Diazaborine resistance in yeast involves the efflux pumps Ycf 1 p and Flr 1 p and is enhanced by a … - Full text - MIT Libraries
H Jungwirth, F Wendler, B Platzer, H Bergler, G … - European Journal of Biochemistry, 2000 - content.febsjournal.org
... analysis of the rest of the plasmids with EcoRI/SalI and BamHI/ApaI demonstrated
that all of these contained fragments with the common YAP1-DNA sequence. ...
Cited by 14 - Cached - Web Search - ejbiochem.org - blackwell-synergy.com - ingentaconnect.com - all 7 versions »

Early Expression of Yeast Genes Affected by Chemical Stress {dagger}
A Lucau-Danila, G Lelandais, Z Kozovska, V Tanty, … - mcb.asm.org
... Only the strains in which yap1 and pdr1 were deleted are considered in the rest
of this work; deletions of the other genes did not lead to significant ...
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Regulation of the fission yeast transcription factor Pap1 by oxidative stress: requirement for the … - Full text - MIT Libraries
WM Toone, S Kuge, M Samuels, BA Morgan, T Toda, N … - Genes Dev, 1998 - genesdev.org
... at position +119 was ligated to a restriction fragment containing the rest of the ...
HA-pap1 + fragment was inserted into the pRS cp-GFP-HA-YAP1 plasmid (Kuge et ...
Cited by 100 - Web Search - genesdev.org - pubmedcentral.nih.gov - ncbi.nlm.nih.gov - all 6 versions »

Correlating gene promoters and expression in gene disruption experiments - Full text - MIT Libraries
K Palin, E Ukkonen, A Brazma, J Vilo - Bioinformatics, 2002 - bioinformatics.oupjournals.org
... Of these binding site motifs, 37 are previously known and the rest are putative
sites generated ... Also yap1 disruption correlates best with its known binding site ...
Cited by 5 - Web Search - egeen.ee - ingentaconnect.com - ncbi.nlm.nih.gov - all 7 versions »

The mitochondrial cytochrome c peroxidase Ccp1 of Saccharomyces cerevisiae is involved in conveying … - Full text - MIT Libraries
C Charizanis, H Juhnke, B Krems, KD Entian - Mol. Gen. Genet, 1999 - springerlink.com
... Recently, we demonstrated that Yap1-dependent reporter gene expression is abolished
in pos9 ... and 200 or 400 lM hydrogen peroxide was added to the rest of the ...
Cited by 19 - Web Search - springerlink.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

BIOINFORMATICS
K Palin, E Ukkonen, A Brazma, J Vilo - BIOINFORMATICS, 2002 - bioinformatics.oupjournals.org
... Of these binding site motifs, 37 are previously known and the rest are putative
sites ... mbp1 yap1 yaf1 swi5 gcn4 arg5,6 dig1, dig2 isw1, isw2 AUR1 CDC42 CMD1 ...
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Inducers of Plant Systemic Acquired Resistance Regulate NPR 1 Function through Redox Changes - Full text - MIT Libraries
Z Mou, W Fan, X Dong - Cell, 2003 - classes.plantpath.wsu.edu
... C155Y) or a serine (C223S), the rest of the cysteines were ... yAP1, which is responsible
for expression of genes for defense against oxidative stress, is also ...
Cited by 59 - View as HTML - Web Search - botany.ubc.ca - bio.pku.edu.cn - all 10 versions »

Proteomics of Breast Cancer for Signal Pathway Profiling and Therapeutic Target Discovery - Full text - MIT Libraries
H Hondermarck, I El Yazidi-Belkoura, F Vandermoere … - Oncogene - mcponline.org
... 3). To date, most of the studies about DRMs concern the plasma membrane with
demonstrated roles in partitioning specific proteins from the rest of the resident ...
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An XML Plagiarism Detection Model for Procedural Programming Languages
SY Noh, SK Gadia - 2003 - it.iitb.ac.in
... The organization of the rest of this paper is as follows: in Section 2, we ... three
systems, YAP1, YAP2, and YAP3, is same, and details of steps in the phase are ...
View as HTML - Web Search - archives.cs.iastate.edu - archives.cs.iastate.edu

