XBP1 mRNA is induced by ATF6 and spliced by IRE1 in response to ER stress to produce a highly active … - Full text - MIT Libraries
H Yoshida, T Matsui, A Yamamoto, T Okada, K Mori - Cell, 2001 - cellbiology.wustl.edu
... XBP1 mRNA Is Induced by ATF6 and Spliced by IRE1 in Response to ER Stress to
Produce ... Here, we identified the transcription factor XBP1, a ...
Cited by 190 - View as HTML - Web Search - microbio.uab.edu - ingentaconnect.com - all 7 versions »

Exploring relationships in gene expressions: a partial least squares approach
S Datta - Gene Expression, 2001 - ingentaconnect.com
... played by XBP1 on SPO16. Other predictor genes include PDS5 (ORF ... Most of the genes
with known rest of the top 10 predictors were involved in basic ...
Cited by 12 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov - Get it from MIT Libraries

Cellular process classification of human papillomavirus-16-positive SiHa cervical carcinoma cell … - Full text - MIT Libraries
WS Ahn, MJ Seo, SM Bae, JM Lee, SE Namkoong, CK … - International Journal of Gynecological Cancer, 2005 - blackwell-synergy.com
... In contrast, the rest of clones and transcripts within two-fold change were ... as being
differentially up- or down-regulated transcripts such as XBP1, CENPF, RPS25 ...
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Wider connections for El Nino - Full text - MIT Libraries
WJ Randel - Mol. Cell. Biol, 1988 - nature.com
... Conversely, they no longer expressed Blimp-1 or XBP1 (a key regulator of the ... This
minor population of cells may be more proliferative than the rest,and there ...
Web Search - acd.ucar.edu - nature.com

A decade of differential display
P Liang - Biotechniques, 2002 - forest.mtu.edu
... budding yeast, CLN1, was the primary target of Xbp1 (50). ... While Drosophi- la exhibits
a circadian rest-active cycle, it is unclear whether fly rest constitutes ...
Cited by 33 - View as HTML - Web Search - forestry.mtu.edu - biotechniques.com - ncbi.nlm.nih.gov - all 6 versions » - Get it from MIT Libraries

Cancer: Negative feedback for B cells - Full text - MIT Libraries
LM Staudt - Nature, 2004 - nature.com
... Conversely, they no longer expressed Blimp-1 or XBP1 (a key regulator of the ... This
minor population of cells may be more proliferative than the rest, and there ...
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Recovery of the Yeast Cell Cycle from Heat Shock-induced G
PC Clb - jbc.org
... A stress-inducible protein, Xbp1, has been proposed to function in the repression
of ... 4. Overexpression of CLN and CLB5 eliminates heat-induced G 1 ar- rest. ...
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Misfolding of Collagen X Chains Harboring Schmid Metaphyseal Chondrodysplasia Mutations Results in … - Full text - MIT Libraries
R Wilson, S Freddi, D Chan, KSE Cheah, JF Bateman - Journal of Biological Chemistry - jbc.org
... Reverse Transcription (RT)-PCR and Primer Extension Analysis of Spliced XBP1
Transcripts—Transfected and untransfected cells were grown to confluence in 6 ...
Cited by 1 - Web Search - jbc.org - ncbi.nlm.nih.gov

Predicting Genetic Regulatory Response Using Classification
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0411028, 2004 - arxiv.org
... We shall refer to F(x) as the prediction score in the rest of the paper. ... Other top
ranking regulators (see Table IV B) include PPT1, TPK1 (SRA3), XBP1 and GCN20 ...
Cited by 10 - View as HTML - Web Search - cs.princeton.edu - math.biu.ac.il - cs.utsa.edu - all 14 versions »

