Application of Ingenuity Pathways Analysis to Identify Putative Biomarkers of Childhood Leukemia …
IA Spectrum - Cancer - ingenuity.com
... CD19,CD2, CD28 CHD4,Histone H3,Histone H4, MADH1, MADH4,MEIS1, MLL,PBX1,
SIN3A, SMARCA2, SPP1,TAF6,TBP CDKN1A,E2F1, HOXA10, HOXA11 ...
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Synteny of orthologous genes conserved in mammals, snake, fly, nematode, and fission yeast - Full text - MIT Libraries
Z Trachtulec, J Forejt - Mammalian Genome, 2001 - springerlink.com
... MHC on HOSA 6 (NOTCH4-PBX2), but also on HOSA 1 (NOTCH2-PBX1) and HOSA ... 0.0015 for
the three neighboring human and mouse genes (coding for PSMB1, TBP, and PDCD2 ...
Cited by 16 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Rapid Generation of de novo Biological Pathways from Large-Scale Gene Expression Data Using the …
DC Siu - ingenuity.com
... E2F1, HOXA10, CDKN1A PBX1, SPP1, MEIS1, MADH1, MADH4, MLL, CHD4, SMARCA2,
TAF6, SIN3A, TBP, Histone H3, Histone H4 TR ALPHA, HOXB7 ...
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Fli-1 b is generated by usage of differential splicing and alternative promoter - Full text - MIT Libraries
PDK Dhulipala, L Lee, VN Rao, ESP Reddy - Oncogene, 1998 - nature.com
... Several transcription factor binding sequences like ATF/CREB, E2A-PBX1, EBP,
PEA-3, ETS-2, Sp-1, c-Myc, TBP, GATA-1 and Oct-3 were conserved in the promoter ...
Cited by 10 - Web Search - nature.com - ncbi.nlm.nih.gov

Nonmuscle Myosin Promotes Cytoplasmic Localization of PBX - Full text - MIT Libraries
H Huang, M Paliouras, I Rambaldi, P Lasko, M … - Mol Cell Biol, 2003 - mcb.asm.org
... In contrast, GAL-fNM did not affect the nuclear localization of TBP (data not shown),
indicating that this cytoplasmic retention effect is specific to PBX1. ...
Cited by 3 - Web Search - pubmedcentral.nih.gov - mcb.asm.org - ncbi.nlm.nih.gov - all 5 versions »

Using the Human Genome - Full text - MIT Libraries
JA Boyle - Biochemistry and Molecular Biology Education, 2002 - intl.bambed.org
... HAT, histone acetyltransferase; TBP, TATA-binding protein; TAF, TBP-associated factor ...
ML Cleary, C. Wolberger (1999) Structure of a HoxB1-Pbx1 heterodimer bound ...
Web Search - intl.bambed.org

A conserved motif present in a class of helix-loop-helix proteins activates transcription by direct … - Full text - MIT Libraries
ME Massari, PA Grant, MG Pray-Grant, SL Berger, JL … - Mol. Cell, 1999 - www-biology.ucsd.edu
... tors identified were those associated with the TBP-con- taining complex, TFIID,
which are known as TBP-associ- ated factors or TAFs (Dynlacht et al., 1991). ...
Cited by 53 - View as HTML - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

MyoD Targets Chromatin Remodeling Complexes to the Myogenin Locus Prior to Forming a Stable DNA- …
L Ivana, Y Ohkawa, CA Berkes, DA Bergstrom, CS … - mcb.asm.org
... We observed that the homeodomain factor Pbx1, which cooperates with MyoD to stimulate ...
SNF enzymes have been shown to facilitate the binding of TBP and other ...
Web Search - mcb.asm.org

Biochemical diversity of peptide-hormone-dependent regulation of steroidogenic P450s
N Kagawa, LJ Bischof, PY Cheng, A Anwar, MR … - Drug Metab. Rev, 1999 - taylorandfrancis.metapress.com
... Pbx1 ... The basal transcription machinery in steroidogenic CYPs is anchored by
TATA-binding protein (TBP) which binds to the TATA sequence located near the site ...
Cited by 4 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov - Get it from MIT Libraries

[PS] CITATIONS FOR PROTEIN/DNA (REGULATORY) - Full text - MIT Libraries
PDA White, X Ding, JC Vanderspek, JR Murphy, D … - J. Biol. Chem, 2004 - aist.go.jp
... PB.Sigler The structural basis for the oriented assembly of a TBP/TFB/promoter ...
C.-P.Chang, ML.Cleary, C.Wolberger Structure of a Hoxb1-Pbx1 Heterodimer Bound ...
Cited by 10 - View as HTML - Web Search - ndbserver.rutgers.edu - ndbserver.rutgers.edu