Verifying LOC based functional and performance constraints
X Chen, H Hsieh, F Balarin, Y Watanabe - Proceedings of International Workshop on High Level Design …, 2003 - ieeexplore.ieee.org
... our LOC- based quantitative constraint verification. The rest of the paper
is organized as follows. In the next section, we review ...
Cited by 5 - Web Search - cs.ucr.edu - cs.ucr.edu - ieeexplore.ieee.org

Fischer-Vize, Science 270, 1828 (1995). 35. TC James and SC Elgin, Mol. Cell Biol. 6, 3862 (1986); R … - Full text - MIT Libraries
J EMBO, J Bacteriol… - Proc. Natl. Acad. Sci. USA, 1996 - sciencemag.org
... to identify genes whose expression was affected by deletion of the transcriptional
co-repressor TUP1 or overexpression of the transcrip- tional activator YAP1. ...
Web Search - bioweb2.biology.uiowa.edu - gcat.davidson.edu - stat.ucdavis.edu - all 49 versions »

Differential Roles of Tau Class Glutathione S-Transferases in Oxidative Stress - Full text - MIT Libraries
KG Kilili, N Atanassova, A Vardanyan, N Clatot, K … - J Biol Chem, 2004 - jbc.org
... 3). However, expression of BI-GST in YAP1 cells restored GSH to 70% of normal levels ...
The rest of the substrates examined are related to the role of GSTs in the ...
Cited by 5 - Web Search - jbc.org - ncbi.nlm.nih.gov

Comparative analysis of orthologous eukaryotic mRNAs: potential hidden functional signals - Full text - MIT Libraries
SA Shabalina, AY Ogurtsov, IB Rogozin, EV Koonin, … - Nucleic Acids Research, 2004 - nar.oupjournals.org
... differences in GC content between the 30 nt low conservation window and the rest
of 3 ... in the 5'-UTRs of certain yeast genes, such as GCN4 and YAP1/2, provides ...
Cited by 7 - Web Search - pubmedcentral.nih.gov - citebase.eprints.org - ingentaconnect.com - all 8 versions »

Functional isolation of the Candida albicans FCR3 gene encoding a bZip transcription factor … - Full text - MIT Libraries
E Inc, B Liege - Yeast, 2001 - doi.wiley.com
... belongs to a subfamily of bZip proteins comprising eight members (YAP1–8) (Fernandes
et al ... and Yap4p/Yap6p branching and approximately 78% for the rest of the ...
Cited by 5 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov

Predicting Genetic Regulatory Response Using Classification
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0411028, 2004 - arxiv.org
... refer to F(x) as the prediction score in the rest of the ... REB1 (Pol- I transcription
termination activity), GAL4 (galactose metabolism), YAP1 (peroxide stress ...
Cited by 10 - View as HTML - Web Search - cs.princeton.edu - math.biu.ac.il - cs.utsa.edu - all 14 versions »

A Runtime Mechanism for Detection of Artificial Deadlocks in Process Networks
I INTRODUCTION - ieeexplore.ieee.org
... processes can make progress; if some processes can- not progress and the rest of
the ... “YAP1: Application Modeling tot Signal Process- ing Systems”.ln 37th. ...
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THIOL-BASED REGULATORY SWITCHES - Full text - MIT Libraries
MSB Paget, MJ Buttner - Annual Review of Genetics, 2003 - phyto.annualreviews.org
... systems containing metals (RsrA, PerR, and Hsp33), and a thiol-based relay switch
(Yap1). ... suggest that CrtJ is not in redox equilibrium with the rest of the ...
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Superoxide is a mediator of an altruistic aging program in Saccharomyces cerevisiae - Full text - MIT Libraries
P Fabrizio, L Battistella, R Vardavas, C Gattazzo, … - J. Cell Biol, 2004 - jcb.org
... after day 13, suggesting that the stress resistance genes activated by Yap1/Skn7
are ... in natural environments are likely to be separated from the rest of the ...
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BIOINFORMATICS - Full text - MIT Libraries
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - BIOINFORMATICS, 2004 - bioinformatics.oupjournals.org
... functions. In Figure 1, we describe Adaboost in these terms. We shall refer
to F(x) as the prediction score in the rest of the paper. The ...
Web Search

