Location of motif pairs/triplets/quadruplets in each transcript within the cluster set

t=transcript number

p=position of last motif with respect to ATG for each motif

affy=affymetrix probe id

nm=refseq accession number

ug=unigene accession number

chr=chromosome

pos=chromosomal position

strand=strand

Drosophila Mellanogaster

1 motifs = 214 215 0 0 thresholds = 9.417 ||10.281 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-1908	-1813	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttgccgccc	10.46	-1	ctaattaccccgggaaa	13.46	-1
4	-2534	-2616	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttgggccgcac	9.83	-1	tttcccggggctacttg	12.31	1
7	-1976	-1926	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttgggcggccc	9.79	-1	cccataaccccggggca	11.49	-1
8	-923	-862	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttgcggctc	10.49	-1	tggcccgagagaaagag	10.90	1

2 motifs = 173 215 0 0 thresholds = 8.143 ||10.281 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	457	519	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgtcccgaggcagcgg	10.83	1	tgactcgggaaaaatcg	10.28	1
4	-258	-348	NM_078946	ll.36039	eve	NaN	NaN	NaN	cttccgccggcggacac	8.84	-1	cggcccgggaaaatgcg	11.39	1
6	-2527	-2567	NM_078700	ll.33059	run	NaN	NaN	NaN	gaggtccttcgcagcga	8.40	1	tatcccggggctatatg	11.53	1
7	-1891	-1926	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagtacctgggcagcag	9.32	1	cccataaccccggggca	11.49	-1
7	-1960	-1926	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cacctgccacgggccca	9.41	-1	cccataaccccggggca	11.49	-1

3 motifs = 93 268 0 0 thresholds = 10.453 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1656	1708	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttgtcggcaa	10.76	-1	ttttatgc	6.31	-1
2	-2063	-2148	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttaggcca	11.20	-1	ttttatgg	6.31	-1
3	-1140	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttttatggcaa	11.20	-1	ttttatgt	6.34	-1
7	-570	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttttcggcca	11.15	-1	ttttatga	6.70	-1
7	-3091	-3174	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttatgggcaa	11.70	-1	ttttatgg	6.31	-1
7	-4065	-4041	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttatgtgcaa	11.19	-1	ttttatgt	6.34	-1
8	-3305	-3206	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttgtttgcca	10.55	-1	ttttatgt	6.34	-1
8	-3305	-3257	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttgtttgcca	10.55	-1	ttttatga	6.70	-1
11	-2568	-2659	NM_164546	ll.33583	odd	NaN	NaN	NaN	tttttatggcca	10.89	-1	ttttatgg	6.31	-1
12	4430	4406	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttataggcaa	11.60	-1	ttttatga	6.70	-1
12	-1712	-1627	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttgtcggcca	10.45	-1	ttttatga	6.70	-1
13	-919	-824	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttgcccataaaa	11.70	1	ccataaaa	6.31	1

4 motifs = 64 215 0 0 thresholds = 7.766 ||10.281 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	452	519	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttccttatttt	9.87	-1	tgactcgggaaaaatcg	10.28	1
2	-1847	-1813	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctcattttttc	8.06	-1	ctaattaccccgggaaa	13.46	-1
2	-2360	-2383	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttgtcattttt	8.75	-1	tttcccgggaaaatttg	13.52	1
4	-340	-348	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctttcgcattttc	10.14	-1	cggcccgggaaaatgcg	11.39	1
5	-439	-408	NM_079253	ll.38995	h	NaN	NaN	NaN	ttcttcctttttg	7.93	-1	cccattcccgcgagcca	10.49	-1
7	-1994	-1926	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	cccataaccccggggca	11.49	-1
8	-852	-862	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctctctctttc	8.92	-1	tggcccgagagaaagag	10.90	1

5 motifs = 14 35 212 0 thresholds = 6.618 ||10.187 ||8.953 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-411	-439	-396	NM_169233	ll.41032	hb	NaN	NaN	NaN	agagccaaaaaggc	6.66	-1	ttttttggca	10.66	-1	caaaatgcagcgccagaaaatgcaaa	10.71	1
2	542	552	456	NM_079463	ll.40287	kni	NaN	NaN	NaN	gtttttatggccga	6.86	1	ttttatggcc	11.48	-1	atttccatcttttccttatttttttg	9.75	-1
4	-630	-620	-560	NM_078946	ll.36039	eve	NaN	NaN	NaN	tgttttatggcaga	6.85	1	ttttatggca	11.06	-1	ttttcgccgttttattgccaattttt	12.42	-1
4	-1995	-1985	-2015	NM_078946	ll.36039	eve	NaN	NaN	NaN	cggtttatggccgc	8.57	1	gtttatggcc	10.61	-1	ttttttgttttggccgaccgattttt	10.45	-1
5	947	957	998	NM_079253	ll.38995	h	NaN	NaN	NaN	ccgtttttggccat	6.86	1	gtttttggcc	10.20	-1	aaaaactgacttcatgcgagtccaaa	9.58	1
8	-4479	-4489	-4563	NM_164966	ll.34569	salm	NaN	NaN	NaN	caagccataaaacg	6.93	-1	ttttatggct	10.80	-1	caaaaatgctcaacattaaaatcaaa	11.64	1
10	-2086	-2076	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	ggttttatggcctg	7.75	1	ttttatggcc	11.48	-1	tttttttttcgctgaatctggttttt	11.80	-1
13	-345	-335	-414	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tgttttatggctcc	7.34	1	ttttatggct	10.80	-1	aaaaaaaaagaagcaagagaaagaaa	13.47	1

6 motifs = 204 231 0 0 thresholds = 7.942 ||9.716 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3345	-3417	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttgcgacgtttttt	8.94	-1	cataaaaa	9.72	-1
1	-3576	-3633	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctctttttgttt	8.32	-1	cataaaaa	9.72	-1
2	669	743	NM_079463	ll.40287	kni	NaN	NaN	NaN	aataaaaaagaaaa	8.14	1	cataaaaa	9.72	-1
2	626	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	cataaaaa	9.72	-1
2	587	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	cataaaaa	9.72	-1
2	474	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttccttattttt	11.25	-1	cataaaaa	9.72	-1
2	454	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttccttattttt	11.25	-1	cataaaaa	9.72	-1
2	-1713	-1732	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttttttttttt	9.32	-1	cataaaaa	9.72	-1
3	-441	-531	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttctgattttttat	8.52	-1	cataaaaa	9.72	-1
3	-512	-446	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaacacaagcggaa	7.99	1	cataaaaa	9.72	-1
3	-512	-531	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaacacaagcggaa	7.99	1	cataaaaa	9.72	-1
4	-2447	-2391	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttgtggcctctttt	9.14	-1	cataaaaa	9.72	-1
5	-3666	-3734	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttgcattgtttt	8.67	-1	cataaaaa	9.72	-1
6	-2877	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	tttcccactttttt	8.72	-1	cataaaaa	9.72	-1
7	-1710	-1650	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttgaatttattt	8.32	-1	cataaaaa	9.72	-1
8	-3983	-4075	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttccccctttttt	9.14	-1	cataaaaa	9.72	-1
9	2280	2213	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttgtttttttta	9.12	-1	cataaaaa	9.72	-1
10	-2053	-1991	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttacgttttttt	8.72	-1	cataaaaa	9.72	-1
11	-2736	-2666	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttcgattttttt	10.64	-1	cataaaaa	9.72	-1
12	2538	2614	NM_057311	ll.34669	nub	NaN	NaN	NaN	tgttcctctttttt	8.05	-1	cataaaaa	9.72	-1
12	-1179	-1206	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaagaaattcagag	8.83	1	cataaaaa	9.72	-1
12	-2367	-2298	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttttccttttttt	9.04	-1	cataaaaa	9.72	-1

7 motifs = 264 270 270 0 thresholds = 7.927 ||7.035 ||7.035 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-3691	-3698	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacccgtt	8.11	1	caaccctttg	7.52	-1	taacccgttc	9.05	-1
1	-3691	-3725	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacccgtt	8.11	1	taacccgttc	9.05	-1	caaccctttg	7.52	-1
1	-3732	-3698	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	caaccctttg	7.52	-1	taacccgttc	9.05	-1
1	-3732	-3725	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	taacccgttc	9.05	-1	caaccctttg	7.52	-1
1	-3732	-3725	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	taacccgttc	9.05	-1	taaccctttc	9.65	-1
1	-3732	-3800	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	taaccctttc	9.65	-1	taacccgttc	9.05	-1
1	-3807	-3725	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taacccgttc	9.05	-1	taaccctttc	9.65	-1
1	-3807	-3800	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttc	9.65	-1	taacccgttc	9.05	-1
1	-3807	-3800	-3866	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttc	9.65	-1	taacccttta	8.57	-1
1	-3807	-3866	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taacccttta	8.57	-1	taaccctttc	9.65	-1
1	-3873	-3800	-3866	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttc	9.65	-1	taacccttta	8.57	-1
1	-3873	-3866	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaagggtt	9.05	-1	taacccttta	8.57	-1	taaccctttc	9.65	-1
2	-1171	-1178	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1171	-1248	-1178	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1307	-1248	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1307	-1248	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1307	-1314	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1307	-1314	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1307	-1314	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1307	-1344	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1307	-1344	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1307	-1344	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1307	-1364	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1307	-1364	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1337	-1248	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1337	-1248	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1337	-1314	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1337	-1314	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1337	-1314	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1337	-1344	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1337	-1344	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1337	-1344	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1337	-1364	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1337	-1364	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1371	-1314	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1371	-1314	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1371	-1344	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1371	-1344	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1371	-1364	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1371	-1364	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	caaccctttt	8.65	-1	taaccctttt	10.31	-1
5	-3859	-3852	-3935	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgggtt	8.11	-1	aaacccgttt	7.96	-1	taactctttt	8.30	-1
5	-3859	-3935	-3852	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgggtt	8.11	-1	taactctttt	8.30	-1	aaacccgttt	7.96	-1
5	-4578	-4571	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	aaagggtt	9.05	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4578	-4593	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	aaagggtt	9.05	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4600	-4571	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4600	-4593	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4646	-4571	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgggtt	8.11	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4646	-4593	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgggtt	8.11	-1	taatcctttc	8.21	-1	taatcctttc	8.21	-1
6	-941	-934	-951	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaaggctta	8.27	1	aaatcctttt	7.12	1
6	-941	-951	-934	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaggatt	8.87	-1	aaatcctttt	7.12	1	aaaaggctta	8.27	1
6	-2835	-2826	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaagggttg	8.65	1	tgatcctttt	7.26	1
6	-2835	-2842	-2826	NM_078700	ll.33059	run	NaN	NaN	NaN	aaagggtt	9.05	-1	tgatcctttt	7.26	1	aaaagggttg	8.65	1
10	-332	-252	-325	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaagggtt	9.05	-1	tcaccccttt	7.63	-1	aaaccctttc	7.90	-1
10	-332	-325	-252	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaccctttc	7.90	-1	tcaccccttt	7.63	-1
10	-2415	-2408	-2497	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaagggtt	9.05	-1	gaaccctttt	7.96	-1	tcaccctttt	8.92	-1
10	-2415	-2497	-2408	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaagggtt	9.05	-1	tcaccctttt	8.92	-1	gaaccctttt	7.96	-1
11	-867	-860	-951	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaccctttt	8.56	-1	caatcctttt	7.21	-1
11	-867	-951	-860	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaagggtt	9.05	-1	caatcctttt	7.21	-1	aaaccctttt	8.56	-1
11	-958	-860	-951	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaccctttt	8.56	-1	caatcctttt	7.21	-1
11	-958	-951	-860	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaaggatt	8.87	-1	caatcctttt	7.21	-1	aaaccctttt	8.56	-1
12	-1815	-1808	-1871	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaggatt	8.87	-1	aaatcctttt	7.12	-1	taacccattc	8.48	-1
12	-1815	-1871	-1808	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaggatt	8.87	-1	taacccattc	8.48	-1	aaatcctttt	7.12	-1

8 motifs = 89 212 256 0 thresholds = 9.266 ||8.953 ||6.882 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2621	2685	2589	NM_169233	ll.41032	hb	NaN	NaN	NaN	cacaattttt	9.66	-1	gaaaaactacgcaaatcaaagtgaaa	10.76	1	ggctaatt	9.00	-1
2	-3595	-3573	-3603	NM_079463	ll.40287	kni	NaN	NaN	NaN	aattattttt	9.80	-1	aaaaaataattttgataccctgcaaa	9.61	1	ggttagtt	6.88	-1
7	-1151	-1089	-1171	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aataattttt	11.04	-1	aaaaaatacaaaaataaatatagaaa	11.33	1	ggttaatt	8.22	-1
7	-1782	-1719	-1760	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaccattttt	9.59	-1	ttttaatttatttaaaaaccattttg	11.56	-1	ggttaatt	8.22	-1
8	-1694	-1725	-1760	NM_164966	ll.34569	salm	NaN	NaN	NaN	aataattttt	11.04	-1	caaaatgattcttaaacagaacaaaa	11.08	1	ggttaagt	7.41	-1
12	-1380	-1369	-1298	NM_057311	ll.34669	nub	NaN	NaN	NaN	aacaattttt	10.59	-1	tttttatgactttgtaacaatttttt	11.24	-1	ggctagtt	7.66	-1

