Search for occurrences of one of the top modules in all Drosophila genes
Occurrences of one of the top modules {233,264,268} in all genes in the Drosophila melanogaster genome
Column 1: CG gene index from Flybase
Column 2: internal index
Columns 3-5: position of each of the motifs (bp from the 3' end of the first intron)
Column 6: gene number
Column 7: gene symbol from Flybase
Column 8: gene name from Flybase
Column 9: comments
Genes highlighted in yellow were present in our original set of 13 genes used to search for cis elements (see Table 2 in main text)
CG index pos1    [1] pos2    [2] pos3    [3] id symb name comment
3352 496 9177 9148 9270 1 ft fat ommatidi polarity    
11326 822 63 42 126 2 tsp Thrombospondin  
11326 822 63 42 236 2 tsp    
6320 1450 9019 8886 8897 3 ca-b Ca2+protein, sub F  
16874 1451 3933 3800 3811 4 vm32e  Vitelline membrane 32E  
4788 1452 5267 5400 5389 5 none    
14944 1496 5466 5319 5371 6 none    
14944 1496 5466 5319 5410 6 none    
10659 2262 3817 3752 3643 7 none    
13968 2263 4399 4464 4573 8 sNPF short neuropeptide F precursor  
1772 3000 4442 4371 4432 9 dap dacapo  
2346 3033 574 715 693 10 fmrf FMRFamide-related  
12140 3034 2829 2970 2948 11 none    
1429 3035 231 275 267 12 mef2 Myocyte enhancing factor 2 TF activity, mesoderm development
12904 3091 4240 4200 4391 13 none    
7779 3862 2322 2515 2384 14 cng Cyclic-nucleotide-gated ion channel protein  
7779 3862 2322 2515 2423 14 cng    
13578 5004 1669 1794 1841 15 none    
3340 5129 1937 1757 1872 16 Kr krueppel  [4]
3340 5129 1937 1757 1884 16 Kr    
32239 5718 1958 1762 1887 17 Gef64C Guanine nucleotide exchange factor GEF64C  
32239 5718 1958 1762 1939 17 Gef64C    
32239 5718 1958 1813 1887 17 Gef64C    
32239 5718 1958 1813 1939 17 Gef64C    
15876 5719 2198 2343 2217 18 none    
15876 5719 2198 2343 2269 18 none    
15876 5719 2198 2394 2217 18 none    
15876 5719 2198 2394 2269 18 none    
13713 5720 1530 1334 1459 19 none    
13713 5720 1530 1334 1511 19 none    
13713 5720 1530 1385 1459 19 none    
13713 5720 1530 1385 1511 19 none    
6494 6165 6033 5991 6117 20 h hairy  [5]
6494 6165 6033 6013 6117 20 h    
6494 6165 6033 6059 6117 20 h    
6577 6363 2513 2492 2595 21 can cannonball transcription factor, pol II
14157 6364 4194 4215 4112 22 or67d    
4717 7500 2325 2194 2276 23 kni knirps  [6]
4717 7500 2325 2194 2341 23 kni    
4717 7500 2325 2194 2371 23 kni    
11000 7957 2452 2373 2569 24 none    
11000 7957 2452 2481 2569 24 none    
1108 8149 7647 7487 7620 25 a-est6 a-esterase-6  
1279 8150 4415 4255 4388 26 rtnl2    
9786 8287 7085 7120 7070 27 hb hunchback  [7]
8112 8288 3160 3125 3175 28 none    
8116 8290 3017 3061 3103 29 none    
11760 8291 5925 5969 6011 30 none    
12420 8506 468 592 448 31 none    
12816 8508 2525 2649 2505 32 none    
13841 9998 4282 4126 4268 33 none    
17380 10067 2564 2754 2699 34 none    
10002 10735 4725 4554 4667 35 fkh forkhead transcription regulator activity, pol ii
12069 11010 1640 1532 1522 36 none    
12069 11010 1676 1532 1522 36 none    
1378 11023 2846 2988 2938 37 tll tailless transcription factor
1378 11023 2846 2988 2960 37 tll    
1378 11023 2846 3040 2938 37 tll    
1378 11023 2846 3040 2960 37 tll    
7952 11514 2335 2286 2205 38 gt giant  [8]
7952 11514 2335 2350 2205 38 gt    
14426 11961 2911 3078 2963 39 nullo nullo  
14426 11961 2911 3078 3012 39 nullo    
14426 11961 2911 3078 3048 39 nullo    
12638 12318 1525 1633 1640 40 spri sprint ras interactor activity
12714 12576 1714 1675 1720 41 none    
1764 12597 5466 5384 5407 42 none    
15745 12599 5521 5603 5580 43 none    
9114 12785 3461 3338 3282 44 none    
6170 12786 41 164 220 45 HDAC6 histone deacetylase activity  
12529 13316 1589 1416 1449 46 Zw Zwischenferment  
1849 13407 4500 4360 4442 47 run runt dna binding    [9]
17495 13521 213 177 252 48      
CG index pos1 pos2 pos3 id symb name comment
[1]
position of motif 1
[2]
position of motif 2
[3]
position of motif 3
[4]
gene in the original set
[5]
gene in the original set
[6]
gene in the original set
[7]
gene in the original set
[8]
gene in the original set
[9]
gene in the original set