Negative information for motif discovery
KT Takusagawa, D Gifford - Master’s project, Massachusetts Institute of Technology, …, 2003 - psrg.lcs.mit.edu
... RAP1 RMACCCANNCAYY REB1 CGGGTRR STE12 TGAAACA SWI4 CACGAAA SWI6 CACGAAA YAP1 TTACTAA ...
10 • Number of candidate motifs for scanning the rest sequences: 20 ...
Cited by 3 - View as HTML - Web Search - helix-web.stanford.edu - www-smi.stanford.edu - ncbi.nlm.nih.gov - all 5 versions » - Get it from MIT Libraries

Modeling the Combinatorial Functions of Multiple Transcription Factors
CH Yeang, T Jaakkola - springerlink.com
... 10]. This approach, though more reliable, is also expensive and time-consuming.
The rest of the paper is organized as follows. We ...
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Oxidative stress promotes specific protein damage in Saccharomyces cerevisiae - Full text - MIT Libraries
E Cabiscol, E Piulats, P Echave, E Herrero, J Ros - J Biol Chem, 2000 - jbc.org
... cerevisiae, this adaptive response involves several transcription factors (Yap1,
Yap2, Ace1, Mac1 ... The rest of the immunodetected proteins were the same as those ...
Cited by 61 - Web Search - jbc.org - ncbi.nlm.nih.gov

GEPIS--quantitative gene expression profiling in normal and cancer tissues - Full text - MIT Libraries
Y Zhang, DA Eberhard, GD Frantz, P Dowd, TD Wu, Y … - Bioinformatics, 2004 - bioinformatics.oupjournals.org
... tumor tissue to increase the reliability of our results. Finally, the DEUs
in the rest of the ... rest of the MMP family members. DISCUSSION ...
Cited by 2 - Web Search - share.gene.com - ingentaconnect.com - ncbi.nlm.nih.gov - all 9 versions »

Genome-wide analysis of the yeast transcriptome upon heat and cold shock
M Becerra, LJ Lombardia, MI Gonzalez-Siso, E … - Comparative and Functional Genomics, 2003 - doi.wiley.com
... medium (standard deviation separation criteria) or low (the rest) statistical
significance ... genes related to specific transcrip- tional regulation, YAP1 is also ...
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Mini Forum Review
WS MOYE-ROWLEY - ANTIOXIDANTS & REDOX SIGNALING, 2002 - dx.doi.org
... to many different stress treatments, and these factors act to ar- rest growth as ...
Genetic analysis of the peroxide tolerance phenotypes of yap1 and skn7 mutant ...
Cited by 2 - Web Search - liebertonline.com - liebertonline.com

A novel NADPH: diamide oxidoreductase activity in Arabidopsis thaliana P1 {zeta}-crystallin - Full text - MIT Libraries
EJ Biochem - Eur. J. Biochem, 2000 - ejbiochem.org
... The P1 gene confers tolerance to diamide in yap1 yeast [9], which is ... QH · produced
reduced ferricytochrome c directly (reaction 1 ), and the rest reduced O 2 ...
Cited by 12 - Web Search - content.febsjournal.org - ejbiochem.org - ncbi.nlm.nih.gov - all 5 versions »

Debttmcnt of Zoology, Colunrbiu Unizwsity, New York City 3
CS PITTENDRIGH - EVOLUTION, 1950 - wrbu.si.edu
Page 1. COLIN S. PITTENDRIGH Debttmcnt of Zoology, Colunrbiu Unizwsity,
New York City 3 . . Received November 25, 1949 INTRODUCTION ...
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Meeting Highlights: International Summer School,‘From Genome to Life’
J Wixon, M Editor - Comparative and Functional Genomics, 2002 - doi.wiley.com
... YAP1 has been implicated in the response to oxidative stress and the HAP complex
and HAP1 have been implicated in regulating the fermentation-respiration shift ...
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MISAE: A New Approach for Regulatory Motif Extraction
Z Sun, J Yang, JS Deogun - Proceedings of CSB2004, 2004 - ieeexplore.ieee.org
... on the same set. The rest of this paper is organized as follows: Section
2 describes the method used in MISAE. Section 3 presents ...
Cited by 1 - Web Search - doi.ieeecomputersociety.org - conferences.computer.org - portal.acm.org

Genetic and Biochemical Interactions Among Yar1, Ltv1 and RpS3 Define Novel Links Between … - Full text - MIT Libraries
JW Loar, RM Seiser, AE Sundberg, HJ Sagerson, N … - Genetics, 2004 - genetics.org
... genomic "environmental stress response" are transiently repressed; the rest are
transiently ... diamide, at least as sensitive as cells lacking YAP1, the major ...
Web Search - lclark.edu - genetics.org - ncbi.nlm.nih.gov