9 motifs = 100 268 0 0 thresholds = 9.655 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3466	-3424	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgcacaaaaaacg	11.76	1	ttttatga	6.70	-1
2	665	736	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgcgaaaaaaatg	10.54	1	ttttatga	6.70	-1
2	665	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgcgaaaaaaatg	10.54	1	ttttatga	6.70	-1
3	-392	-411	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgaagataattcg	10.77	1	ttttatga	6.70	-1
3	-392	-439	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgaagataattcg	10.77	1	ttttatgt	6.34	-1
4	1163	1155	NM_078946	ll.36039	eve	NaN	NaN	NaN	gcgcaaataattcg	11.78	1	ttttatga	6.70	-1
7	-404	-344	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgcactcaaaatg	9.82	1	ttttatgc	6.31	-1
7	-585	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgcacaaaaggcg	11.06	1	ttttatga	6.70	-1
10	-2050	-1984	NM_080310	ll.31227	gt	NaN	NaN	NaN	cgtttttttttcgc	11.80	-1	ttttatgg	6.31	-1
10	-2050	-2078	NM_080310	ll.31227	gt	NaN	NaN	NaN	cgtttttttttcgc	11.80	-1	ttttatgg	6.31	-1

10 motifs = 270 270 0 0 thresholds = 7.035 ||7.035 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3698	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	caaccctttg	7.52	-1	taacccgttc	9.05	-1
1	-3725	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	taacccgttc	9.05	-1	caaccctttg	7.52	-1
1	-3725	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	taacccgttc	9.05	-1	taaccctttc	9.65	-1
1	-3800	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	taaccctttc	9.65	-1	taacccgttc	9.05	-1
1	-3800	-3866	NM_169233	ll.41032	hb	NaN	NaN	NaN	taaccctttc	9.65	-1	taacccttta	8.57	-1
1	-3866	-3800	NM_169233	ll.41032	hb	NaN	NaN	NaN	taacccttta	8.57	-1	taaccctttc	9.65	-1
2	-1178	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1248	-1178	NM_079463	ll.40287	kni	NaN	NaN	NaN	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1248	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1248	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	taactctttt	8.30	-1	taaccctttt	10.31	-1
2	-1314	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1314	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1314	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1344	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taactctttt	8.30	-1
2	-1344	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1344	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1364	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	caaccctttt	8.65	-1	taaccctttt	10.31	-1
2	-1364	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	caaccctttt	8.65	-1	taaccctttt	10.31	-1
5	-3852	-3935	NM_079253	ll.38995	h	NaN	NaN	NaN	aaacccgttt	7.96	-1	taactctttt	8.30	-1
5	-3935	-3852	NM_079253	ll.38995	h	NaN	NaN	NaN	taactctttt	8.30	-1	aaacccgttt	7.96	-1
5	-4571	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4593	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	taatcctttc	8.21	-1	taatcctttc	8.21	-1
6	-934	-951	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaaggctta	8.27	1	aaatcctttt	7.12	1
6	-951	-934	NM_078700	ll.33059	run	NaN	NaN	NaN	aaatcctttt	7.12	1	aaaaggctta	8.27	1
6	-2826	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaagggttg	8.65	1	tgatcctttt	7.26	1
6	-2842	-2826	NM_078700	ll.33059	run	NaN	NaN	NaN	tgatcctttt	7.26	1	aaaagggttg	8.65	1
10	-252	-325	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccccttt	7.63	-1	aaaccctttc	7.90	-1
10	-325	-252	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaccctttc	7.90	-1	tcaccccttt	7.63	-1
10	-2408	-2497	NM_080310	ll.31227	gt	NaN	NaN	NaN	gaaccctttt	7.96	-1	tcaccctttt	8.92	-1
10	-2497	-2408	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	gaaccctttt	7.96	-1
10	-2497	-2537	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	tcaccctttt	8.92	-1
10	-2537	-2497	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	tcaccctttt	8.92	-1
10	-2537	-2619	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	taacccatta	7.41	-1
10	-2619	-2537	NM_080310	ll.31227	gt	NaN	NaN	NaN	taacccatta	7.41	-1	tcaccctttt	8.92	-1
11	-860	-951	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaaccctttt	8.56	-1	caatcctttt	7.21	-1
11	-951	-860	NM_164546	ll.33583	odd	NaN	NaN	NaN	caatcctttt	7.21	-1	aaaccctttt	8.56	-1
12	-1808	-1871	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaatcctttt	7.12	-1	taacccattc	8.48	-1
12	-1871	-1808	NM_057311	ll.34669	nub	NaN	NaN	NaN	taacccattc	8.48	-1	aaatcctttt	7.12	-1
13	2418	2355	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	caacccattt	7.49	-1	caacccattt	7.49	-1
13	2355	2418	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	caacccattt	7.49	-1	caacccattt	7.49	-1

11 motifs = 147 186 207 0 thresholds = 9.707 ||8.684 ||7.225 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2192	2142	2215	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctgcatggtccccatgcccccac	11.47	-1	cctggctgcactcgtt	11.47	-1	ccccatgcccccacccc	10.85	-1
5	1293	1231	1275	NM_079253	ll.38995	h	NaN	NaN	NaN	ccccaacctacgccgcctcctcc	11.96	-1	aaatttggccgccagc	9.81	1	ccccaacctacgccgcc	10.98	-1
6	-706	-683	-662	NM_078700	ll.33059	run	NaN	NaN	NaN	ctacctgtaccacccgcccccgc	11.94	-1	caggagggccgccaaa	10.77	1	cgcgccgctggaagtgg	9.72	1
8	-1098	-1038	-1023	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagtgagtgagcgaaagagggcg	11.23	1	atggcaggctgccaag	9.87	1	tggcaggctgccaaggg	7.38	1

12 motifs = 204 233 268 0 thresholds = 7.942 ||7.728 ||6.314 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-3345	-3439	-3424	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttgcgacgtttttt	8.94	-1	gctacctg	8.64	-1	ttttatga	6.70	-1
2	669	646	736	NM_079463	ll.40287	kni	NaN	NaN	NaN	aataaaaaagaaaa	8.14	1	tctacctg	8.68	-1	ttttatga	6.70	-1
2	669	646	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	aataaaaaagaaaa	8.14	1	tctacctg	8.68	-1	ttttatga	6.70	-1
2	626	646	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	tctacctg	8.68	-1	ttttatga	6.70	-1
2	626	646	550	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	tctacctg	8.68	-1	ttttatgg	6.31	-1
2	587	646	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	tctacctg	8.68	-1	ttttatga	6.70	-1
2	587	646	550	NM_079463	ll.40287	kni	NaN	NaN	NaN	tgctgcattttttt	8.80	-1	tctacctg	8.68	-1	ttttatgg	6.31	-1
3	-1133	-1190	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaaaatctacataa	8.65	1	cctaccta	7.98	-1	ttttatgt	6.34	-1
6	-3089	-3129	-3071	NM_078700	ll.33059	run	NaN	NaN	NaN	cgttgcttattttt	8.18	-1	cctacctg	8.89	-1	ttttatgg	6.31	-1

13 motifs = 35 212 0 0 thresholds = 10.187 ||8.953 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-439	-396	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggca	10.66	-1	caaaatgcagcgccagaaaatgcaaa	10.71	1
1	-2258	-2226	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggct	10.39	-1	gaaaaaacctgaagtaaaatggcaaa	10.61	1
2	552	456	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttatggcc	11.48	-1	atttccatcttttccttatttttttg	9.75	-1
2	-520	-606	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttggca	10.66	-1	aaaaaccggcggactttgaaaagaaa	10.47	1
3	-1139	-1133	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	aaaaatctacataaaaccatttaaaa	12.57	1
4	-620	-560	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttatggca	11.06	-1	ttttcgccgttttattgccaattttt	12.42	-1
4	-1985	-2015	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttttgttttggccgaccgattttt	10.45	-1
5	957	998	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	aaaaactgacttcatgcgagtccaaa	9.58	1
5	-2207	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	tttttttttcttttttgtttattttc	14.83	-1
8	-4489	-4563	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttatggct	10.80	-1	caaaaatgctcaacattaaaatcaaa	11.64	1
9	2628	2683	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttatggct	10.80	-1	aaaaaaataaaaaaaaccagctcaga	9.37	1
9	2319	2410	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	aaaaaaattaaaaattttaataaaaa	13.76	1
9	2319	2262	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	aaaaactttaagcgatttaaaaaaaa	11.43	1
9	2222	2262	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttatggca	11.06	-1	aaaaactttaagcgatttaaaaaaaa	11.43	1
10	-1982	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggca	11.06	-1	tttttttttcgctgaatctggttttt	11.80	-1
10	-2076	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttttcgctgaatctggttttt	11.80	-1
11	-2569	-2575	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttcaggtctttccaaattatttttt	11.91	-1
11	-2657	-2575	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggct	10.80	-1	tttcaggtctttccaaattatttttt	11.91	-1
11	-2657	-2736	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggct	10.80	-1	tttgtacttcgattttcgattttttt	12.47	-1
13	-335	-414	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttttatggct	10.80	-1	aaaaaaaaagaagcaagagaaagaaa	13.47	1
13	-826	-860	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	tttattttataaaacttattattttt	11.92	-1

14 motifs = 64 224 0 0 thresholds = 7.766 ||9.031 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2121	2207	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcagtttc	9.25	-1	cctgcccccttggc	9.36	-1
2	-3114	-3145	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttttttttttt	8.73	-1	cctgccgccacccg	10.22	-1
3	-3582	-3573	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttttcagtttc	9.89	-1	cgcaagaaggcagg	9.13	1
5	-2125	-2056	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	cgcgggcgggccgc	10.51	1
5	-2138	-2056	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaaaagaaaata	8.49	-1	cgcgggcgggccgc	10.51	1
5	-2147	-2056	NM_079253	ll.38995	h	NaN	NaN	NaN	cttttttgctttt	8.76	1	cgcgggcgggccgc	10.51	1
6	-646	-685	NM_078700	ll.33059	run	NaN	NaN	NaN	gtttcccattttc	8.33	-1	cccgcccccgcccc	9.03	-1
6	-646	-703	NM_078700	ll.33059	run	NaN	NaN	NaN	gtttcccattttc	8.33	-1	cccgcccccgcccc	9.03	-1
6	-4580	-4598	NM_078700	ll.33059	run	NaN	NaN	NaN	cttttccgctttt	10.27	-1	gctgccgccgcgct	10.74	-1
7	-198	-209	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctctctctctttc	8.92	-1	gcggccatcatgcg	10.20	-1
7	-1994	-1969	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	gcggcccacctgcc	9.62	-1
7	-4345	-4428	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cttttccgctttc	9.35	-1	ctcgagtcggcagc	10.78	1
10	-1272	-1355	NM_080310	ll.31227	gt	NaN	NaN	NaN	cttttcttatttc	8.44	-1	ctcgggctggcggc	9.09	1

15 motifs = 233 268 0 0 thresholds = 7.728 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3439	-3424	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	ttttatga	6.70	-1
2	646	736	NM_079463	ll.40287	kni	NaN	NaN	NaN	tctacctg	8.68	-1	ttttatga	6.70	-1
2	646	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	tctacctg	8.68	-1	ttttatga	6.70	-1
2	646	550	NM_079463	ll.40287	kni	NaN	NaN	NaN	tctacctg	8.68	-1	ttttatgg	6.31	-1
2	-1302	-1253	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	ttttatga	6.70	-1
2	-1302	-1318	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	ttttatgc	6.31	-1
2	-1302	-1348	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	ttttatgg	6.31	-1
3	-1190	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	cctaccta	7.98	-1	ttttatgt	6.34	-1
3	-1190	-1137	NM_079143	ll.38012	kr	NaN	NaN	NaN	cctaccta	7.98	-1	acataaaa	6.34	1
5	-4620	-4704	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	ttttatgg	6.31	-1
6	-3129	-3071	NM_078700	ll.33059	run	NaN	NaN	NaN	cctacctg	8.89	-1	ttttatgg	6.31	-1
7	-4098	-4041	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctaccta	7.77	-1	ttttatgt	6.34	-1
7	-4098	-4069	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctaccta	7.77	-1	ttttatgt	6.34	-1
9	-1480	-1417	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gctaccta	7.73	-1	ttttatgc	6.31	-1

16 motifs = 35 268 0 0 thresholds = 10.187 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	726	736	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttggcc	11.08	-1	ttttatga	6.70	-1
2	726	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttggcc	11.08	-1	ttttatga	6.70	-1
3	-1139	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	ttttatgt	6.34	-1
4	-1985	-1909	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttatgg	6.31	-1
8	3546	3479	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtttatggca	10.19	-1	ttttatgt	6.34	-1
9	2319	2220	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	ttttatgg	6.31	-1
10	-1982	-2078	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggca	11.06	-1	ttttatgg	6.31	-1
10	-2076	-1984	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	ttttatgg	6.31	-1
11	-2569	-2659	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggcc	11.48	-1	ttttatgg	6.31	-1
11	-2657	-2571	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggct	10.80	-1	ttttatgg	6.31	-1
13	-826	-915	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	ccataaaa	6.31	1