Negative feedback for B cells
LM Staudt - nature.com
... Conversely, they no longer expressed Blimp-1 or XBP1 (a key regulator of the ... This
minor population of cells may be more proliferative than the rest,and there ...
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BIOINFORMATICS - Full text - MIT Libraries
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - BIOINFORMATICS, 2004 - bioinformatics.oupjournals.org
... functions. In Figure 1, we describe Adaboost in these terms. We shall refer
to F(x) as the prediction score in the rest of the paper. The ...
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Regulation Of Major Histocompatibility Complex Class-Ii Genes: X, Y And Other Letters Of The … - Full text - MIT Libraries
C Benoist, D Mathis - Annual Review of Immunology, 1990 - immunol.annualreviews.org
Page 1. Annu. Rev. lmmunol. 1990. 8:681-715 Copyright © 1990 by Annual Reviews Inc.
All rights reserved REGULATION OF MAJOR HISTOCOMPATIBILITY COMPLEX ...
Cited by 165 - Web Search - immunol.annualreviews.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Identification of new genes differentially expressed in coronary artery disease by expression … - Full text - MIT Libraries
SR Archacki, G Angheloiu, XL Tian, FL Tan, N … - Physiol Genomics, 2003 - intl-physiolgenomics.physiology.org
... This group include genes encoding interferon stimulatory factor-3 , XBP1 (TREB5),
B144 NK ... CAD, only one gene, GST, was downregulated, whereas the rest of genes ...
Cited by 11 - Web Search - physiolgenomics.physiology.org - physiolgenomics.physiology.org - ncbi.nlm.nih.gov

Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana
S Kamauchi, H Nakatani, C Nakano, R Urade - blackwell-synergy.com
... Therefore, we searched for P-UPRE, the XBP1 binding sequence, ERSE, AARE, or ... However,
of the rest, the 50 genes that showed no up-regulated signal for the ...
Web Search - content.febsjournal.org

Transcription analysis of S. cerevisiae in VHG fermentation
R Devantier, S Pedersen, L Olsson - dx.doi.org
... Within each cluster and among the rest of genes not assigned to a cluster ... involved
in general stress response (ALD3, GRE1, MRK1, RIM11, UBC5, XBP1), five genes ...
Web Search - liebertonline.com - liebertonline.com

metabolism of Saccharomyces cerevisiae - Full text - MIT Libraries
N Eckert-Boulet, B Regenberg, J Nielsen - Curr Genet, 2005 - springerlink.com
Page 1. RESEARCH ARTICLE Nadine Eckert-Boulet Æ Birgitte Regenberg Æ Jens Nielsen
Grr1p is required for transcriptional induction of amino acid permease ...
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Graphical model-based gene clustering and metagene expression analysis
A Dobra, Q Wang, M West - 2004 - isds.duke.edu
... The genes that are still in L when the procedure stops are taken to be
clusters of size 1 and appended to the rest of the groups. ...
Cited by 1 - View as HTML - Web Search - stat.duke.edu - stat.duke.edu - isds.duke.edu - all 5 versions »

Bayesian Covariance Selection
A Dobra, M West - 2004 - isds.duke.edu
... Although finding initial regressions can be done independently for each variable,
the rest of the procedure is inherently sequential as the main loop that ...
Cited by 1 - View as HTML - Web Search - uam.es - isds.duke.edu - stat.duke.edu - all 5 versions »

Jet broadening in deeply inelastic scattering
X Guo - Physical Review D - link.aps.org
... 34! In the rest of this section, we derive the leading contribution to D^lT2& by
using the same technique used to ... 2!. However, when xB!0.1, y2 ;1/(xBp1) is no ...
Cited by 31 - Web Search - arxiv.org - adsabs.harvard.edu - adsabs.harvard.edu - Get it from MIT Libraries

Genome-wide analysis of the yeast transcriptome upon heat and cold shock
M Becerra, LJ Lombardia, MI Gonzalez-Siso, E … - Comparative and Functional Genomics, 2003 - doi.wiley.com
... medium (standard deviation separation criteria) or low (the rest) statistical
significance. ... The expression of XBP1 is nearly undetectable under normal growth ...
Web Search - ingentaconnect.com - dkfz.de - dkfz-heidelberg.de