Imatinib mesylate in Philadelphia chromosome-positive leukemia of childhood
EA Kolb, Q Pan, M Ladanyi, PG Steinherz - Cancer, 2003 - doi.wiley.com
... the sensitiv- ities were calculated according to the copy number of TBP after being ...
Expression of BCR- ABL, E2A-PBX1, and MLL-AF4 fusion transcripts in newly ...
Cited by 2 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov - Get it from MIT Libraries

Transcriptional repression by Msx-1 does not require homeodomain DNA-binding sites - Full text - MIT Libraries
KM Catron, H Zhang, SC Marshall, JA Inostroza, JM … - Mol. Cell. Biol, 1995 - mcb.asm.org
... show that Msx-1 represses transcription in vitro in a purified reconstituted assay
system and interacts with protein complexes composed of TBP and TFIIA (DA ...
Cited by 66 - Web Search - mcb.asm.org - pubmedcentral.nih.gov - ncbi.nlm.nih.gov

The Nuclear Import of TAF10 Is Regulated by One of Its Three Histone Fold Domain-Containing …
E Soutoglou, MA Demeny, E Scheer, G Fienga, P … - mcb.asm.org
... and probed with anti-TAF10, anti-TAF8, or anti-TBP antibody (left panels ... 4). In
particular, the nuclear localization of the extradenticle and PBX1 proteins is ...
Cited by 1 - Web Search - pubmedcentral.nih.gov - mcb.asm.org - ncbi.nlm.nih.gov - Get it from MIT Libraries

Hemoglobin switching: new insights.
KR Peterson - Current Opinion in Hematology, 2003 - co-hematology.com
... Oct1 bind specifically to sequences within 5'HS3.2. However, Pbx1 does not ... it
significantly reduced the recruitment of TATA box binding protein (TBP) in adult ...
Cited by 2 - Web Search - co-hematology.com - ncbi.nlm.nih.gov - Get it from MIT Libraries

Gtx, an oligodendrocyte-specific homeodomain protein, has repressor activity - Full text - MIT Libraries
R Awatramani, J Beesley, H Yang, H Jiang, F Cambi, … - Journal of Neuroscience Research, 2000 - doi.wiley.com
Page 1. Gtx, an Oligodendrocyte-Specific Homeodomain Protein, Has Repressor
Activity Raj Awatramani, 1 Jacqueline Beesley, 2 Huibin ...
Cited by 7 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

SUPPLEMENTARY DATA FOR CLASSIFICATION, SUBTYPE DISCOVERY, AND PREDICTION OF OUTCOME IN PEDIATRIC …
I Section, E Methods, II Section, P Dataset - stjuderesearch.org
... The average percent present calls for our overall dataset was 29.7%, and for each
of the genetic subgroups was BCR-ABL (31.1%), E2A-PBX1 (28.9%), Hyper >50 (31 ...
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The proto-oncogene HLF and the related basic leucine zipper protein TEF display highly similar DNA- … - Full text - MIT Libraries
SP Hunger, S Li, MZ Fall, L Naumovski, ML Cleary - Blood, 1996 - bloodjournal.org
... Based on these structural features, it has been predicted that E2A-PBX1 and
E2A-HLF contribute to leukemogenesis by aberrantly activating transcription of ...
Cited by 16 - Web Search - bloodjournal.org - bloodjournal.org - ncbi.nlm.nih.gov - all 5 versions »

Silencing Mediator for Retinoid and Thyroid Hormone Receptors Interacts with Octamer Transcription … - Full text - MIT Libraries
T Kakizawa, T Miyamoto, K Ichikawa, T Takeda, S … - Journal of Biological Chemistry, 2001 - jbc.org
... to interact with the POU domains of Oct-1 such as TBP, TFIIB, HMG2 ... demonstrated that
several homeodomain proteins such as Pit-1 and Pbx1 functionally interact ...
Cited by 5 - Web Search - jbc.org - ncbi.nlm.nih.gov

