential for plasma
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Activating transcription factor 3 is integral to the eukaryotic initiation factor 2 kinase stress … - Full text - MIT Libraries
HY Jiang, SA Wek, BC McGrath, D Lu, T Hai, HP … - Mol. Cell. Biol, 2004 - pubmedcentral.nih.gov
... Among these induced genes is XBP1, the mammalian homologue of yeast HAC1 (55, 59),
which is also thought to function in the transcriptional activation of the ...
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PRDM 1/Blimp-1 is expressed in human B-lymphocytes committed to the plasma cell lineage - Full text - MIT Libraries
G Cattoretti, C Angelin-Duclos, R Shaknovich, H … - The Journal of Pathology, 2005 - doi.wiley.com
... MUM1/IRF-4 SCBT Goat sc-6059 G 1 µ g/ml Ref [21] c-Rel (NF-kB) Oncogene Research
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Expression profiling and breast cancer biology.
L Miller, ET Liu - Breast Disease, 2004 - iospress.metapress.com
... expression of ER alpha and as- sociated genes such as GATA3, XBP1, TFF3 and LIV ... sion,
overexpression, or targeted mutation of genes rel- evant to human disease. ...
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Microarray analysis of gene expression in human donor sclera - Full text - MIT Libraries
TL Young, GS Scavello, PC Paluru, JD Choi, EF … - Mol Vis, 2004 - molvis.org
Page 1. Molecular Vision 2004; 10:163-76 <http://www.molvis.org/molvis/v10/a22>
Received 3 October 2003 | Accepted 16 March 2004 | Published 22 March 2004 ...
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Molecular Cancer - Full text - MIT Libraries
WG Dilley, S Kalyanaraman, S Verma, JP Cobb, JM … - Molecular Cancer, 2005 - bmc.ub.uni-potsdam.de
... Tumor suppressing subtransferable candidate 3 v-rel reticuloendotheliosis viral
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Expression profiling of Drosophila imaginal discs - Full text - MIT Libraries
A Klebes, B Biehs, F Cifuentes, T Kornberg - Genome Biology, 2002 - biomedcentral.com
... must preserve is proportionality, the maintenance of the rel- ative concentration ...
glucosidase II CG9415 1.7 X box binding protein 1,Xbp1, transcription factor ...
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Joint classifier and feature optimization for cancer diagnosis using gene expression data
B Krishnapuram, L Carin, AJ Hartemink - RECOMB, 2003 - portal.acm.org
Page 1. Joint Classifier and Feature Optimization for Cancer Diagnosis Using
Gene Expression Data Balaji Krishnapuram Dept. of Elec. ...
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UPTAKE, LOCALIZATION, AND NONCARBOXYLASE ROLES OF BIOTIN
J Zempleni - Annu. Rev. Nutr, 2005 - arjournals.annualreviews.org
... B/Rel family of transcription factors have been identified: c-Rel, NF- B1 ... abundance
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Non-antigen presenting effects of HLA-B27.
MA Penttinen, P Ekman, K Granfors - Current Molecular Medicine, 2004 - ingentaconnect.com
... (2). NF-κB consists of several subunits - RelA (p65), c- Rel, RelB, p50 ... At least
five genes, GRP78 (Bip), GRP94, CHOP, calreticulin and XBP1 are activated by ...
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BMC Pharmacology - Full text - MIT Libraries
LH Jensen, M Dejligbjerg, LT Hansen, M Grauslund, … - BMC Pharmacology, 2004 - bmc.ub.uni-potsdam.de
... and replication arrest [30] (See Table 3, additional files 3 and 4). Furthermore,
both drugs stimulated expression of the stress-inducible XBP1 gene whose ...
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Subspace Selection for Clustering High-Dimensional Data
C Baumgartner, C Plant, K Kailing, HP Kriegel, P … - Proceedings of the Fourth IEEE International Conference on …, 2004 - doi.ieeecomputersociety.org
... Since our quality criterion is very sensible to areas of different density, it is
suitable to detect rel- evant subspaces in data sets with high percentages of ...
