Predicting Genetic Regulatory Response Using Classification
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - Arxiv preprint q-bio.QM/0411028, 2004 - arxiv.org
... motifs include HSF1 (heat-shock), RAP1 (heat- shock and osmolarity), TBP (TATA binding ...
regulators (see Table IV B) include PPT1, TPK1 (SRA3), XBP1 and GCN20. ...
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Bovine protamine genes contain a single intron - Full text - MIT Libraries
SA Krawetz, W Connor, GH Dixon - J. Biol. Chem, 1988 - jbc.org
... c- TBP 1.3 P ... 4. It is evident that they overlap, as EcoRI segments I1 and I11 are
common to both. Segment I is unique to XBP1.3, while IV and V are ...
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Microarray analysis of gene expression in human donor sclera - Full text - MIT Libraries
TL Young, GS Scavello, PC Paluru, JD Choi, EF … - Mol Vis, 2004 - molvis.org
... DEK 6p23 NM_021145 cyclin D binding myb-like DMTF1 7q21 transcription factor 1
NM_001938 down-regulator of transcription DR1 1p22.1 1, TBP-binding (negative ...
Cited by 3 - View as HTML - Web Search - molvis.org - scavello.net - ncbi.nlm.nih.gov

S-114.500 Basics for Biosystems if the Cell: Independent Components In Discrete Biosequences
H Juntunen - lce.hut.fi
... Ty917 CGTCTATGATGAC 5 Ty2-917 ACCTGCGT 6 GCN4 HIS4 TGACTA 7 XBP1 CYS1 TCCTCGAGGATT
8 ... 17 STE12 STE2 ATGAAACA 18 GCN4 HIS3 ATGACTCAT SKO1 19 TBP CYC1 TTATACATT 7 ...
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BIOINFORMATICS - Full text - MIT Libraries
M Middendorf, A Kundaje, C Wiggins, Y Freund, C … - BIOINFORMATICS, 2004 - bioinformatics.oupjournals.org
Page 1. VOLUME 20 SUPPLEMENT 1 4 AUGUST 2004 PAGES i232–i240 BIOINFORMATICS
Electronic edition http://bioinformatics.oupjournals.org ...
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Engineering Mammalian Cell Factories for Improved Recombinant Monoclonal Antibody Production: … - Full text - MIT Libraries
DM Dinnis, DC James - Biotechnol Bioeng, 2005 - doi.wiley.com
... activity and splices a 26-nucleotide segment from the XBP1 mRNA, which ... Transgenes
encompassing dual-promoter CpG islands from the human TBP and HNRPA2B1 loci ...
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Comparison of gene expression changes induced in mouse and human cells treated with direct-acting … - Full text - MIT Libraries
M Islaih, B Li, IA Kadura, JL Reid-Hubbard, JT … - Environmental and Molecular Mutagenesis, 2004 - doi.wiley.com
... Nfe212 Transcription regulation 4.9 4.7 94821_at X-box binding protein 1 Xbp1
Transcription regulation 4.4 3.0 96192_at Transacting transcription factor 3 ...
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Molecular Identification of ERa-Positive Breast Cancer Cells by the Expression Profile of an … - Full text - MIT Libraries
A WEISZ, W BASILE, C SCAFOGLIO, L ALTUCCI, F … - JOURNAL OF CELLULAR PHYSIOLOGY, 2004 - doi.wiley.com
... TAF9 Hs.60679 TAF9 RNA polymerase II, TATA box binding protein (TBP)-associated
factor ... Table 1: ASAH, CEACAM5, ERBB2, LIV-1, MGP, SCNN1A, TFF3, XBP1) and eight ...
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Discovery of novel transcription factor binding sites by statistical overrepresentation - Full text - MIT Libraries
S Sinha, M Tompa - Nucleic Acids Research, 2002 - nar.oupjournals.org
... successes, we are left with only five regulons (GCR1, ROX1, SFF, TBP and UASPHR ...
Mai,B. and Breeden,L. (1997) Xbp1, a stress-induced transcriptional repressor of ...
Cited by 46 - Web Search - dragon.bio.purdue.edu - cs.huji.ac.il - bioinformatics.cs.vt.edu - all 10 versions »

SUPPLEMENTARY DATA FOR CLASSIFICATION, SUBTYPE DISCOVERY, AND PREDICTION OF OUTCOME IN PEDIATRIC …
I Section, E Methods, II Section, P Dataset - stjuderesearch.org
Page 1. SUPPLEMENTARY DATA FOR CLASSIFICATION, SUBTYPE DISCOVERY, AND PREDICTION
OF OUTCOME IN PEDIATRIC ACUTE LYMPHOBLASTIC LEUKEMIA ...
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Autoinhibitory Domains: Modular Effectors - Full text - MIT Libraries
MA Pufall, BJ Graves - Annu. Rev. Cell Dev. Biol, 2002 - cellbio.annualreviews.org
... RNA-activating SNAPc p190 subunit/ 1999) complex association with Oct-1 TBP,
TATA-binding DNA binding, N-terminal region/SNAPc (Kuddus & ...
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Mining for Putative Regulatory Elements in the Yeast Genome Using Gene Expression Data
J Vilo, A Brazma, I Jonassen, AJ Robinson, E … - ISMB, 2000 - egeen.ee
Page 1. ISMB-2000, August 2000, pages 384–394 1 Mining for putative regulatory
elements in the yeast genome using gene expression data ...
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Annual Review of Cell and Developmental Biology - Full text - MIT Libraries
MA Pufall, BJ Graves - Annual Review of Cell and Developmental Biology, 2002 - cellbio.annualreviews.org
Annual Reviews tagline graphic, ...
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Evaluating Machine Learning Algorithms Used to Infer Gene Regulatory Network Structure
D Handley - andrew.cmu.edu
... binding protein (TBP). There are also up to twelve TBP-associated transcription
factors (TAF) that may be specific for the particular gene being transcribed. ...
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Dynamic workflows and advanced data management for problem solving environments
D Moisa, N Ramakrishnan, CJ Ribbens, S Varadarajan … - 2004 - scholar.lib.vt.edu
Page 1. Dynamic Workflows and Advanced Data Management for Problem Solving
Environments Dan Moisa Department of Computer Science ...
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