Translocations, fusion genes, and acute leukemia - Full text - MIT Libraries
V Saha, BD Young, PS Freemont - Journal of Cellular Biochemistry, 1998 - doi.wiley.com
... PBX1 1q23 HD Unknown ALL ... CEBP), the retinoblastoma gene product (pRb) and members
of the basal transcription complex such as the TATA binding protein (TBP). ...
Cited by 16 - Web Search - doi.wiley.com - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Regulation of insulin-like growth factor binding protein-1 promoter activity by FKHR and HOXA10 in … - Full text - MIT Libraries
JJ Kim, HS Taylor, GE Akbas, I Foucher, A … - Biol Reprod, 2003 - biolreprod.org
... TBP, TATA binding protein. ... The pentapeptide motif of Hox proteins is required for
cooperative DNA binding with Pbx1, physically contacts Pbx1, and enhances DNA ...
Cited by 12 - Web Search - bioone.org - biolreprod.org - ncbi.nlm.nih.gov - all 6 versions »

Wnt/Wingless Signaling Requires BCL9/Legless-Mediated Recruitment of Pygopus to the Nuclear-Catenin- … - Full text - MIT Libraries
T Kramps, O Peter, E Brunner, D Nellen, B Froesch, … - Cell, 2002 - biology.ccsu.edu
... Introduction protein (TBP; Hecht et al., 1999), as well as with TIP49 (Bauer
et al., 1998), a protein that interacts with TBP. Wnt ...
Cited by 58 - View as HTML - Web Search - frontiers-in-genetics.org - ncbi.nlm.nih.gov - all 4 versions »

Ectopic expression of the beta-cell specific transcription factor Pdx 1 inhibits glucagon gene … - Full text - MIT Libraries
B Ritz-Laser, BR Gauthier, A Estreicher, A Mamin, … - Diabetologia, 2003 - springerlink.com
... Pdx1 could thus im- pair Pax-6 interactions with TBP or alternatively, act by ... In
acinar cells, Pdx1 associates with Pbx1 and Meis2 on the B element of the ...
Cited by 1 - Web Search - medecine.unige.ch - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

STRUCTURE FUNCTION STUDIES OF AKR, A HOMEODOMAIN REPRESSOR OF APOVLDLII GENE EXPRESSION
ML Tejada - geocities.com
... element and is therefore designated the TATA-binding protein or TBP. ... designated either
as the TBP-associated factors (TAFs) or non-TAF coactivators [1]. The ...
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Chapter 2.8 Modulation of Soluble Receptor Signaling by Coregulators
M KUMAR, GH PERDEW - cas.psu.edu
... 6 factors such as TATA binding factor (TBP) and transcription factor IIB, which
suggests a ... repressed signaling through the Pbx1/HOXB1 and AP-1 proteins 72 . ...
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Specific homeodomain-DNA interactions are required for HOX11-mediated transformation - Full text - MIT Libraries
BM Owens, YX Zhu, TC Suen, PX Wang, JF Greenblatt, … - Blood, 2003 - bloodjournal.org
Page 1. Specific homeodomain-DNA interactions are required for HOX11-mediated
transformation Bronwyn M. Owens, 1,3 † Yuan-Xiao ...
Cited by 2 - Web Search - bloodjournal.org - ncbi.nlm.nih.gov

Transcription factors, normal myeloid development, and leukemia - Full text - MIT Libraries
DG Tenen, R Hromas, JD Licht, DE Zhang - Blood, 1997 - bloodjournal.org
... Because PU.1 can bind to the TATA binding protein (TBP) in vitro, 57 one mechanism
by which PU.1 could activate a whole class of myeloid promoters is by ...
Cited by 353 - Web Search - bloodjournal.org - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

The Evolution of Transcriptional Regulation in Eukaryotes - Full text - MIT Libraries
GA Wray, MW Hahn, E Abouheif, JP Balhoff, M Pizer, … - Molecular Biology and Evolution, 2003 - mbe.oupjournals.org
... These include the RNA polymerase II holoenzyme complex ( 15 proteins); TATA-binding
protein (TBP; 1 protein); TAFs (TBP-associated factors, also known as ...
Cited by 73 - Web Search - ndsu.nodak.edu - ww2.mcgill.ca - biology.duke.edu - all 14 versions »

Birth of the Major Histocompatibility Complex - Full text - MIT Libraries
OFCI ORIGIN, II CLASS - Scandinavian Journal of Immunology, 1998 - blackwell-synergy.com
... are also represented by genes on chromosome 1 (RXRG, COL11A1, PBX1 and TNR ... NOTCH)
and six additional genes: TATA box-binding protein (TBP), proteasome subunit ...
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Birth of the Major Histocompatibility Complex - Full text - MIT Libraries
AMOF DEFINITION - Scand. J. Immunol, 1998 - ingentaconnect.com
... are also represented by genes on chromosome 1 (RXRG, COL11A1, PBX1 and TNR ... NOTCH)
and six additional genes: TATA box-binding protein (TBP), proteasome subunit ...
Web Search