Activation mechanisms of the HACI-mediated unfolded protein response in filamentous fungi - Full text - MIT Libraries
M Saloheimo, M Valkonen, M Penttila - Molecular Microbiology, 2003 - blackwell-synergy.com
... binding domain, there are three areas which are better conserved than the rest of
the ... The animal xbp1 intron borders have three of these nucleotides conserved. ...
Cited by 14 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov

Hyperhomocysteinemia, endoplasmic reticulum stress, and alcoholic liver injury - Full text - MIT Libraries
C Ji, N Kaplowitz - World J. Gastroenterol, 2004 - wjgnet.com
Page 1. PO Box 2345, Beijing 100023, China World J Gastroenterol 2004;10(12):1699-
1708 Fax: +86-10-85381893 World Journal of Gastroenterology ...
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On the evolutionary advantage of fitness-associated recombination - Full text - MIT Libraries
L Hadany, T Beker - Genetics, 2003 - genetics.org
... In this model, a proportion of the FAR population, composed of the best individuals,
would have the lower recombination rate, and the rest would have the ...
Cited by 5 - Web Search - charles.stanford.edu - genetics.org - ncbi.nlm.nih.gov - all 5 versions »

Modular nature of Blimp-1 in the regulation of gene expression during B cell maturation - Full text - MIT Libraries
R Sciammas, MM Davis - J. Immunol, 2004 - jimmunol.org
... Blimp-1 in M12 cells, suggesting a parallel pathway with Xbp1 and the ... semiautonomously
in separate pathways, such as the transcription factor Rest/Nrsf, which ...
Cited by 6 - Web Search - jimmunol.org - jimmunol.org - ncbi.nlm.nih.gov - all 5 versions »

BMC Genomics - Full text - MIT Libraries
MC Abba, Y Hu, H Sun, JA Drake, S Gaddis, K … - BMC Genomics, 2005 - biomedcentral.com
... mapped within a 10 kb region 5' of the TSS, while the rest mapped to 3 ... osis viral
oncogene homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17 ...
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Gene expression signature of estrogen receptor α status in breast cancer - Full text - MIT Libraries
M Abba, Y Hu, H Sun, J Drake, S Gaddis, K Baggerly … - BMC Genomics, 2005 - biomedcentral.com
... within a 10 kb region 5' of the TSS, while the rest mapped to 3 ... myeloblastosis viral
oncogene homolog (C-MYB) , X-box-binding protein 1 (XBP1), hydroxysteroid 17 ...
Cached - Web Search - dx.doi.org - pubmedcentral.nih.gov - citebase.eprints.org - all 7 versions »

Insights Into Host Responses Against Pathogens from Transcriptional Profiling - Full text - MIT Libraries
RG Jenner, RA Young - Nature Reviews Microbiology, 2005 - nature.com
... STAT4,STAT5A,and their co-activator NMI), cAMP-response-element binders (ATF3, ATF4,
BATF and CREM), as well as BCL6, CEBPG, EGR4, HIF1α,NFATC1, SMAD7 and XBP1 ...
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Dean’s Lecture - Full text - MIT Libraries
LM Hendershot - The Mount Sinai Journal OF Medicine, 2004 - mssm.edu
... be seen attached to the ER membrane, where they begin translocating the N- terminal
end of the polypeptide chain, well before translation of the rest of the ...
Cited by 1 - View as HTML - Web Search

Comparative analysis of global gene expression in lager and laboratory yeast strains grown in wort - Full text - MIT Libraries
TC James, SG Campbell, UM Bond - Proceedings of the IEEE, 2002 - ieeexplore.ieee.org
... Among the rest, BTN2 is a gene known to modulate the pH of the cells and is highly
induced in S150 at day eight of brewing while reduced in 6701. ...
Cited by 1 - Web Search - ieeexplore.ieee.org - tcd.ie

Subspace Selection for Clustering High-Dimensional Data
C Baumgartner, C Plant, K Kailing, HP Kriegel, P … - Proceedings of the Fourth IEEE International Conference on …, 2004 - doi.ieeecomputersociety.org
... scale all k-nn-distances in a sub- space S into the range [0, 1]. Thus, we assume
that nn-Dist S k (o) ∈ [0, 1] for all o ∈ DB throughout the rest of the ...
Cited by 2 - Web Search - dbs.informatik.uni-muenchen.de - dbs.ifi.lmu.de - portal.acm.org - all 5 versions »