17 motifs = 43 64 202 0 thresholds = 10.138 ||7.766 ||8.353 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-379	-434	-393	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccttttgcattt	10.18	-1	ctttgccgttttt	9.93	-1	aatgcagcgccagaa	9.38	1
1	-379	-476	-393	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccttttgcattt	10.18	-1	ctctctcactttt	9.50	-1	aatgcagcgccagaa	9.38	1
6	-589	-646	-679	NM_078700	ll.33059	run	NaN	NaN	NaN	cgctttgaattt	10.57	-1	gtttcccattttc	8.33	-1	agggccgccaaaaca	9.76	1
8	2032	1964	2024	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgatttgcatat	11.84	-1	gtctttctttttt	8.37	-1	ttggttcgcagcgat	10.11	-1
8	2032	1950	2024	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgatttgcatat	11.84	-1	gtctttctttttt	8.37	-1	ttggttcgcagcgat	10.11	-1
9	-4432	-4509	-4474	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	cacgttgcattt	10.41	-1	attttcctctttc	8.60	-1	tgcttctgcagcggt	9.00	-1

18 motifs = 100 212 0 0 thresholds = 9.655 ||8.953 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2324	-2226	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgaaaccaatttg	9.97	1	gaaaaaacctgaagtaaaatggcaaa	10.61	1
3	-4727	-4693	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgcattaaatttg	10.70	1	tttgctatatgaacagatttattttt	11.67	-1
5	749	676	NM_079253	ll.38995	h	NaN	NaN	NaN	cgaatttatctcgc	10.66	-1	aaaaacactctgagccagaccaaaaa	10.39	1
7	-585	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgcacaaaaggcg	11.06	1	tttcaaccataaatttgaaatttttc	10.15	-1
8	-2168	-2246	NM_164966	ll.34569	salm	NaN	NaN	NaN	cattttatttgcgc	10.80	-1	ttttcaacatcctttcctcatttttt	11.89	-1
8	-2223	-2246	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgtctttctttcgc	10.51	-1	ttttcaacatcctttcctcatttttt	11.89	-1
10	-2050	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	cgtttttttttcgc	11.80	-1	tttttttttcgctgaatctggttttt	11.80	-1
13	-1029	-1096	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	catttttcattcgc	9.79	-1	ttttttgccttgacattcgcattttg	9.54	-1

19 motifs = 31 41 261 0 thresholds = 9.075 ||9.521 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-338	-350	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	ctctctcgctc	12.70	-1	ctgagtga	8.28	-1
1	-338	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	ctctctcgctc	12.70	-1	gtgagtga	7.88	-1
3	-69	-104	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgtgcgtgtgagcgggag	11.66	1	ctctcccgctc	10.52	-1	gtgagtga	7.88	-1
7	-212	-196	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctt	11.20	-1	ctgagtgc	7.89	-1
7	-212	-196	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctt	11.20	-1	ttgagtga	8.87	-1
7	-212	-196	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctt	11.20	-1	ttgagtgc	8.48	-1
8	-527	-625	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	taataacacacacacacac	12.21	-1	ctctcccgctc	10.52	-1	gtgagtga	7.88	-1
8	-527	-625	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	taataacacacacacacac	12.21	-1	ctctcccgctc	10.52	-1	gtgagtga	7.88	-1
8	-605	-625	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctctcccgctc	10.52	-1	gtgagtga	7.88	-1
8	-605	-665	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctc	11.31	-1	gtgagtga	7.88	-1
8	-625	-665	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctc	11.31	-1	gtgagtga	7.88	-1
8	-625	-665	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctc	11.31	-1	gtgagtga	7.88	-1
13	-299	-242	-254	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	cccacccccacagacacac	10.85	-1	ctcactcactc	9.58	-1	tcactcac	7.88	1

20 motifs = 35 177 0 0 thresholds = 10.187 ||8.297 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-439	-535	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggca	10.66	-1	ttgcccaaaaaacaa	8.78	1
2	552	595	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttagggaaca	9.84	-1
4	-1985	-2025	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttgttttggccga	10.38	-1
5	957	985	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	ttggccagaaaaaaa	12.01	1
5	-2207	-2142	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	tttcttttttgttta	8.73	-1
6	-3069	-3081	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttatggcc	11.48	-1	tattttttgggaaca	8.75	-1
9	2319	2279	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	taaaaaaaacaaaaa	8.60	1
9	2222	2279	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttatggca	11.06	-1	taaaaaaaacaaaaa	8.60	1
10	-1982	-2046	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggca	11.06	-1	tttttttttcgctga	8.85	-1
10	-2076	-2046	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttttcgctga	8.85	-1
13	-335	-423	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttttatggct	10.80	-1	tcctgtaaaaaaaaa	8.49	1

21 motifs = 95 135 0 0 thresholds = 10.183 ||9.852 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1148	1160	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaagc	11.02	-1	gcttttggccgatc	11.92	-1
1	-391	-403	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaatg	10.55	-1	attcggccaaaatg	11.07	1
1	-2915	-2903	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaacatc	10.33	-1	gatgttggccgaac	11.23	-1
1	-4239	-4251	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaggg	10.40	-1	gttcggccaaaggg	12.05	1
2	-60	-72	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcggccagtagg	11.18	-1	gttcggccagtagg	12.16	1
4	61	49	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcggccagtagg	11.18	-1	ggtcggccagtagg	11.15	1
5	-4451	-4463	NM_079253	ll.38995	h	NaN	NaN	NaN	tcggccaggagg	11.56	-1	gctcggccaggagg	11.03	1
6	452	440	NM_078700	ll.33059	run	NaN	NaN	NaN	tcggccagcagc	11.80	-1	actcggccagcagc	11.59	1
6	-2617	-2629	NM_078700	ll.33059	run	NaN	NaN	NaN	n	NaN	NaN	aatcggccatcggc	10.11	1
8	4249	4237	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcggccagcagc	11.80	-1	agtcggccagcagc	11.30	1
10	-2206	-2218	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcggccatcagg	11.43	-1	gttcggccatcagg	11.53	1

22 motifs = 102 243 0 0 thresholds = 10.493 ||8.185 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-917	-881	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttattcaaaatgaaata	11.44	-1	gaaacccc	8.68	-1
5	398	454	NM_079253	ll.38995	h	NaN	NaN	NaN	tctttcgagaaaaataa	10.65	1	aaaacccc	8.79	-1
6	-1487	-1513	NM_078700	ll.33059	run	NaN	NaN	NaN	ttattttgaatgaaaca	12.58	-1	gaaatccc	8.19	-1
8	-2995	-2955	NM_164966	ll.34569	salm	NaN	NaN	NaN	tatttttaatagaataa	11.42	1	aaaatccc	8.29	-1
9	6650	6711	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tattttgattttaataa	11.80	1	gaaatccc	8.19	-1
9	2494	2506	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttattaagtgttaaaaa	10.82	-1	aaaacccc	8.79	-1
12	2099	2079	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttttttacgttaaaca	11.42	-1	aaaatccc	8.29	-1

23 motifs = 59 247 261 0 thresholds = 8.095 ||7.063 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-395	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaggcagctgca	11.46	1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
1	-416	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaggcagctgca	11.46	1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
7	-91	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tgccgccgctgctg	8.78	-1	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
8	-1169	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaggcaacaaca	9.00	1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
11	51	126	102	NM_164546	ll.33583	odd	NaN	NaN	NaN	tgctgctgctgctg	10.96	-1	gagacagg	7.06	-1	ttgagtga	8.87	-1

24 motifs = 35 204 268 0 thresholds = 10.187 ||7.942 ||6.314 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
2	726	669	736	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttggcc	11.08	-1	aataaaaaagaaaa	8.14	1	ttttatga	6.70	-1
2	726	669	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttggcc	11.08	-1	aataaaaaagaaaa	8.14	1	ttttatga	6.70	-1
3	-1139	-1133	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	aaaaatctacataa	8.65	1	ttttatgt	6.34	-1
9	2319	2280	2220	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	ttttgtttttttta	9.12	-1	ttttatgg	6.31	-1
10	-1982	-2053	-2078	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggca	11.06	-1	ttttacgttttttt	8.72	-1	ttttatgg	6.31	-1
10	-2076	-2053	-1984	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	ttttacgttttttt	8.72	-1	ttttatgg	6.31	-1
13	-826	-820	-915	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	taaaaaaatcaaaa	8.95	1	ccataaaa	6.31	1

25 motifs = 161 212 223 0 thresholds = 9.392 ||8.953 ||9.064 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2201	2287	2220	NM_169233	ll.41032	hb	NaN	NaN	NaN	cccatgcccccacccctgcccc	11.55	-1	caaaaaagcccagacgaaaggcgaaa	10.32	1	cccatgcccccacccctgcc	13.22	-1
5	-2095	-2125	-2055	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgccgccgacaacg	10.29	1	tttttttttcttttttgtttattttc	14.83	-1	caagtgccgcctctgccgcc	11.18	-1
5	-2095	-2125	-2073	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgccgccgacaacg	10.29	1	tttttttttcttttttgtttattttc	14.83	-1	caagtgccgcctctgccgcc	11.18	-1
8	-2067	-2025	-2108	NM_164966	ll.34569	salm	NaN	NaN	NaN	cagcgacgccgacgcaagcagc	11.74	-1	ttttatttcagcttattgttgttttt	12.77	-1	ccctgtcccacccccttgtc	10.38	-1
12	3241	3180	3266	NM_057311	ll.34669	nub	NaN	NaN	NaN	gcagcttccgccgccgccgacg	11.01	1	ttttattttatttatttatgttattt	10.33	-1	cagcttccgccgccgccgac	12.01	-1

26 motifs = 100 231 0 0 thresholds = 9.655 ||9.716 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3466	-3417	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgcacaaaaaacg	11.76	1	cataaaaa	9.72	-1
2	665	743	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgcgaaaaaaatg	10.54	1	cataaaaa	9.72	-1
3	-392	-446	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgaagataattcg	10.77	1	cataaaaa	9.72	-1
7	-585	-634	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgcacaaaaggcg	11.06	1	cataaaaa	9.72	-1
10	-2050	-1991	NM_080310	ll.31227	gt	NaN	NaN	NaN	cgtttttttttcgc	11.80	-1	cataaaaa	9.72	-1

27 motifs = 95 244 0 0 thresholds = 10.183 ||7.578 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-391	-464	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaatg	10.55	-1	cagaaatc	8.46	-1
2	-60	-12	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcggccagtagg	11.18	-1	cagaaatc	8.46	-1
7	2030	1962	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcggccagagag	10.30	-1	cagaaatc	8.46	-1
12	-1717	-1813	NM_057311	ll.34669	nub	NaN	NaN	NaN	tcggccagcatc	11.01	-1	cagaaatc	8.46	-1

28 motifs = 208 214 0 0 thresholds = 8.478 ||9.417 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1244	1188	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccgaccccccccc	9.50	-1	tttgcccgctc	10.40	-1
5	865	825	NM_079253	ll.38995	h	NaN	NaN	NaN	cccaccagctccc	9.17	-1	ttgggcggcac	9.83	-1
6	-702	-678	NM_078700	ll.33059	run	NaN	NaN	NaN	accacccgccccc	9.28	-1	tttggcggccc	10.92	-1
8	-972	-923	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgctctctcga	8.51	-1	ttttgcggctc	10.49	-1
9	1500	1549	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	cgccgccaccccc	8.98	-1	attgccggctc	9.42	-1

29 motifs = 48 246 0 0 thresholds = 7.864 ||6.627 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	643	578	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttggcattt	10.03	-1	aggtagaa	6.63	-1
2	-1522	-1476	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttccattt	11.07	-1	aggtatac	7.56	-1
3	-3350	-3423	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttgcattg	9.26	-1	aggtagac	8.16	-1
3	-3367	-3423	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttgacattt	7.90	-1	aggtagac	8.16	-1
3	-3819	-3769	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttgctttt	10.25	-1	aggtaggc	8.51	-1
3	-3819	-3904	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttgctttt	10.25	-1	cggtaggc	6.69	-1
6	-644	-729	NM_078700	ll.33059	run	NaN	NaN	NaN	tttcccattt	10.20	-1	aggtaggc	8.51	-1
8	535	620	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttccattt	11.07	-1	aggtaggc	8.51	-1
10	-238	-231	NM_080310	ll.31227	gt	NaN	NaN	NaN	tttgcccttt	8.94	-1	aggtaggc	8.51	-1
10	-245	-231	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaggccaaa	8.39	-1	aggtaggc	8.51	-1
12	-3236	-3276	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttcctttt	10.80	-1	aggtaggc	8.51	-1

30 motifs = 144 201 0 0 thresholds = 9.481 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2976	2987	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttcgcagctcgc	11.14	-1	tcgctgctaagctgg	9.28	-1
4	1640	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	atcgcagcgacc	10.33	-1	tcgctgcgattggcc	10.54	-1
6	-2510	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	ggtccttcgcagcga	10.91	1
7	-4446	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	ctcctttcgcagcga	9.95	1
8	2025	2010	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcgatt	10.61	-1	gttggttcgcagcga	9.31	1
8	-395	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	gaacgttcgcagcga	10.92	1