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Expression of the AID protein in normal and neoplastic B cells - Full text - MIT Libraries
L Pasqualucci, R Guglielmino, J Houldsworth, J … - Blood, 2004 - bloodjournal.org
... of post-GC markers such as IRF4 and XBP1, overall suggesting a ... Relationship between
REL amplification, REL function, and clinical and biologic features in ...
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Joint Classifier and Feature Optimization for Comprehensive Cancer Diagnosis Using Gene Expression …
B Krishnapuram, L Carin, AJ Hartemink - cs.duke.edu
Page 1. Title: Joint Classifier and Feature Optimization for Comprehensive
Cancer Diagnosis Using Gene Expression Data Authors: Balaji ...
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TranSignal TM Protein/DNA Arrays
CS Version - panomics.com
Page 1. TranSignal TM Protein/DNA Arrays (Column Separation Version) Cat. #
MA1210, MA1211, MA1212l, MA1213 & MA1214, MA1215 Product ...
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The Making of a Professional Secretory Cell: Architectural and Functional Changes in the ER during B …
L Tagliavacca, T Anelli, C Fagioli, A Mezghrani, E … - Biological Chemistry, 2003 - degruyter.com
... stage-specific chaper- ones and oxidoreductases are expressed or that the rel- ative
abundance ... XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ...
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Endoplasmic reticulum signaling as a determinant of recombinant protein expression - Full text - MIT Libraries
RE Cudna, AJ Dickson - Biotechnology and Bioengineering, 2003 - doi.wiley.com
... followed by IRE1-dependent excision of a small intron from the XBP1 mRNA (Fig ... The
Rel/NF- B family directly activates expression of the apoptosis inhibitor Bcl-x ...
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Functional effects of a natural polymorphism in the transcriptional regulatory sequence of HLA-DQB1 - Full text - MIT Libraries
JS Beaty, KA West, GT Nepom - Mol Cell Biol, 1995 - mcb.asm.org
... element of DRA is known to interact with XBP1, XBP2 and c-Jun; at ... transcripts from
the endogenous DQB1*0301 allele were significantly increased rel- ative to ...
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An EM Algorithm for Joint Feature Selection and Classifier Design
B Krishnapuram, L Carin, A Hartemink - ee.duke.edu
Page 1. 1 An EM Algorithm for Joint Feature Selection and Classifier Design
1 Balaji Krishnapuram, 1 Lawrence Carin, Fellow, IEEE ...
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The use of genetic microarray analysis to classify and predict prognosis in haematological … - Full text - MIT Libraries
AP Levene, GJ Morgan, FE Davies - Clinical and Laboratory Haematology, 2003 - blackwell-synergy.com
... the BCL-2 gene, and chromosome 2p amplifications involving the c-REL gene only ... in
B cell biology such as syndecan 1, BCMA, PIM2, MUM1/IRF4 and XBP1 and novel ...
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JBC Papers in Press. Published on October 24, 2001 as Manuscript M107795200
C Kumar-Sinha, S Varambally, A Sreekumar, AM … - jbc.org
Page 1. Molecular Cross-Talk Between the TRAIL and Interferon Signaling Pathways
Chandan Kumar-Sinha, Sooryanarayana Varambally, Arun ...
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A statistical analysis of the TRANSFAC database.
GB Fogel, DG Weekes, G Varga, ER Dow, AM Craven, … - Biosystems, 2005 - natural-selection.com
... TCF11MAFG 01 TCF11/MafG heterodimers TH1E47 01 Thing1/E47 heterodimer TST1 01
POU-factor Tst-1/Oct-6 USF 02 Upstream stimulating factor VMAF 01 v-Maf XBP1 01 ...