Endoplasmic reticulum signaling as a determinant of recombinant protein expression - Full text - MIT Libraries
RE Cudna, AJ Dickson - Biotechnology and Bioengineering, 2003 - doi.wiley.com
... has a major role to play in the transmission of signals to the rest of the ... is then
followed by IRE1-dependent excision of a small intron from the XBP1 mRNA (Fig ...
Cited by 15 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

2. The Endoplasmic Reticulum: A Central Player in Cell Signalling and Protein Synthesis.
HL Roderick, MJ Berridge, MD Bootman - springerlink.com
... Ca 2+ reaching up to 1 mM in concentration is present at rest within this
organelle (Meldolesi and Pozzan, 1998). Following stimulation ...
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Kaon scattering from C and Ca at 800 MeV/c - Full text - MIT Libraries
D Marlow, PD Barnes, NJ Colella, SA Dytman, RA … - Physical Review C, 1982 - link.aps.org
... are their laboratory momenta, and Ei is the energy of the muon in the kaon rest
frame ... 26) was used to search for the minimum of the function X2= Yj(xi)-F(xbP1,P2 ...
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Evidence for Selective Transformation of Autoreactive Immature Plasma Cells in Mice Deficient in … - Full text - MIT Libraries
JQ Zhang, C Okumura, T McCarty, MS Shin, P … - The Journal of Experimental Medicine - jem.org
... As shown in Table III, two tumors had GL V L sequences and the rest had 1 ... Relative
to BALB/c splenic B cells, the levels of Sdc1 (CD138), Xbp1, and Prdm1 (Blimp ...
Cited by 1 - Web Search - dx.doi.org - jem.org - ncbi.nlm.nih.gov

Genomic analysis of the unfolded protein response in Arabidopsis shows its connection to important … - Full text - MIT Libraries
IM Martinez, MJ Chrispeels - Plant Cell, 2003 - plantcell.org
... 2). The overlap list increased from 21 to 53 genes; 7 of the additional 32 genes
are marked as overlap/low stringency (OL-LS) in Table 2, and the rest (25) are ...
Cited by 23 - Web Search - pubmedcentral.nih.gov - www-biology.ucsd.edu - biologie.uni-rostock.de - all 7 versions »

Analysis of the Major Patterns of B Cell Gene Expression Changes in Response to Short-Term … - Full text - MIT Libraries
X Zhu, R Hart, MS Chang, JW Kim, SY Lee, YA Cao, D … - The Journal of Immunology, 2004 - jimmunol.org
... Ninety-six percent of the probes came from the Riken Fantom collection
(http://fantom.gsc.riken.jp; Yokohama, Kanagawa, Japan), with the rest from collections ...
Web Search - jimmunol.org - ijmm.org - ncbi.nlm.nih.gov - all 6 versions »

The Journal of Immunology 2004
R Costs - its.caltech.edu
... Ninety-six percent of the probes came from the Riken Fantom collection, with the
rest from collections of the National Institute on Aging, Research Genetics ...
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Search Article Keyword：
SO Lim, SG Park, JH Yoo, G Jung, YM Park, HJ Kim, … - wjgnet.com
... above. The rest of the experimental procedure was the same except that
the membrane was washed for 2 h with PBS/0.13% Tween 20. ...
Cached - Web Search - wjgnet.com - wjgnet.com - wjgnet.com

Expression of heat shock proteins (HSP27, HSP60, HSP70, HSP90, GRP78, GRP94) in hepatitis B virus- … - Full text - MIT Libraries
SO Lim, SG Park, JH Yoo, YM Park, HJ Kim, KT Jang, … - World J Gastroenterol, 2005 - wjgnet.com
... above. The rest of the experimental procedure was the same except that
the membrane was washed for 2 h with PBS/0.13% Tween 20. ...
View as HTML - Web Search - wjgnet.com - mgl.snu.ac.kr - ncbi.nlm.nih.gov - all 6 versions »