31 motifs = 98 121 0 0 thresholds = 8.718 ||9.671 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1203	-1254	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttccccaccccc	11.39	-1	cggcggcgat	11.15	-1
4	1705	1676	NM_078946	ll.36039	eve	NaN	NaN	NaN	ccaccccgcgccc	8.99	-1	cggcggccat	10.87	-1
5	-2970	-3044	NM_079253	ll.38995	h	NaN	NaN	NaN	ctcccctaccccc	9.95	-1	ccgcggccat	9.99	-1
8	4529	4476	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctgccccctgccg	9.00	-1	cgccggcaat	9.74	-1
8	4507	4476	NM_164966	ll.34569	salm	NaN	NaN	NaN	tacccccttcccc	8.86	-1	cgccggcaat	9.74	-1

32 motifs = 182 214 0 0 thresholds = 9.101 ||9.417 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1751	1659	NM_078946	ll.36039	eve	NaN	NaN	NaN	cactcgagctgtgaccgccgcac	10.83	-1	attggccgctc	9.98	-1
6	-710	-678	NM_078700	ll.33059	run	NaN	NaN	NaN	gtgcctacctgtaccacccgccc	10.45	-1	tttggcggccc	10.92	-1
8	-371	-284	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgatttctctcagtgccgcac	10.70	-1	ttttgcggcac	10.49	-1
8	-860	-923	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcccgagagaaagagagagaggg	9.13	1	ttttgcggctc	10.49	-1
9	1531	1549	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gagcgggcggaacaggtggagcc	9.28	1	attgccggctc	9.42	-1

33 motifs = 49 84 268 0 thresholds = 8.665 ||11.278 ||6.314 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
2	518	479	550	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctattttttgttt	10.38	-1	aaatcacaattttca	11.28	1	ttttatgg	6.31	-1
7	-3962	-3952	-4041	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tattattttggcttt	9.95	-1	taaaatttattattt	13.03	-1	ttttatgt	6.34	-1
7	-3962	-3989	-4041	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tattattttggcttt	9.95	-1	taaaatttattattt	13.03	-1	ttttatgt	6.34	-1
12	4623	4611	4542	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttcccttttatttt	9.84	-1	tcaaatttgtgtttt	11.94	-1	ttttatgt	6.34	-1
13	-878	-862	-824	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tatatgttttatttt	10.35	-1	taaaacttattattt	12.44	-1	ccataaaa	6.31	1
13	-878	-862	-915	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tatatgttttatttt	10.35	-1	taaaacttattattt	12.44	-1	ccataaaa	6.31	1

34 motifs = 189 220 0 0 thresholds = 8.353 ||8.923 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1672	-1642	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccacacagcacccgccc	10.23	-1	gcgaacgctaatcg	10.58	1
1	-3436	-3466	NM_169233	ll.41032	hb	NaN	NaN	NaN	cagccagctacctgccc	8.41	-1	gcgcacaaaaaacg	10.98	1
4	-2483	-2464	NM_078946	ll.36039	eve	NaN	NaN	NaN	ggacagtcggctcgtgg	8.35	1	cggctcgtggacgc	9.54	-1
5	-811	-800	NM_079253	ll.38995	h	NaN	NaN	NaN	ccactgcccgatcgccc	8.92	-1	cgcctagcgtgcgc	10.43	-1
5	-843	-800	NM_079253	ll.38995	h	NaN	NaN	NaN	caaccacccaaccaccc	11.81	1	cgcctagcgtgcgc	10.43	-1
6	-4754	-4734	NM_078700	ll.33059	run	NaN	NaN	NaN	gggggagggggatgggg	11.46	1	gcggtcggaagccg	10.04	1
8	2780	2836	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcacgcccccccccccc	8.81	-1	gcgcacgagaagcg	11.55	1

35 motifs = 72 205 0 0 thresholds = 9.948 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-418	-384	NM_078946	ll.36039	eve	NaN	NaN	NaN	gatcggcgctttgt	10.14	-1	cggcagggattcgc	10.02	1
6	-2496	-2439	NM_078700	ll.33059	run	NaN	NaN	NaN	acaaaaggcagcgc	10.50	1	cagctgagagcggc	10.53	1
6	-2496	-2519	NM_078700	ll.33059	run	NaN	NaN	NaN	acaaaaggcagcgc	10.50	1	tcgcagcgagcggc	11.77	1
8	2028	2016	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcgcagcgatttgc	10.25	-1	tcgcagcgatttgc	10.53	1
10	-4990	-4978	NM_080310	ll.31227	gt	NaN	NaN	NaN	gcaaatcgctgcaa	10.95	1	gcaaatcgctgcaa	10.44	-1

36 motifs = 95 270 0 0 thresholds = 10.183 ||7.035 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2915	-2928	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaacatc	10.33	-1	aaatcctttt	7.12	-1
5	-4451	-4465	NM_079253	ll.38995	h	NaN	NaN	NaN	tcggccaggagg	11.56	-1	gaaccctttc	7.30	-1
10	-2206	-2216	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcggccatcagg	11.43	-1	caacccgttc	7.40	-1
12	-1717	-1808	NM_057311	ll.34669	nub	NaN	NaN	NaN	tcggccagcatc	11.01	-1	aaatcctttt	7.12	-1

37 motifs = 64 171 0 0 thresholds = 7.766 ||8.997 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2121	2135	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcagtttc	9.25	-1	cggttgcctggctgc	10.58	-1
1	-2103	-2150	NM_169233	ll.41032	hb	NaN	NaN	NaN	atttcactttttt	9.61	-1	gccgcaggacaaagg	10.24	1
2	774	823	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttcccagtttc	10.06	-1	cagttgctcagcagc	9.55	-1
2	-1847	-1903	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctcattttttc	8.06	-1	gcattgctgggcggc	10.44	-1
2	-1932	-1903	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttattatttt	9.10	-1	gcattgctgggcggc	10.44	-1
2	-3114	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttttttttttt	8.73	-1	gccggccatcaaagg	9.88	1
5	-2125	-2029	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	cttttgatcggctgc	10.67	-1
7	-1994	-1978	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	cggtcgttgggcggc	9.43	-1
8	4336	4249	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttgctttc	8.27	-1	cagtcggccagcagc	9.37	-1
10	-1106	-1132	NM_080310	ll.31227	gt	NaN	NaN	NaN	gttttgcgctttt	7.86	-1	gctggtcagcaaaag	9.28	1
10	-1229	-1132	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttcttgcaatttt	9.51	-1	gctggtcagcaaaag	9.28	1
13	-2038	-1961	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ctctctttttttc	8.22	-1	cgattggctgccggc	10.03	-1

38 motifs = 174 205 0 0 thresholds = 8.500 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1629	1715	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcccgctcgc	10.86	-1	ctgcagagcgcagc	10.88	1
5	-241	-146	NM_079253	ll.38995	h	NaN	NaN	NaN	tcgcgctcgc	10.07	-1	gctacgctccgcaa	9.54	-1
5	-241	-229	NM_079253	ll.38995	h	NaN	NaN	NaN	tcgcgctcgc	10.07	-1	gcgtctcgcagcgg	9.87	-1
6	-2514	-2439	NM_078700	ll.33059	run	NaN	NaN	NaN	ggccgctcgc	9.06	-1	cagctgagagcggc	10.53	1
8	1995	2016	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcccgctggc	9.71	-1	tcgcagcgatttgc	10.53	1

39 motifs = 41 163 0 0 thresholds = 9.521 ||8.570 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-442	-520	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctcactcactc	9.58	-1	gcagccaaaacggctccgcccatg	9.63	-1
3	-104	-60	NM_079143	ll.38012	kr	NaN	NaN	NaN	ctctcccgctc	10.52	-1	ccggcgtgtgtgcgtacgagggtg	9.54	-1
4	1425	1346	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctctctctctc	12.50	-1	gcggagcaaccgcctgcgggcggg	9.61	1
7	-208	-199	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aagagagagag	11.20	1	gcggccatcatgcgagagagcggg	11.79	-1
8	-625	-538	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctcccgctc	10.52	-1	cacacacgtacgcaaaccggttgc	9.12	1
8	-966	-1032	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgctcgctc	11.31	-1	ggctgccaagggctcgttggcggg	8.57	1
8	-1090	-1032	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctttcgctc	10.97	-1	ggctgccaagggctcgttggcggg	8.57	1
8	-1098	-1032	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagcgaaagag	10.97	1	ggctgccaagggctcgttggcggg	8.57	1
8	-1110	-1032	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagtgagtgag	9.58	1	ggctgccaagggctcgttggcggg	8.57	1

40 motifs = 64 182 261 0 thresholds = 7.766 ||9.101 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-381	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcattttc	10.07	-1	cactctctcgctctgactcgctc	12.67	-1	gtgagtga	7.88	-1
2	-336	-326	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctctctcgatttt	9.04	-1	gagagagagagagagactgagcg	10.48	1	gtgagtga	7.88	-1
3	-643	-705	-611	NM_079143	ll.38012	kr	NaN	NaN	NaN	atttccccttttt	9.71	-1	ctctcgctgtttcattttcgccc	12.58	-1	ctgagtga	8.28	-1
8	-1177	-1108	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	cttttttaatttc	8.00	-1	ctcactccctctctctcgctcac	9.18	-1	gtgagtga	7.88	-1

41 motifs = 101 102 0 0 thresholds = 8.962 ||10.493 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1585	1503	NM_169233	ll.41032	hb	NaN	NaN	NaN	gttttttttttttgttt	9.08	-1	ttttttaatggcaaata	11.89	-1
1	-963	-913	NM_169233	ll.41032	hb	NaN	NaN	NaN	aatgaactatgaataat	9.46	1	ttttttttagtccaaaa	12.44	-1
1	-963	-992	NM_169233	ll.41032	hb	NaN	NaN	NaN	aatgaactatgaataat	9.46	1	tgttttctttagaaaaa	12.22	1
1	-963	-1043	NM_169233	ll.41032	hb	NaN	NaN	NaN	aatgaactatgaataat	9.46	1	tgttttctttagaaaaa	12.22	1
2	-1838	-1925	NM_079463	ll.40287	kni	NaN	NaN	NaN	attttttcctctccttt	8.97	-1	ttattatttttgaaaga	11.55	-1
3	164	221	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaagtgtgtacaaaaat	9.87	1	ttttgttgtctaaaaaa	11.15	1
3	-2998	-3043	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttttaaaggctcttt	11.24	-1	tttttaacattccaaaa	10.97	-1
4	-929	-917	NM_078946	ll.36039	eve	NaN	NaN	NaN	atttttatgcaattatt	9.96	-1	ttattcaaaatgaaata	11.44	-1
5	410	398	NM_079253	ll.38995	h	NaN	NaN	NaN	aataagactcgaaaaaa	9.59	1	tctttcgagaaaaataa	10.65	1
6	-4458	-4470	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaaaaaaaaaacaaaa	10.03	1	tgttttccctaaaaaaa	11.45	1
7	-2576	-2641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaagaatggtcaataat	10.36	1	tattgtttttaaaaaaa	12.75	1
7	-3959	-3934	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	attattttggctttatt	9.09	-1	tttttgtaagaaaataa	11.46	1
8	-99	-114	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaataaaccaaaaaa	12.11	1	tttttccctcacaaaaa	11.79	1
8	-3025	-2995	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaattattattaataat	10.15	1	tatttttaatagaataa	11.42	1
8	-3045	-2995	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaattattattaataat	10.15	1	tatttttaatagaataa	11.42	1
9	6692	6650	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	attattaataattcatt	10.43	-1	tattttgattttaataa	11.80	1
9	5855	5807	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gaaaaatatgaaataaa	9.14	1	tgttgtattataaaaaa	12.18	1
9	4705	4635	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttattaatgtgatttt	10.91	-1	tcttttgaatagaaaaa	11.52	1
9	2412	2494	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aaaagtttagaaaaaaa	9.93	1	ttattaagtgttaaaaa	10.82	-1
12	-1368	-1282	NM_057311	ll.34669	nub	NaN	NaN	NaN	attttttatgatttttt	12.96	-1	tttttatatgggaaaga	11.96	-1
13	-822	-848	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ataaaaaaatcaaaaaa	10.48	1	tttttataaaagaaaga	12.27	-1
13	-2681	-2731	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	attttttagtttttatt	12.26	-1	tttttttcatatcaata	10.73	-1
13	-2681	-2745	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	attttttagtttttatt	12.26	-1	tttttttcatatcaata	10.73	-1

42 motifs = 91 204 240 0 thresholds = 10.328 ||7.942 ||7.209 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
3	-2158	-2210	-2227	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttaacaaatt	11.52	-1	aaaaaaaaccaaac	9.09	1	gttactat	7.30	-1
3	-2158	-2210	-2236	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttaacaaatt	11.52	-1	aaaaaaaaccaaac	9.09	1	atagtaac	7.30	-1
6	-4195	-4124	-4187	NM_078700	ll.33059	run	NaN	NaN	NaN	tttaactattt	10.41	-1	ttttgttttttatt	9.12	-1	gttagttt	8.30	-1
7	-1739	-1710	-1691	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttaaataaatt	11.33	-1	ttttgaatttattt	8.32	-1	gttactta	7.80	-1
11	-1029	-1020	-980	NM_164546	ll.33583	odd	NaN	NaN	NaN	tttaattattt	10.67	-1	tttcgagttttttt	10.54	-1	gttagttt	8.30	-1