Molecular and biochemical analysis of the MODY syndromes - Full text - MIT Libraries
WE Winter - Pediatric Diabetes, 2000 - dx.doi.org
... Once TBP (TATA-box binding protein) binds to the TATA box, TAF [TAT-box binding
protein-associated (transcription) factors] and RNA polymerase II bind. ...
Cited by 5 - Web Search - ncbi.nlm.nih.gov - ncbi.nlm.nih.gov

Anterior–posterior patterning in the Drosophila embryo
A Nasiadka, BH Dietrich, HM Krause - Advances in Developmental Biology and Biochemistry - utoronto.ca
... Interestingly, some gen- eral transcription factors such as TBP and RNA polymerase
subunit IIc have been reported to be predominantly cytoplasmic prior to ...
Cited by 2 - View as HTML - Web Search

Separate domains in E 1 and E 2 proteins serve architectural and productive roles for cooperative … - Full text - MIT Libraries
E Gillitzer, G Chen, A Stenlund - The EMBO Journal, 2000 - embojournal.npgjournals.com
... constraints on bending, possibly requiring substantial structural alterations in
the DNA as has been observed for binding of proteins such as TBP, LEF and IHF ...
Cited by 21 - Web Search - emboj.org - pubmedcentral.nih.gov - ncbi.nlm.nih.gov - all 6 versions »

Large-scale characterization of genes specific to the larval nervous system in the ascidianCiona … - Full text - MIT Libraries
Y Mochizuki, Y Satou, N Satoh - genesis, 2003 - doi.wiley.com
... c 04172 AK114433 synapsin 2169 519 Synapsin_C B G — — — d 04232 AK112142
TFIID 1202 316 TBP B — — — — c 04736 AK114292 ...
Cited by 5 - Web Search - ncbi.nlm.nih.gov

Calcium Regulation and Functions of Basic Helix-Loop-Helix Transcription Factors
J Saarikettu - diva-portal.org
... light chain kinase NFAT Nuclear factor of activated T-cells PLC Phospholipase C
RTK Receptor tyrosine kinase SEF2-1 SL3-3 enhancer factor 2-1 TBP TATA binding ...
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Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment … - Full text - MIT Libraries
O Elemento, S Tavazoie - Genome Biology, 2005 - dx.doi.org
... expression of several cell proliferation-related genes in D. melanogaster [51] and,
more recently, the genes encoding the TATA-binding protein (TBP) [52] and ...
Cited by 1 - Web Search - pubmedcentral.nih.gov - bmc.ub.uni-potsdam.de - genomebiology.com - all 8 versions »

Use of Heterologous cDNA Array Screening to Analyze Bovine Oocyte Transcriptome and its Evolution …
R DALBIES-TRAN, P MERMILLOD - biolreprod.org
Page 1. Use of Heterologous cDNA Array Screening to Analyze Bovine Oocyte
Transcriptome and its Evolution During In Vitro Maturation ...
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HOXA genes are included in genetic and biologic networks defining human acute T-cell leukemia (T-ALL … - Full text - MIT Libraries
J Soulier, E Clappier, JM Cayuela, A Regnault, M … - Blood, 2005 - bloodjournal.org
... Results were expressed in Ct of the amplification curve and normalized on the
basis of the expression of 2 housekeeping genes, ABL1 and TBP. ...
Web Search - bloodjournal.org - ncbi.nlm.nih.gov

TRANSCRIPTIONAL REGULATION OF THE 17ALPHA-HYDROXYLASE GENE IN NORMAL AND POLYCYSTIC OVARY SYNDROME …
JK Wickenheisser - etda.libraries.psu.edu
Page 1. The Pennsylvania State University The Graduate School College of Medicine
TRANSCRIPTIONAL REGULATION OF THE 17ALPHA- HYDROXYLASE ...
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cis-Regulatory control of three cell fate-specific genes in vulval organogenesis of C. elegans and C … - Full text - MIT Libraries
M Kirouac, PW Sternberg - Dev Biol, 2003 - etd.caltech.edu
Page 1. cis-Regulatory Control of Three Cell Fate-Specific Genes in Vulval
Organogenesis of C. elegans and C. briggsae Thesis by Martha Kirouac ...
Cited by 16 - View as HTML - Web Search - etd.caltech.edu - ncbi.nlm.nih.gov