2004
A Report, U Guide - Occupational Health & Safety - sanraffaele.org
... We synthesized a peptide (T-pep- tide) that corresponds to the acidic tail in
HMGB1 and studied its interactions with the rest of the protein. ...
Cited by 4 - View as HTML - Web Search - ing.pl - inglife.co.kr - jaarverslag.info - all 430 versions » - Get it from MIT Libraries

Abstracts for the XIIth World Congress of Psychiatric Genetics
B Hotel, I Dublin - doi.wiley.com
... samples. Recent reports arising from positional and candidate studies implicate
several genes, including BDNF, G72/G30, XBP1 and GRK3. ...
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An EM Algorithm for Joint Feature Selection and Classifier Design
B Krishnapuram, L Carin, A Hartemink - ee.duke.edu
... In Sec- tion II, we formalize the basic problems of pattern recognition and feature
selection, introduce the notation used in the rest of the paper, and ...
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TOR Regulates the Subcellular Localization of Ime1, a Transcriptional Activator of Meiotic … - Full text - MIT Libraries
N Colomina, Y Liu, M Aldea, E Gari - Mol Cell Biol, 2003 - mcb.asm.org
... was treated with rapamycin (200 ng/ml [rap]), and the rest remained without ... CLN1
and its repression by Xbp1 are important for efficient sporulation in budding ...
Cited by 3 - Web Search - pubmedcentral.nih.gov - dx.doi.org - ncbi.nlm.nih.gov - all 6 versions »

Global Expression Profiling of Fibroblast Responses to Transforming Growth Factor-
P Switching - J Pathol, 2003 - ajp.amjpathol.org
... This is also the first report to suggest that TGF- 1 up-regulates TCF8 and XBP1,
associated with regulating the expression of genes involved in immune and ...
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Chromosome-Wide Mapping of Estrogen Receptor Binding Reveals Long-Range Regulation Requiring the … - Full text - MIT Libraries
AS Brodsky, W Li, J Eeckhoute, W Shao, EA Fox, PA … - Cell, 2005 - research.dfci.harvard.edu
Page 1. Cell, Vol. 122, 33–43, July 12, 2005, Copyright ©2005 by Elsevier Inc. DOI
10.1016/j.cell.2005.05.008 Chromosome-Wide Mapping of Estrogen Receptor ...
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3 The yeast response to heat shock
A Trott, KA Morano - springerlink.com
Page 1. 3 The yeast response to heat shock Amy Trott and Kevin A. Morano
Department of Microbiology and Molecular Genetics, University ...
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Three Genes, Two Species: A Comparative Analysis of Upstream Regulatory Sequences Sufficient to …
M Kirouac, PW Sternberg - etd.caltech.edu
... level, while the rest of these elements appear at the 85% level. ... two species, while
the rest of these elements share 85% homology. All three of the ...
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JCB Article - Full text - MIT Libraries
F Urano, M Calfon, T Yoneda, C Yun, M Kiraly, SG … - The Journal of Cell Biology, 2002 - mcbi-34.med.nyu.edu
Page 1. The Rockefeller University Press, 0021-9525/2002/08/639/8 $5.00
The Journal of Cell Biology, Volume 158, Number 4, August ...
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Gcn4p and Novel Upstream Activating Sequences Regulate Targets of the Unfolded Protein Response - Full text - MIT Libraries
C Patil, H Li, P Walter - PLoS Biol, 2004 - dx.doi.org
... we would expect of regulatory sequences, ie, high frequency in UPR target promoters,
and enrichment in the target promoters relative to the rest of the ...
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Dynamic workflows and advanced data management for problem solving environments
D Moisa, N Ramakrishnan, CJ Ribbens, S Varadarajan … - 2004 - scholar.lib.vt.edu
Page 1. Dynamic Workflows and Advanced Data Management for Problem Solving
Environments Dan Moisa Department of Computer Science ...
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