43 motifs = 98 205 0 0 thresholds = 8.718 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1705	1715	NM_078946	ll.36039	eve	NaN	NaN	NaN	ccaccccgcgccc	8.99	-1	ctgcagagcgcagc	10.88	1
6	-3795	-3808	NM_078700	ll.33059	run	NaN	NaN	NaN	ttaccccagcccc	10.61	-1	gccgatctctgcgg	11.04	-1
7	-1930	-1906	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctgcccttgcccc	9.67	-1	ccgctgtgagtggc	10.37	1
12	-4470	-4531	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctccccctcgccg	9.89	-1	gcaaatcacagcag	9.44	-1

44 motifs = 163 205 0 0 thresholds = 8.570 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2950	2981	NM_169233	ll.41032	hb	NaN	NaN	NaN	gaaaaccggtggaaaattcgcagc	11.40	1	gcagctcgctgcta	10.55	-1
5	-209	-146	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcgatttagcctacgaacctg	11.13	-1	gctacgctccgcaa	9.54	-1
5	-209	-229	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcgatttagcctacgaacctg	11.13	-1	gcgtctcgcagcgg	9.87	-1
6	-2362	-2439	NM_078700	ll.33059	run	NaN	NaN	NaN	cctaccagaatggccatgctcccc	9.21	-1	cagctgagagcggc	10.53	1
7	-1959	-1906	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcggcccacctgccacgggcccac	12.43	-1	ccgctgtgagtggc	10.37	1
12	-4479	-4531	NM_057311	ll.34669	nub	NaN	NaN	NaN	ccccctcgccgccgctgccgctgc	10.27	1	gcaaatcacagcag	9.44	-1

45 motifs = 113 231 0 0 thresholds = 9.538 ||9.716 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	671	743	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttcatttttt	11.42	-1	cataaaaa	9.72	-1
2	513	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttctattttt	10.34	-1	cataaaaa	9.72	-1
3	-3811	-3852	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttccttcttt	10.37	-1	cataaaaa	9.72	-1
6	-2880	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttcccacttt	10.27	-1	cataaaaa	9.72	-1
7	-602	-634	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttctctcttt	10.37	-1	cataaaaa	9.72	-1
8	-3981	-4075	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttccccctttt	10.82	-1	cataaaaa	9.72	-1
12	-2368	-2298	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttcctttttt	11.66	-1	cataaaaa	9.72	-1
13	-855	-817	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaagaaagaaaa	9.64	1	cataaaaa	9.72	-1

46 motifs = 35 143 268 0 thresholds = 10.187 ||7.938 ||6.314 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
3	-1139	-1188	-1125	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	tttggttttgt	10.56	-1	ttttatgt	6.34	-1
8	3546	3509	3479	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtttatggca	10.19	-1	ttttgtttttc	10.22	-1	ttttatgt	6.34	-1
9	2319	2282	2220	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	ttttgtttttt	11.00	-1	ttttatgg	6.31	-1
13	-826	-818	-915	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	aaaaatcaaaa	10.23	1	ccataaaa	6.31	1

47 motifs = 31 83 261 0 thresholds = 9.075 ||7.183 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-338	-350	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	gagtgggtgagtg	7.32	1	ctgagtga	8.28	-1
1	-338	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	gagtgggtgagtg	7.32	1	gtgagtga	7.88	-1
1	-338	-424	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	ctttttggctctt	7.83	-1	gtgagtga	7.88	-1
3	-69	-104	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgtgcgtgtgagcgggag	11.66	1	ggctctcccgctc	8.37	-1	gtgagtga	7.88	-1
7	-212	-156	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	cgcttttgctcgc	7.34	-1	ttgagtga	8.87	-1
7	-212	-196	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctttc	9.57	-1	ctgagtgc	7.89	-1
7	-212	-196	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctttc	9.57	-1	ttgagtga	8.87	-1
7	-212	-196	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctttc	9.57	-1	ttgagtgc	8.48	-1
8	-527	-625	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	taataacacacacacacac	12.21	-1	cgctctcccgctc	12.11	-1	gtgagtga	7.88	-1
8	-527	-625	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	taataacacacacacacac	12.21	-1	cgctctcccgctc	12.11	-1	gtgagtga	7.88	-1
8	-605	-625	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	cgctctcccgctc	12.11	-1	gtgagtga	7.88	-1
8	-605	-665	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctctc	8.57	-1	gtgagtga	7.88	-1
8	-625	-665	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctctc	8.57	-1	gtgagtga	7.88	-1
8	-625	-665	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagcgggagagcgtaca	9.08	1	ctcgctcgctctc	8.57	-1	gtgagtga	7.88	-1
13	-299	-242	-254	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	cccacccccacagacacac	10.85	-1	cactcactcactc	7.53	-1	tcactcac	7.88	1

48 motifs = 179 233 0 0 thresholds = 8.664 ||7.728 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2762	-2668	NM_169233	ll.41032	hb	NaN	NaN	NaN	tgttaatttttgcggc	11.69	-1	gctaccta	7.73	-1
2	667	646	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgaaaaaaatgaaaa	8.98	1	tctacctg	8.68	-1
4	-2214	-2197	NM_078946	ll.36039	eve	NaN	NaN	NaN	gccgaaaaaaaaacaa	12.51	1	cctaccta	7.98	-1
6	-232	-161	NM_078700	ll.33059	run	NaN	NaN	NaN	tggttgttgttgcggc	11.47	-1	gctaccta	7.73	-1
11	-4867	-4960	NM_164546	ll.33583	odd	NaN	NaN	NaN	gctgaaacaatccaaa	9.26	1	gctaccta	7.73	-1

49 motifs = 74 237 0 0 thresholds = 9.608 ||7.478 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1563	1555	NM_169233	ll.41032	hb	NaN	NaN	NaN	gacgctcgcag	9.81	-1	gcgagcgt	8.16	-1
4	1718	1623	NM_078946	ll.36039	eve	NaN	NaN	NaN	gctgctctcag	10.27	-1	gcgagcgg	9.02	-1
6	-2436	-2508	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgctctcag	11.24	-1	gcgagcgg	9.02	-1
6	-2516	-2508	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgctcgctg	11.09	-1	gcgagcgg	9.02	-1
9	6498	6490	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gacgctcgccg	10.09	-1	gcgagcgt	8.16	-1
9	4264	4272	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gccgctcgccg	11.37	-1	gcgagcgg	9.02	-1
11	-159	-77	NM_164546	ll.33583	odd	NaN	NaN	NaN	gctgctctcgg	9.86	-1	gcgagcgg	9.02	-1
12	2452	2460	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgctcgctg	11.09	-1	gcgagcgg	9.02	-1

50 motifs = 35 143 0 0 thresholds = 10.187 ||7.938 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2258	-2270	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggct	10.39	-1	ttttggtttgt	10.79	-1
3	-1139	-1188	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	tttggttttgt	10.56	-1
4	-1462	-1543	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttatggca	11.06	-1	gtttgttttgt	10.35	-1
4	-1985	-2029	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttgttttgg	11.38	-1
5	-2207	-2124	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	ttttgcttttc	9.76	-1
8	3546	3635	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtttatggca	10.19	-1	tttcgtttttg	9.65	-1
8	3546	3509	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtttatggca	10.19	-1	ttttgtttttc	10.22	-1
9	2319	2282	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	ttttgtttttt	11.00	-1
9	2222	2282	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttatggca	11.06	-1	ttttgtttttt	11.00	-1
11	-2657	-2739	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggct	10.80	-1	tttcgattttt	9.06	-1
13	-826	-818	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	aaaaatcaaaa	10.23	1

51 motifs = 93 231 268 0 thresholds = 10.453 ||9.716 ||6.314 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	1656	1715	1708	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttgtcggcaa	10.76	-1	cataaaaa	9.72	-1	ttttatgc	6.31	-1
2	-2063	-2155	-2148	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttaggcca	11.20	-1	cataaaaa	9.72	-1	ttttatgg	6.31	-1
7	-570	-634	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttttcggcca	11.15	-1	cataaaaa	9.72	-1	ttttatga	6.70	-1
7	-3091	-3102	-3174	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttatgggcaa	11.70	-1	cataaaaa	9.72	-1	ttttatgg	6.31	-1
7	-4065	-4034	-4041	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttatgtgcaa	11.19	-1	cataaaaa	9.72	-1	ttttatgt	6.34	-1
11	-2568	-2578	-2659	NM_164546	ll.33583	odd	NaN	NaN	NaN	tttttatggcca	10.89	-1	cataaaaa	9.72	-1	ttttatgg	6.31	-1
11	-2568	-2666	-2659	NM_164546	ll.33583	odd	NaN	NaN	NaN	tttttatggcca	10.89	-1	cataaaaa	9.72	-1	ttttatgg	6.31	-1
12	4430	4413	4406	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttataggcaa	11.60	-1	cataaaaa	9.72	-1	ttttatga	6.70	-1
12	-1712	-1634	-1627	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttgtcggcca	10.45	-1	cataaaaa	9.72	-1	ttttatga	6.70	-1

52 motifs = 185 197 0 0 thresholds = 8.374 ||8.970 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
5	810	831	NM_079253	ll.38995	h	NaN	NaN	NaN	tacacacacgc	9.51	-1	tgagtgccgcc	9.64	-1
6	-286	-233	NM_078700	ll.33059	run	NaN	NaN	NaN	caaacacacac	11.02	-1	ccattgccgcc	10.96	-1
7	-2157	-2171	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cccacacacac	9.32	-1	tctttgccgcc	9.43	-1
8	1871	1818	NM_164966	ll.34569	salm	NaN	NaN	NaN	cacacactcgc	9.90	-1	ctatggcagcc	8.99	-1
13	-1251	-1163	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	gtgtgtgcgtg	10.45	1	cttttgccgcc	9.13	-1

53 motifs = 73 214 0 0 thresholds = 9.213 ||9.417 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1252	1188	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccccaaccgacccccc	9.26	-1	tttgcccgctc	10.40	-1
1	1241	1188	NM_169233	ll.41032	hb	NaN	NaN	NaN	atgaggaggggggggg	10.41	-1	tttgcccgctc	10.40	-1
4	-4207	-4152	NM_078946	ll.36039	eve	NaN	NaN	NaN	cccctggccatcccac	10.30	-1	ttgggccgctc	9.83	-1
6	-697	-678	NM_078700	ll.33059	run	NaN	NaN	NaN	cccgcccccgcccccc	9.33	-1	tttggcggccc	10.92	-1
9	1640	1549	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ccctccgcctgcaccc	9.70	-1	attgccggctc	9.42	-1

54 motifs = 83 83 241 0 thresholds = 7.183 ||7.183 ||8.467 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-424	-478	-496	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctttttggctctt	7.83	-1	cgctctctcactt	11.43	-1	n	NaN	NaN
1	-478	-424	-496	NM_169233	ll.41032	hb	NaN	NaN	NaN	cgctctctcactt	11.43	-1	ctttttggctctt	7.83	-1	n	NaN	NaN
3	-2018	-2026	-2004	NM_079143	ll.38012	kr	NaN	NaN	NaN	cttttttccgctt	8.85	-1	agggggaaaagcg	7.58	-1	n	NaN	NaN
3	-2026	-2018	-2004	NM_079143	ll.38012	kr	NaN	NaN	NaN	agggggaaaagcg	7.58	-1	cttttttccgctt	8.85	-1	n	NaN	NaN
10	-291	-314	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctgtcccgctc	9.00	-1	ctctctgtctcac	7.23	-1	cgaaaggg	9.07	-1
10	-291	-314	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctgtcccgctc	9.00	-1	ctctctgtctcac	7.23	-1	ggaaaggg	9.07	-1
10	-291	-362	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctgtcccgctc	9.00	-1	ccctttccctcat	7.36	-1	cgaaaggg	9.07	-1
10	-291	-362	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctgtcccgctc	9.00	-1	ccctttccctcat	7.36	-1	ggaaaggg	9.07	-1
10	-314	-291	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ctctgtcccgctc	9.00	-1	cgaaaggg	9.07	-1
10	-314	-291	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ctctgtcccgctc	9.00	-1	ggaaaggg	9.07	-1
10	-314	-362	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ccctttccctcat	7.36	-1	cgaaaggg	9.07	-1
10	-314	-362	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ccctttccctcat	7.36	-1	ggaaaggg	9.07	-1
10	-362	-291	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctgtcccgctc	9.00	-1	cgaaaggg	9.07	-1
10	-362	-291	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctgtcccgctc	9.00	-1	ggaaaggg	9.07	-1
10	-362	-314	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctctgtctcac	7.23	-1	cgaaaggg	9.07	-1
10	-362	-314	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctctgtctcac	7.23	-1	ggaaaggg	9.07	-1
12	-2181	-2206	-2195	NM_057311	ll.34669	nub	NaN	NaN	NaN	atctctttcgctc	7.81	-1	ccctttcgcactc	10.49	-1	cgaaaggg	9.07	-1
12	-2206	-2181	-2195	NM_057311	ll.34669	nub	NaN	NaN	NaN	ccctttcgcactc	10.49	-1	atctctttcgctc	7.81	-1	cgaaaggg	9.07	-1
13	-4929	-4939	-4974	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aggtgcaaaagag	7.94	1	aggtgcaaaagag	7.94	1	n	NaN	NaN
13	-4939	-4929	-4974	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aggtgcaaaagag	7.94	1	aggtgcaaaagag	7.94	1	n	NaN	NaN