Absolute transcript levels of thioredoxin-and glutathione-dependent redox systems in Saccharomyces … - Full text - MIT Libraries
F MONJE-CASAS, C MICHAN, C PUEYO - Biochem. J, 2004 - biochemj.org
... Oppositely, the less abundant transcript was GPX1 during all the exponential growth
and GPX2 along the rest of the monitored ... In notable contrast, the rest of ...
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A developmentally regulated basic-leucine zipper-like gene and its expression in embryonic retina …
SHUZ WANG, R ADLER - Neurobiology, 1994 - pnas.org
Page 1. Proc. Nati. Acad. Sci. USA Vol. 91, pp. 1351-1355, February 1994 Neurobiology
A developmentally regulated basic-leucine zipper-like gene and its ...
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Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation - Full text - MIT Libraries
FD Gibbons, FP Roth - METHODS, 2002 - genome.org
... cycle) collection of non-ratio-based data from 52 experiments covering YAP1/2 knockouts ...
assignment to clusters of uniform size (as used in the rest of this ...
Cited by 38 - Web Search - llama.med.harvard.edu - math.biu.ac.il - dx.doi.org - all 8 versions »

Damage recovery pathways in Saccharomyces cerevisiae revealed by genomic phenotyping and interactome … - Full text - MIT Libraries
TJ Begley, AS Rosenbach, T Ideker, LD Samson - Mol. Cancer Res, 2002 - mcr.aacrjournals.org
... In [iii] and the rest of the figure, green nodes represent proteins ... Hfi1, and Ycl010c),
via two proteins involved in transcriptional regulation (Yap1 and Med2 ...
Cited by 29 - Web Search - bioinformatics.med.umich.edu - netra.wustl.edu - csb.yale.edu - all 7 versions »

Drug-Induced Regulation of the MDR1 Promoter in Candida albicans - Full text - MIT Libraries
JB Harry, BG Oliver, JL Song, PM Silver, JT Little … - Antimicrob Agents Chemother, 2005 - aac.asm.org
... A YAP1-related gene, CAP1, that mediates the oxidative stress response in C. albicans
has ... both directions (YME-F and YME-R; M = mutant), while the rest of the ...
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Oxygen Club OF California
C Santa Barbara - oxyclubcalifornia.org
Page 1. O XYGEN C LUB OF C ALIFORNIA 2004 O XIDANTS AND A NTIOXIDANTS IN B IOLOGY
C O -S PONSORED BY THE L INUS P AULING I NSTITUTE B OOK OF A BSTRACTS ...
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Genetic linkage analysis of the lesser grain borer Rhyzopertha dominica identifies two loci that … - Full text - MIT Libraries
DI Schlipalius, Q Cheng, PE Reilly, PJ Collins, PR … - Genetics, 2002 - genetics.org
... The lines are highly heterogeneous throughout the rest of the genome ( SCHLIPALIUS ...
demonstrated that mutations in the transcription factor genes Yap1 and Skn7 ...
Cited by 4 - Web Search - entm.purdue.edu - genetics.org - ncbi.nlm.nih.gov

resistance in Candida albicans
RA AKINS - Medical Mycology, 2005 - taylorandfrancis.metapress.com
... AMB. Only one of these is wall-associated, one may be a stress-response
sensor, and the rest have no associated functions to date. ...
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Whole-Genome Discovery of Transcription Factor Binding Sites by Network-Level Conservation - Full text - MIT Libraries
M Pritsker, YC Liu, MA Beer, S Tavazoie - Genome Research, 2003 - genome.org
... the exception of the binding sites for CAD1, MCM1, MIG1, SUM1, YAP1, and ZAP1 ... distance
from S. cerevisiae, with S. bayanus performing far better than the rest. ...
Cited by 12 - Web Search - bioinformatics.cs.vt.edu - statgen.ncsu.edu - mcb.mcgill.ca - all 14 versions »