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Opposing Roles for ATF 6 {alpha} and ATF 6 {beta} in Endoplasmic Reticulum Stress Response Gene … - Full text - MIT Libraries
DJ Thuerauf, L Morrison, CC Glembotski - J Biol Chem, 2004 - jbc.org
... and Methods." Intensities of the bands relative to GFP siRNA (rel intensities) were ...
How do ATF6 and collaborate with XBP1 to regulate the temporal induction of ...
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REGULATORY MECHANISMS THAT DETERMINE THE DEVELOPMENT AND FUNCTION OF PLASMA CELLS - Full text - MIT Libraries
KL Calame, KI Lin, C Tunyaplin - Annual Review of Immunology, 2003 - immunol.annualreviews.org
Annual Reviews tagline graphic, ...
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STAT 5 regulates the self-renewal capacity and differentiation of human memory B cells and controls … - Full text - MIT Libraries
FA Scheeren, M Naspetti, S Diehl, R Schotte, M … - Nature Immunology, 2005 - nature.com
... repressor protein Blimp-1 (refs. 5–8), and Xbp1, the gene encoding the
X-box transcription factor XBP-1 (ref. 9). In contrast, memory ...
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Caffeine suppresses metastasis in a transgenic mouse model: a prototype molecule for prophylaxis of …
H Yang, J Rouse, L Lukes, M Lancaster, T Veenstra, … - Clinical & Experimental Metastasis, 2004 - springerlink.com
... 25%) chance of developing dis- tant metastases [5]. The ability to prevent the growth
of dormant disseminated tumor cells into clinically rel- evant tumors ...
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An expression profile of human pancreatic islet mRNAs by Serial Analysis of Gene Expression(SAGE) - Full text - MIT Libraries
C Cras-Meneur, H Inoue, Y Zhou, M Ohsugi, E Bernal … - Diabetologia, 2004 - springerlink.com
... Hs.114648 ERG-1 estrogen regulated gene 1 44 2.471 Hs.268049 HSPC031 hypothetical
protein HSPC031 39 2.190 Hs.149923 XBP1 X-box binding protein 1 38 2.134 ...
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Incoherent dynamics in neutron-matter interaction - Full text - MIT Libraries
L Lanz, B Vacchini - Physical Review A, 1997 - link.aps.org
... specified momentum: N~x!5c#~x!c~x!5 1V (k,P e2~i/"!k*xbP1~k/2 ... observed dynamics,
and thus only the commutator part of the evolution map is of rel-evance: the ...
Web Search - arxiv.org - adsabs.harvard.edu - adsabs.harvard.edu

2004
A Report, U Guide - Occupational Health & Safety - sanraffaele.org
Page 1. Scientific Institute H San Raffaele SCIENTIFIC REPORT 2004 Page 2.
SCIENTIFIC REPORT 2004 2004 Page 3. Edited by Marco E. Bianchi ...
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Genome-wide Association of Haplotype Markers to Gene Expression Levels
A WINDEMUTH, M KUMAR, K NANDABALAN, B KOSHY, C XU, … - Cold Spring Harbor Symposia on Quantitative Biology, 2003 - dx.doi.org
... Second, the most extreme of these statistics across all rel- evant markers is selected
to serve as an overall indication of strength of association, the ...
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Epstein-BarrVirus (EBV) LMP2Ainduces alterations in gene transcription similar to those observed in … - Full text - MIT Libraries
L LMP2Atransgenicmice, L humanB-celllines - BLOOD, 2003 - bugs.mimnet.northwestern.edu
Page 1. NEOPLASIA Epstein-BarrVirus (EBV) LMP2Ainduces alterations in gene
transcription similar to those observed in Reed-Sternberg cells of Hodgkin lymphoma ...
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New Techniques for Clustering Complex Objects
K Kailing - edoc.ub.uni-muenchen.de
Page 1. New Techniques for Clustering Complex Objects Dissertation im Fach
Informatik an der Fakultat fur Mathematik, Informatik ...
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