55 motifs = 258 269 0 0 thresholds = 7.840 ||8.553 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	557	563	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttac	8.11	-1	atcgtaaaaaa	8.72	-1
2	-2357	-2455	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttac	8.11	-1	acaataaaaaa	9.03	-1
2	-2432	-2455	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttac	8.11	-1	acaataaaaaa	9.03	-1
3	-984	-1037	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttttac	8.11	-1	ataataaaaaa	9.05	-1
3	-998	-1037	NM_079143	ll.38012	kr	NaN	NaN	NaN	ctttttac	9.53	1	ataataaaaaa	9.05	-1
4	-2690	-2729	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttttac	8.11	-1	atcttaaaaaa	8.63	-1
5	-3661	-3733	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttttac	8.11	-1	gacataaaaaa	9.12	-1
6	-4936	-4864	NM_078700	ll.33059	run	NaN	NaN	NaN	ctttttac	9.53	-1	aaaataaaaaa	8.61	-1
6	-4936	-4973	NM_078700	ll.33059	run	NaN	NaN	NaN	ctttttac	9.53	-1	agaataaaaaa	9.07	-1
8	-3659	-3703	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctttttac	9.53	-1	aaaataaaaaa	8.61	-1
11	-2773	-2779	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttac	8.11	-1	agcgtaaaaaa	8.75	-1
12	-1596	-1635	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctttttac	9.53	-1	atcataaaaaa	9.61	-1

56 motifs = 83 185 261 0 thresholds = 7.183 ||8.374 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-350	-336	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	gagtgggtgagtg	7.32	1	cactcactcac	8.63	-1	ctgagtga	8.28	-1
1	-350	-336	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	gagtgggtgagtg	7.32	1	cactcactcac	8.63	-1	gtgagtga	7.88	-1
1	-424	-336	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctttttggctctt	7.83	-1	cactcactcac	8.63	-1	gtgagtga	7.88	-1
2	-295	-207	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	cactcactcactc	7.53	-1	cacgcacacat	8.37	-1	gtgagtga	7.88	-1
3	-104	-79	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	ggctctcccgctc	8.37	-1	cgcacacacgc	9.70	-1	gtgagtga	7.88	-1
3	-104	-114	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	ggctctcccgctc	8.37	-1	cacacgcacgc	8.95	-1	gtgagtga	7.88	-1
8	-625	-531	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgctctcccgctc	12.11	-1	aacacacacac	9.13	-1	gtgagtga	7.88	-1
8	-625	-531	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgctctcccgctc	12.11	-1	aacacacacac	9.13	-1	gtgagtga	7.88	-1
8	-625	-605	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgctctcccgctc	12.11	-1	cactcacacac	10.36	-1	gtgagtga	7.88	-1
8	-625	-605	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgctctcccgctc	12.11	-1	cactcacacac	10.36	-1	gtgagtga	7.88	-1
8	-665	-605	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgctcgctctc	8.57	-1	cactcacacac	10.36	-1	gtgagtga	7.88	-1
8	-665	-605	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgctcgctctc	8.57	-1	cactcacacac	10.36	-1	gtgagtga	7.88	-1
13	-242	-297	-254	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	cactcactcactc	7.53	-1	cacagacacac	9.13	-1	tcactcac	7.88	1

57 motifs = 189 225 0 0 thresholds = 8.353 ||9.484 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1672	-1585	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccacacagcacccgccc	10.23	-1	gcgctgatcctgcg	10.76	-1
4	-2483	-2537	NM_078946	ll.36039	eve	NaN	NaN	NaN	ggacagtcggctcgtgg	8.35	1	cgcacaaagagcgg	11.20	1
5	-811	-801	NM_079253	ll.38995	h	NaN	NaN	NaN	ccactgcccgatcgccc	8.92	-1	ccgcctagcgtgcg	10.61	-1
5	-843	-801	NM_079253	ll.38995	h	NaN	NaN	NaN	caaccacccaaccaccc	11.81	1	ccgcctagcgtgcg	10.61	-1
8	2780	2837	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcacgcccccccccccc	8.81	-1	cgcacgagaagcgg	12.12	1

58 motifs = 47 164 0 0 thresholds = 10.161 ||7.740 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-375	-344	NM_169233	ll.41032	hb	NaN	NaN	NaN	tatccttttgc	10.91	-1	cccactctctcgctctgactcgctcat	9.02	-1
5	-4319	-4357	NM_079253	ll.38995	h	NaN	NaN	NaN	aatcctttcgc	11.46	-1	aagtcagacagggagcgggtgggcgga	8.21	1
10	-1124	-1157	NM_080310	ll.31227	gt	NaN	NaN	NaN	aatccttttgc	11.52	-1	cgcacaatccaacgaattcgccatcgc	8.27	-1
12	-4364	-4282	NM_057311	ll.34669	nub	NaN	NaN	NaN	tatcctttggc	10.67	-1	gaggagcaggatgagcaggagcaggcg	8.75	1
12	-4364	-4454	NM_057311	ll.34669	nub	NaN	NaN	NaN	tatcctttggc	10.67	-1	gtcactccccctcgccgccgctgccgc	11.19	-1

59 motifs = 130 209 0 0 thresholds = 9.096 ||8.525 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	3453	3539	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccgcccagccaccc	9.83	-1	agagaaaaaaaaaataaaagcgaggaa	8.84	1
1	3453	3486	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccgcccagccaccc	9.83	-1	aagcacaccaaaaaaagagaaaaaaaa	8.76	1
4	-4316	-4389	NM_078946	ll.36039	eve	NaN	NaN	NaN	attcacccccaccc	9.11	-1	aaagtccatcctaatctattgaaaaaa	8.84	1
5	-4345	-4288	NM_079253	ll.38995	h	NaN	NaN	NaN	gggtgggcggaagg	11.39	1	aaactccaatatttaccaaataccaaa	11.00	1
6	1296	1360	NM_078700	ll.33059	run	NaN	NaN	NaN	ccatccccccaacc	11.97	-1	tttactgacttcccgccctttttcttt	10.61	-1
6	1296	1215	NM_078700	ll.33059	run	NaN	NaN	NaN	ccatccccccaacc	11.97	-1	ttaaagattttatcattatttttgctt	8.77	-1
7	-2159	-2181	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ccccacacacaccc	9.72	-1	ttttattgttggaaattacgattcttt	11.25	-1
7	-2159	-2205	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ccccacacacaccc	9.72	-1	ttttattgttggaaattacgattcttt	11.25	-1
9	-3477	-3538	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gtttgggggcgggg	9.53	1	tttttttttttttgtggattacatttt	9.16	-1
13	1548	1576	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	acacccacccaccc	11.10	-1	ttatctcatttgacttcaatttgtttt	8.88	-1
13	-321	-415	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccctttccccaccc	9.28	-1	aaaaaaaaagaagcaagagaaagaaaa	12.75	1

60 motifs = 48 124 192 0 thresholds = 7.864 ||8.419 ||9.983 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2302	2271	2258	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttcgccttt	8.01	-1	tgttgctgtt	8.48	-1	ggctttgttgctgttgttg	11.18	1
1	2023	1962	2054	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttccattt	11.07	-1	tgtttttgtt	10.98	-1	ggcggtgttggggtggggg	10.90	1
1	2014	1962	2054	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaatggcaaa	10.58	-1	tgtttttgtt	10.98	-1	ggcggtgttggggtggggg	10.90	1
5	433	421	334	NM_079253	ll.38995	h	NaN	NaN	NaN	tttggctttg	8.51	-1	tttttttttt	10.36	-1	ggcaccgccgttgtgccgg	10.21	1
5	-2125	-2149	-2092	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttgctttt	10.25	-1	tttttctttt	9.11	-1	gcctctgccgccgacaacg	11.54	1
9	5611	5545	5570	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttggctttt	9.76	-1	tgttgttgtt	9.73	-1	cagcagcaacaacaacggc	10.25	-1
11	67	88	59	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttgctttt	10.25	-1	tgttgctgtt	8.48	-1	cagcggcagcagcagcagc	10.48	-1

61 motifs = 166 188 0 0 thresholds = 7.409 ||8.817 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2261	-2291	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttggctgtt	10.41	-1	acggcgattt	8.82	-1
1	-2298	-2291	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttggctctt	9.31	-1	acggcgattt	8.82	-1
3	20	-4	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttggctctg	7.80	-1	gcagcgaatt	9.65	-1
4	-1500	-1454	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttcgctgcc	9.39	-1	gcagcgattt	10.43	-1
5	-965	-1000	NM_079253	ll.38995	h	NaN	NaN	NaN	tttggctttt	9.91	-1	acagcgattt	10.04	-1
9	-2576	-2569	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttggcagct	7.41	-1	gcagcaattt	9.41	-1
10	-4909	-4988	NM_080310	ll.31227	gt	NaN	NaN	NaN	tttcgcttct	9.02	-1	gcagcgattt	10.43	-1

62 motifs = 196 234 0 0 thresholds = 9.196 ||8.919 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2505	2440	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctgccagatagcacagc	10.06	-1	aacagaaa	8.92	-1
2	695	637	NM_079463	ll.40287	kni	NaN	NaN	NaN	gttgcataatccggcagc	9.35	1	aaaagaaa	9.40	-1
5	-2055	-2139	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgccgccgac	10.09	-1	aaaagaaa	9.40	-1
5	-2079	-2139	NM_079253	ll.38995	h	NaN	NaN	NaN	tctgccgacgctgaccgc	10.68	1	aaaagaaa	9.40	-1
5	-2079	-2155	NM_079253	ll.38995	h	NaN	NaN	NaN	tctgccgacgctgaccgc	10.68	1	aaaagaaa	9.40	-1
5	-2170	-2139	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgccaacgttttccga	10.04	-1	aaaagaaa	9.40	-1
5	-2170	-2155	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgccaacgttttccga	10.04	-1	aaaagaaa	9.40	-1
6	-6	75	NM_078700	ll.33059	run	NaN	NaN	NaN	actgccaacgatcgcagc	11.54	-1	aacagaaa	8.92	-1
8	1801	1879	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttgtgacctatggcagc	10.70	1	aaaagaaa	9.40	-1

63 motifs = 177 244 0 0 thresholds = 8.297 ||7.578 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-535	-464	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttgcccaaaaaacaa	8.78	1	cagaaatc	8.46	-1
2	-1475	-1394	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttgttaagagta	10.66	-1	caggaacc	7.58	-1
3	571	553	NM_079143	ll.38012	kr	NaN	NaN	NaN	tcgaccaaaacaaaa	10.28	1	caggaacc	7.58	-1
4	-2025	-1943	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttgttttggccga	10.38	-1	cagaaatc	8.46	-1
7	1524	1426	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tttttgtttttagta	9.50	-1	cggaaacc	7.97	-1
12	-3247	-3261	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttttgtgttggaaa	8.90	-1	cagaaatc	8.46	-1
13	-3117	-3045	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	gacacaaaaaaaaaa	9.52	1	caggaacc	7.58	-1

64 motifs = 41 170 261 0 thresholds = 9.521 ||8.294 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-330	-353	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctttcactc	9.67	-1	aatgagcgagtcag	9.09	1	ctgagtga	8.28	-1
1	-330	-363	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctttcactc	9.67	-1	tcagagcgagagag	9.45	1	ctgagtga	8.28	-1
1	-350	-363	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctctcgctc	12.70	-1	tcagagcgagagag	9.45	1	ctgagtga	8.28	-1
1	-350	-363	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctctcgctc	12.70	-1	tcagagcgagagag	9.45	1	gtgagtga	7.88	-1
2	-295	-323	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctcactcactc	9.58	-1	ctctctctctctct	9.81	-1	gtgagtga	7.88	-1
3	-104	-14	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	ctctcccgctc	10.52	-1	acgcagcgaatttg	9.58	1	gtgagtga	7.88	-1
8	-625	-668	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctcccgctc	10.52	-1	tgagagcgagcgag	9.49	1	gtgagtga	7.88	-1
8	-625	-668	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctcccgctc	10.52	-1	tgagagcgagcgag	9.49	1	gtgagtga	7.88	-1
8	-1098	-1109	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagcgaaagag	10.97	1	agagagggagtgag	8.30	1	gtgagtga	7.88	-1

65 motifs = 163 208 0 0 thresholds = 8.570 ||8.478 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1289	1244	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcaacgcccctggccacgcccccc	10.39	-1	ccgaccccccccc	9.50	-1
2	-520	-444	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcagccaaaacggctccgcccatg	9.63	-1	ctcactcactcga	8.75	-1
4	1346	1361	NM_078946	ll.36039	eve	NaN	NaN	NaN	gcggagcaaccgcctgcgggcggg	9.61	1	ctcgcccgcccgc	11.26	-1
5	915	865	NM_079253	ll.38995	h	NaN	NaN	NaN	gcagccaccacgcgacgcacgcgc	8.76	-1	cccaccagctccc	9.17	-1
6	-4716	-4749	NM_078700	ll.33059	run	NaN	NaN	NaN	gcagcgacgtcggcagcggcttcc	8.90	-1	ctccccatccccc	8.97	-1
8	-538	-627	NM_164966	ll.34569	salm	NaN	NaN	NaN	cacacacgtacgcaaaccggttgc	9.12	1	ctctcccgctcgc	10.65	-1
8	-1032	-972	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggctgccaagggctcgttggcggg	8.57	1	ctcgctctctcga	8.51	-1
8	-1032	-1104	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggctgccaagggctcgttggcggg	8.57	1	ctcactcactccc	10.51	-1
8	-1032	-1114	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggctgccaagggctcgttggcggg	8.57	1	gggagtgagtgag	10.51	1