Discriminative Learning of Composite Transcriptional Regulatory Modules
T Naveh - cs.huji.ac.il
... same amount of time. The rest of this chapter describes the algorithm in
detail. 3.2 Discriminative Learning One drawback of motif ...
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Transcription analysis of S. cerevisiae in VHG fermentation
R Devantier, S Pedersen, L Olsson - dx.doi.org
... Within each cluster and among the rest of genes not assigned to a cluster, genes
belonging to the SGD Gene Ontology process terms “Response to stress ...
Web Search - liebertonline.com - liebertonline.com

On Electrical Circuits atid Switching Circuits*.
IV APPENDIX, V APPENDIX - ieeexplore.ieee.org
... Deleting y:, the rest is a cut set of G* separating (I*, 2*>. Conversely, if (yi,,.
yi., . * . ... Consider L1 yoF = yap1 + yyop, + . . + yap,. (25) ...
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Report Comparative Genomics, Evolution and Origins of the Nuclear Envelope
NP Complex - Cell Cycle, 2004 - landesbioscience.com
... In the rest of the eukaryotes, a relatively small number of Nups are ubiquitous,
with the highly reduced genome of the microsporidian parasite Encephalitozoon ...
Web Search - landesbioscience.com

Error characteristics and calibration-free techniques for wireless LAN-based location estimation
Y Gwon, R Jain - Proceedings of the second international workshop on Mobility …, 2004 - portal.acm.org
... measurement and calibration. Rest of the paper is organized as follows. Section
2 provides background of the work. Section 3 presents ...
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Diazaborine Treatment of Yeast Cells Inhibits Maturation of the 60S Ribosomal Subunit - Full text - MIT Libraries
B Pertschy, G Zisser, H Schein, R Koeffel, G Rauch … - Mol Cell Biol, 2004 - pubmedcentral.nih.gov
... In contrast to resistance mediated by YAP1, PDR1, and PDR3, where cross-resistance
to ... The rest of the cells showed punctate structures similar to those of the ...
Web Search - mcb.asm.org - ncbi.nlm.nih.gov

Hic-5 Communicates between Focal Adhesions and the Nucleus through Oxidant-Sensitive Nuclear Export … - Full text - MIT Libraries
M Shibanuma, J Kim-Kaneyama, K Ishino, N Sakamoto, … - Mol. Biol. Cell, 2003 - molbiolcell.org
... of Hic-5 was localized in the nucleus by H 2 O 2 with the rest remaining at the ... the
cysteine residues in the NES module of Hic-5 and the NESs of Yap1 and Pap1. ...
Cited by 9 - Web Search - pubmedcentral.nih.gov - dx.doi.org - all 10 versions »

Pkc 1 and the Upstream Elements of the Cell Integrity Pathway in Saccharomyces cerevisiae, Rom 2 and … - Full text - MIT Libraries
F Vilella, E Herrero, J Torres, MA de la Torre- … - J Biol Chem, 2005 - jbc.org
... the induction of specific genes in response to oxidative stress in yeast. These
are Yap1, ... genes regulated by Msn2/4, Yap1 or Skn7 (not shown). ...
Cited by 1 - Web Search - jbc.org - ncbi.nlm.nih.gov

The Pbs 2 MAP kinase kinase is essential for the oxidative-stress response in the fungal pathogen … - Full text - MIT Libraries
DM Arana, C Nombela, R Alonso-Monge, J Pla - Microbiology, 2005 - mic.sgmjournals.org
... The oxidative-stress responses appear to be regulated, at least in part, at the
transcription level, with Yap1 and Skn7 being two important oxidative-stress ...
Cited by 1 - Web Search - mic.sgmjournals.org - ncbi.nlm.nih.gov

The transcriptional response to alkaline pH in Saccharomyces cerevisiae: evidence for calcium- … - Full text - MIT Libraries
R Serrano, A Ruiz, D Bernal, JR Chambers, J Arino - Molecular Microbiology, 2002 - blackwell-synergy.com
... which drives the import of many nutrients and cations (van der Rest et al., 1995 ...
was even stronger in this mutant), nor did the absence of Yap1, a transcription ...
Cited by 19 - Web Search - ingentaconnect.com - ncbi.nlm.nih.gov

From a dry bone to a genetic portrait: A case study of sickle cell anemia
M Faerman, A Nebel, D Filon, MG Thomas, N Bradman, … - AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY, 2000 - doi.wiley.com
... (YAP) was analyzed with primers YAP1 and YAP2, yielding ... 3 Results for the largest
microsatellite tested are presented here; for the rest, see Table 3. 157 ...
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