66 motifs = 202 231 0 0 thresholds = 8.353 ||9.716 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1810	1715	NM_169233	ll.41032	hb	NaN	NaN	NaN	aatgcagctccaaaa	9.38	1	cataaaaa	9.72	-1
2	826	743	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttgctcagcagcatt	8.83	-1	cataaaaa	9.72	-1
4	-1498	-1453	NM_078946	ll.36039	eve	NaN	NaN	NaN	cgatttcgctgcctt	9.51	-1	cataaaaa	9.72	-1
5	-3044	-3107	NM_079253	ll.38995	h	NaN	NaN	NaN	tttcgccgcggccat	8.46	-1	cataaaaa	9.72	-1
8	-4060	-4075	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttatgagcggcaat	9.02	-1	cataaaaa	9.72	-1
10	-4622	-4711	NM_080310	ll.31227	gt	NaN	NaN	NaN	atggcagctaatcaa	10.35	1	cataaaaa	9.72	-1

67 motifs = 64 173 0 0 thresholds = 7.766 ||8.143 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2121	2208	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcagtttc	9.25	-1	cccctgcccccttggcc	9.67	-1
1	-1212	-1188	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttacattttc	9.67	-1	cctctgccaacgcccta	9.40	-1
2	513	457	NM_079463	ll.40287	kni	NaN	NaN	NaN	attttctattttt	8.49	-1	gcgtcccgaggcagcgg	10.83	1
2	409	457	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttactgtttc	9.63	-1	gcgtcccgaggcagcgg	10.83	1
2	-3114	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttttttttttt	8.73	-1	ctgccgccacccgtcgc	8.88	-1
4	-340	-258	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctttcgcattttc	10.14	-1	cttccgccggcggacac	8.84	-1
5	-2125	-2058	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	gtgccgcctctgccgcc	8.37	-1
5	-2125	-2082	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	cctctgccgacgctgac	10.32	1
5	-2138	-2058	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaaaagaaaata	8.49	-1	gtgccgcctctgccgcc	8.37	-1
5	-2138	-2082	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaaaagaaaata	8.49	-1	cctctgccgacgctgac	10.32	1
5	-2147	-2058	NM_079253	ll.38995	h	NaN	NaN	NaN	cttttttgctttt	8.76	1	gtgccgcctctgccgcc	8.37	-1
5	-2147	-2082	NM_079253	ll.38995	h	NaN	NaN	NaN	cttttttgctttt	8.76	1	cctctgccgacgctgac	10.32	1
5	-2156	-2058	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttgtttatttt	8.65	1	gtgccgcctctgccgcc	8.37	-1
5	-2156	-2082	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttgtttatttt	8.65	1	cctctgccgacgctgac	10.32	1
6	-268	-184	NM_078700	ll.33059	run	NaN	NaN	NaN	atttcccattttt	9.97	-1	tacctgccccggcaccc	9.78	-1
6	-646	-702	NM_078700	ll.33059	run	NaN	NaN	NaN	gtttcccattttc	8.33	-1	cacccgcccccgccccc	11.37	-1
6	-4580	-4597	NM_078700	ll.33059	run	NaN	NaN	NaN	cttttccgctttt	10.27	-1	ccgctgccgccgcgctg	8.70	-1
7	-1994	-1960	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	cacctgccacgggccca	9.41	-1
8	4336	4364	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttgctttc	8.27	-1	cagctgcgactgaggga	8.23	-1
8	4336	4242	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttgctttc	8.27	-1	gccagcagcagcagcag	8.42	1
8	1888	1804	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttcttttt	9.97	-1	ttgctgcgcttttcccc	8.14	-1
9	2990	2960	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttcttgccctttc	8.48	-1	ggcagcaaaggcagcca	9.86	1
9	2948	2960	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	cttttgctatttc	9.55	-1	ggcagcaaaggcagcca	9.86	1
10	-379	-360	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttcgcagtttt	10.68	-1	gagggaaagggcagccg	9.36	1

68 motifs = 209 236 0 0 thresholds = 8.525 ||6.975 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1035	-1056	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttatgaatttgcatgtatgttttcttt	12.96	-1	aattatga	8.72	-1
2	-4869	-4852	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttatttttttgctcgcatgcttacttt	11.61	-1	aattatga	8.72	-1
3	389	317	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaattaaaatattccccaagtttgtaa	10.30	1	aattagga	9.10	-1
5	442	530	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttgtttttggctttggatttttttt	13.13	-1	aattaggg	6.97	-1
6	-1094	-1015	NM_078700	ll.33059	run	NaN	NaN	NaN	aaatacaaatataaaggaaaatataat	9.13	1	aattatga	8.72	-1
7	-339	-264	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaacacttaaaaagcatagcactcaaa	10.27	1	aattagga	9.10	-1
7	-1090	-991	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaataaaaaatacaaaaataaatatag	9.85	1	aattagga	9.10	-1
7	-3860	-3820	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaagaagcactaacaaaatttttataa	11.19	1	aattagga	9.10	-1
8	-3674	-3615	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttattttatttcagttgcgtttaattt	12.39	-1	aattaggg	6.97	-1
9	2807	2762	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttactaatttttgtcacctttgcttt	8.54	-1	aattatga	8.72	-1
9	2409	2463	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aaaaaaattaaaaattttaataaaaaa	10.57	1	aattagga	9.10	-1
10	-3347	-3436	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttcgagtacttaacttgtgtctttttt	10.21	-1	gattagga	6.97	-1
13	-4239	-4203	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttttctttattatacttatattaattt	11.77	-1	tcctaatt	9.10	1
13	-4253	-4203	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tcattgaattttatatcagttgtattt	8.56	-1	tcctaatt	9.10	1
13	-4342	-4373	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tcattgaattttatatcagttgtattt	8.56	-1	aattaggg	6.97	-1

69 motifs = 87 267 0 0 thresholds = 9.586 ||6.401 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-420	-450	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcctttttggc	10.78	-1	ccgcttca	6.52	-1
4	-4465	-4448	NM_078946	ll.36039	eve	NaN	NaN	NaN	gccatttggac	10.19	-1	ccgcttaa	6.40	-1
10	-241	-209	NM_080310	ll.31227	gt	NaN	NaN	NaN	gccctttggcc	10.16	-1	ccgcttcg	6.67	-1
12	3866	3845	NM_057311	ll.34669	nub	NaN	NaN	NaN	gcccttttggc	10.32	-1	ccgcttaa	6.40	-1

70 motifs = 64 247 261 0 thresholds = 7.766 ||7.063 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-381	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcattttc	10.07	-1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
2	-336	-316	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctctctcgatttt	9.04	-1	gagagaga	8.19	-1	gtgagtga	7.88	-1
7	-198	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctctctctctttc	8.92	-1	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
7	-198	-186	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctctctctctttc	8.92	-1	gcgagaga	8.05	-1	ttgagtga	8.87	-1
7	-198	-186	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctctctctctttc	8.92	-1	gcgagaga	8.05	-1	ttgagtgc	8.48	-1
8	-1177	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	cttttttaatttc	8.00	-1	gcgagaga	8.05	-1	gtgagtga	7.88	-1

71 motifs = 157 208 261 0 thresholds = 9.170 ||8.478 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
2	-460	-444	-434	NM_079463	ll.40287	kni	NaN	NaN	NaN	cacacacacacaca	14.38	-1	ctcactcactcga	8.75	-1	gtgagtga	7.88	-1
6	-4829	-4749	-4838	NM_078700	ll.33059	run	NaN	NaN	NaN	aaatcactcaaaca	9.65	-1	ctccccatccccc	8.97	-1	ttgagtga	8.87	-1
8	-530	-627	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	aacacacacacaca	13.70	-1	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-530	-627	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	aacacacacacaca	13.70	-1	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-608	-627	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgcgtgtgtgagtg	13.31	1	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-608	-627	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgcgtgtgtgagtg	13.31	1	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-1103	-1114	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggagtgagtgagtg	10.54	1	gggagtgagtgag	10.51	1	gtgagtga	7.88	-1
13	-292	-240	-254	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaaacacccacgca	10.30	-1	ctcactctctcca	8.80	-1	tcactcac	7.88	1

72 motifs = 208 261 0 0 thresholds = 8.478 ||7.876 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	3430	3412	NM_169233	ll.41032	hb	NaN	NaN	NaN	ggcacccaccccc	8.48	-1	ttgagtga	8.87	-1
1	-344	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	cccactctctcgc	10.45	-1	ctgagtga	8.28	-1
1	-344	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cccactctctcgc	10.45	-1	gtgagtga	7.88	-1
2	-444	-434	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctcactcactcga	8.75	-1	gtgagtga	7.88	-1
6	-4749	-4838	NM_078700	ll.33059	run	NaN	NaN	NaN	ctccccatccccc	8.97	-1	ttgagtga	8.87	-1
7	-210	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cccgctctctcgc	10.42	-1	ctgagtgc	7.89	-1
7	-210	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cccgctctctcgc	10.42	-1	ttgagtga	8.87	-1
7	-210	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cccgctctctcgc	10.42	-1	ttgagtgc	8.48	-1
8	-627	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-627	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctcccgctcgc	10.65	-1	gtgagtga	7.88	-1
8	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcactcactccc	10.51	-1	gtgagtga	7.88	-1
8	-1114	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	gggagtgagtgag	10.51	1	gtgagtga	7.88	-1
13	-240	-254	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ctcactctctcca	8.80	-1	tcactcac	7.88	1

73 motifs = 156 201 0 0 thresholds = 9.900 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1640	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcgcagcgacc	11.01	-1	tcgctgcgattggcc	10.54	-1
6	-2510	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgcagcgagc	11.70	-1	ggtccttcgcagcga	10.91	1
7	-4446	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgcagcgagc	11.70	-1	ctcctttcgcagcga	9.95	1
8	-395	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	gttcgcagcga	10.39	1	gaacgttcgcagcga	10.92	1

74 motifs = 147 194 0 0 thresholds = 9.707 ||9.307 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2192	2137	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctgcatggtccccatgcccccac	11.47	-1	ttgcctggctgcac	10.63	-1
1	2052	2137	NM_169233	ll.41032	hb	NaN	NaN	NaN	gggggcggtgttggggtgggggg	12.37	1	ttgcctggctgcac	10.63	-1
5	1293	1247	NM_079253	ll.38995	h	NaN	NaN	NaN	ccccaacctacgccgcctcctcc	11.96	-1	ttggccgccagcca	11.00	-1
5	1281	1247	NM_079253	ll.38995	h	NaN	NaN	NaN	ccccaacctacgccgcctcctcc	11.96	-1	ttggccgccagcca	11.00	-1
6	-2345	-2256	NM_078700	ll.33059	run	NaN	NaN	NaN	ctccccattccttctcctcctcc	15.14	-1	ttggtgggccgcaa	10.30	-1
8	-1098	-1037	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagtgagtgagcgaaagagggcg	11.23	1	tggcaggctgccaa	10.68	1
8	-1098	-1143	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagtgagtgagcgaaagagggcg	11.23	1	gcgctgccgagcga	9.63	1

75 motifs = 146 233 0 0 thresholds = 8.014 ||7.728 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2675	-2668	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttttttttg	11.20	-1	gctaccta	7.73	-1
2	-1279	-1302	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctttttgg	9.63	-1	gctacctg	8.64	-1
3	-1263	-1190	NM_079143	ll.38012	kr	NaN	NaN	NaN	cttttgtttg	9.77	-1	cctaccta	7.98	-1
4	-2211	-2197	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttttttttc	8.68	-1	cctaccta	7.98	-1
8	660	613	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttttttag	8.23	-1	cctaccta	7.98	-1
12	3791	3747	NM_057311	ll.34669	nub	NaN	NaN	NaN	tgtttgttgg	8.38	-1	tctaccta	7.77	-1

76 motifs = 64 194 0 0 thresholds = 7.766 ||9.307 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2121	2137	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttgcagtttc	9.25	-1	ttgcctggctgcac	10.63	-1
2	-1847	-1901	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctcattttttc	8.06	-1	ttgctgggcggcaa	10.96	-1
2	-1932	-1901	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttattatttt	9.10	-1	ttgctgggcggcaa	10.96	-1
5	-2125	-2027	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	ttgatcggctgcca	10.54	-1
7	-1994	-1976	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	tcgttgggcggccc	9.45	-1
8	-1177	-1143	NM_164966	ll.34569	salm	NaN	NaN	NaN	cttttttaatttc	8.00	-1	gcgctgccgagcga	9.63	1
9	2491	2577	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttttgccttttt	11.17	-1	tcgctggccgccaa	9.97	1

77 motifs = 63 64 64 0 thresholds = 9.074 ||7.766 ||7.766 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	3458	3553	3508	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	ttttcctcttttt	10.13	-1	cttttattttttt	9.53	-1
1	3458	3553	3498	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	ttttcctcttttt	10.13	-1	aaaaaaataaaag	9.53	1
1	3458	3508	3553	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	cttttattttttt	9.53	-1	ttttcctcttttt	10.13	-1
1	3458	3508	3498	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	cttttattttttt	9.53	-1	aaaaaaataaaag	9.53	1
1	3458	3498	3553	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	aaaaaaataaaag	9.53	1	ttttcctcttttt	10.13	-1
1	3458	3498	3508	NM_169233	ll.41032	hb	NaN	NaN	NaN	gccacccctgac	9.13	-1	aaaaaaataaaag	9.53	1	cttttattttttt	9.53	-1
5	-2067	-2125	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ctctcgttttttt	8.94	-1	aaaaaagaaaata	8.49	-1
5	-2067	-2125	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ctctcgttttttt	8.94	-1	cttttttgctttt	8.76	1
5	-2067	-2125	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ctctcgttttttt	8.94	-1	ttttgtttatttt	8.65	1
5	-2067	-2138	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	aaaaaagaaaata	8.49	-1	ctctcgttttttt	8.94	-1
5	-2067	-2138	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	aaaaaagaaaata	8.49	-1	cttttttgctttt	8.76	1
5	-2067	-2138	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	aaaaaagaaaata	8.49	-1	ttttgtttatttt	8.65	1
5	-2067	-2147	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	cttttttgctttt	8.76	1	ctctcgttttttt	8.94	-1
5	-2067	-2147	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	cttttttgctttt	8.76	1	aaaaaagaaaata	8.49	-1
5	-2067	-2147	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	cttttttgctttt	8.76	1	ttttgtttatttt	8.65	1
5	-2067	-2156	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ttttgtttatttt	8.65	1	ctctcgttttttt	8.94	-1
5	-2067	-2156	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ttttgtttatttt	8.65	1	aaaaaagaaaata	8.49	-1
5	-2067	-2156	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgcc	12.56	-1	ttttgtttatttt	8.65	1	cttttttgctttt	8.76	1
5	-2085	-2125	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ctctcgttttttt	8.94	-1	aaaaaagaaaata	8.49	-1
5	-2085	-2125	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ctctcgttttttt	8.94	-1	cttttttgctttt	8.76	1
5	-2085	-2125	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ctctcgttttttt	8.94	-1	ttttgtttatttt	8.65	1
5	-2085	-2138	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	aaaaaagaaaata	8.49	-1	ctctcgttttttt	8.94	-1
5	-2085	-2138	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	aaaaaagaaaata	8.49	-1	cttttttgctttt	8.76	1
5	-2085	-2138	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	aaaaaagaaaata	8.49	-1	ttttgtttatttt	8.65	1
5	-2085	-2147	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	cttttttgctttt	8.76	1	ctctcgttttttt	8.94	-1
5	-2085	-2147	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	cttttttgctttt	8.76	1	aaaaaagaaaata	8.49	-1
5	-2085	-2147	-2156	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	cttttttgctttt	8.76	1	ttttgtttatttt	8.65	1
5	-2085	-2156	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ttttgtttatttt	8.65	1	ctctcgttttttt	8.94	-1
5	-2085	-2156	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ttttgtttatttt	8.65	1	aaaaaagaaaata	8.49	-1
5	-2085	-2156	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgcctctgcc	9.07	1	ttttgtttatttt	8.65	1	cttttttgctttt	8.76	1
7	-553	-565	-603	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gacagcactgcc	10.43	-1	ctcttcttttttc	8.25	-1	ttttctctctttt	11.33	-1
7	-553	-603	-565	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gacagcactgcc	10.43	-1	ttttctctctttt	11.33	-1	ctcttcttttttc	8.25	-1
8	4415	4364	4336	NM_164966	ll.34569	salm	NaN	NaN	NaN	gttgccgctgcc	9.13	-1	ctctctccttttc	9.03	-1	tttttttgctttc	8.27	-1
8	4415	4336	4364	NM_164966	ll.34569	salm	NaN	NaN	NaN	gttgccgctgcc	9.13	-1	tttttttgctttc	8.27	-1	ctctctccttttc	9.03	-1

78 motifs = 201 203 0 0 thresholds = 8.916 ||9.319 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-168	-105	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcgctgccgcagagc	10.35	-1	caaaggccggcggag	12.05	1
6	-2525	-2495	NM_078700	ll.33059	run	NaN	NaN	NaN	ggtccttcgcagcga	10.91	1	caaaaggcagcgctg	10.84	1
6	-4599	-4564	NM_078700	ll.33059	run	NaN	NaN	NaN	ccgctgccgccgcgc	9.61	-1	cactgctgccttttg	12.08	-1
7	238	215	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgctgccgctctgc	9.77	-1	ctctgccgccgtttc	10.36	-1
8	-2672	-2756	NM_164966	ll.34569	salm	NaN	NaN	NaN	agcgagacgcagcga	8.92	1	aaaatgagcgcagag	10.20	1

79 motifs = 214 218 0 0 thresholds = 9.417 ||9.163 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1188	1248	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttgcccgctc	10.40	-1	caacccccaaccgaccccccccc	12.80	-1
4	1659	1705	NM_078946	ll.36039	eve	NaN	NaN	NaN	attggccgctc	9.98	-1	gggcgcggggtggctgagagcag	10.97	1
6	-678	-703	NM_078700	ll.33059	run	NaN	NaN	NaN	tttggcggccc	10.92	-1	ctacctgtaccacccgcccccgc	9.17	-1
6	-4532	-4584	NM_078700	ll.33059	run	NaN	NaN	NaN	attggcggcac	9.98	-1	cgccgcgctgcccgcttttccgc	10.24	-1
9	1549	1516	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	attgccggctc	9.42	-1	gggggtggcggcggaggcggtgg	9.26	1

80 motifs = 196 205 0 0 thresholds = 9.196 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1673	1715	NM_078946	ll.36039	eve	NaN	NaN	NaN	gctcccagcgacggcggc	10.04	-1	ctgcagagcgcagc	10.88	1
4	-163	-175	NM_078946	ll.36039	eve	NaN	NaN	NaN	gctgccgcagagcctcgc	10.14	-1	ccgcagagcctcgc	9.17	1
6	-6	-52	NM_078700	ll.33059	run	NaN	NaN	NaN	actgccaacgatcgcagc	11.54	-1	aggcggcgagcagc	9.12	1
6	-63	-52	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgtcgacagaggcggc	9.56	1	aggcggcgagcagc	9.12	1
7	-1894	-1906	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gctgagtacctgggcagc	10.33	1	ccgctgtgagtggc	10.37	1
12	-4450	-4531	NM_057311	ll.34669	nub	NaN	NaN	NaN	gctgccgctgcttgcgga	11.06	-1	gcaaatcacagcag	9.44	-1

81 motifs = 196 260 0 0 thresholds = 9.196 ||6.901 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2505	2593	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctgccagatagcacagc	10.06	-1	acaattag	6.90	-1
2	-2055	-2026	NM_079463	ll.40287	kni	NaN	NaN	NaN	gtgggtacctaagccagc	9.89	1	gcgattag	8.17	-1
4	1673	1600	NM_078946	ll.36039	eve	NaN	NaN	NaN	gctcccagcgacggcggc	10.04	-1	acgattag	8.76	-1
6	-1856	-1771	NM_078700	ll.33059	run	NaN	NaN	NaN	tcggcgatcgcaggcagc	12.35	1	gcgattag	8.17	-1

82 motifs = 10 177 196 0 thresholds = 5.100 ||8.297 ||9.196 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2443	2437	2505	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttct	5.10	-1	attttgtgtggtgca	8.59	-1	gctgccagatagcacagc	10.06	-1
4	-2410	-2404	-2331	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttct	5.10	-1	tttttgtttcgacaa	9.30	-1	gcagccctcgattcccgc	10.85	-1
4	-2414	-2404	-2331	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttct	5.10	-1	tttttgtttcgacaa	9.30	-1	gcagccctcgattcccgc	10.85	-1
5	-2136	-2142	-2055	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	gccgcctctgccgccgac	10.09	-1
5	-2136	-2142	-2079	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	tctgccgacgctgaccgc	10.68	1
5	-2136	-2142	-2170	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	gccgccaacgttttccga	10.04	-1
5	-2152	-2142	-2055	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	gccgcctctgccgccgac	10.09	-1
5	-2152	-2142	-2079	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	tctgccgacgctgaccgc	10.68	1
5	-2152	-2142	-2170	NM_079253	ll.38995	h	NaN	NaN	NaN	tttct	5.10	-1	tttcttttttgttta	8.73	-1	gccgccaacgttttccga	10.04	-1
8	1882	1894	1801	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttct	5.10	-1	tctttttttagctta	8.76	-1	tttgtgacctatggcagc	10.70	1

83 motifs = 176 203 0 0 thresholds = 9.450 ||9.319 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2115	-2141	NM_169233	ll.41032	hb	NaN	NaN	NaN	atcaaaacacaaaaaaaagt	11.60	1	caaaggtcagcagaa	12.14	1
2	-2435	-2483	NM_079463	ll.40287	kni	NaN	NaN	NaN	cttttttattgtgttttttt	10.39	-1	aaaaagtcagcgcag	10.54	1
6	-4491	-4564	NM_078700	ll.33059	run	NaN	NaN	NaN	agtatattttcaaatatatt	9.86	-1	cactgctgccttttg	12.08	-1
7	-463	-538	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaaaaaagtcaaatataaat	12.05	1	cagtgctgtcttttt	9.56	-1
8	-101	-193	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaataaaccaaaaaaaaa	10.01	1	caaaggccagcggta	12.09	1

84 motifs = 247 261 0 0 thresholds = 7.063 ||7.876 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-342	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgagaga	8.05	-1	ctgagtga	8.28	-1
1	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgagaga	8.05	-1	gtgagtga	7.88	-1
2	-316	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	gagagaga	8.19	-1	gtgagtga	7.88	-1
3	-300	-220	NM_079143	ll.38012	kr	NaN	NaN	NaN	gctagagg	7.42	-1	ttgagtga	8.87	-1
7	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
7	-186	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgagaga	8.05	-1	ttgagtga	8.87	-1
7	-186	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgagaga	8.05	-1	ttgagtgc	8.48	-1
7	-204	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagaga	8.19	1	ctgagtgc	7.89	-1
7	-204	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagaga	8.19	1	ttgagtga	8.87	-1
7	-204	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagaga	8.19	1	ttgagtgc	8.48	-1
8	-653	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagagg	8.89	-1	gtgagtga	7.88	-1
8	-653	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagagg	8.89	-1	gtgagtga	7.88	-1
8	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagaga	8.05	-1	gtgagtga	7.88	-1
8	-2697	-2791	NM_164966	ll.34569	salm	NaN	NaN	NaN	gagagaga	8.19	-1	gtgagtga	7.88	-1
11	126	102	NM_164546	ll.33583	odd	NaN	NaN	NaN	gagacagg	7.06	-1	ttgagtga	8.87	-1

85 motifs = 180 196 0 0 thresholds = 8.225 ||9.196 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2443	2505	NM_169233	ll.41032	hb	NaN	NaN	NaN	tgtgtggtgcactttct	8.36	-1	gctgccagatagcacagc	10.06	-1
2	-2452	-2532	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttgtgcgttacttttt	9.23	-1	gctgccatttccgacagc	9.84	-1
4	-2377	-2331	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttgttgctctttttat	11.26	-1	gcagccctcgattcccgc	10.85	-1
4	-2386	-2331	NM_078946	ll.36039	eve	NaN	NaN	NaN	aaaaaactcataaaaag	10.17	-1	gcagccctcgattcccgc	10.85	-1
5	-2136	-2055	NM_079253	ll.38995	h	NaN	NaN	NaN	cgtttttttttcttttt	10.57	-1	gccgcctctgccgccgac	10.09	-1
5	-2136	-2079	NM_079253	ll.38995	h	NaN	NaN	NaN	cgtttttttttcttttt	10.57	-1	tctgccgacgctgaccgc	10.68	1
5	-2136	-2170	NM_079253	ll.38995	h	NaN	NaN	NaN	cgtttttttttcttttt	10.57	-1	gccgccaacgttttccga	10.04	-1
8	1890	1801	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgtttttttcttttttt	12.27	-1	tttgtgacctatggcagc	10.70	1
8	1729	1801	NM_164966	ll.34569	salm	NaN	NaN	NaN	attttgttgtacttttt	9.24	-1	tttgtgacctatggcagc	10.70	1
9	5398	5357	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttaatgtattttt	10.81	-1	ttcgggttctggggcagc	9.77	1

86 motifs = 64 231 270 0 thresholds = 7.766 ||9.716 ||7.035 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
2	-1280	-1246	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctttctttttg	7.83	-1	cataaaaa	9.72	-1	taaccctttt	10.31	-1
2	-1280	-1246	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctttctttttg	7.83	-1	cataaaaa	9.72	-1	taaccctttt	10.31	-1
3	-3810	-3852	-3757	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttttttgctttt	9.20	-1	cataaaaa	9.72	-1	taatccgttt	8.27	-1
3	-3819	-3852	-3757	NM_079143	ll.38012	kr	NaN	NaN	NaN	aaaagaaggaaaa	10.02	-1	cataaaaa	9.72	-1	taatccgttt	8.27	-1
6	-2879	-2842	-2826	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttcccactttt	11.08	-1	cataaaaa	9.72	-1	aaaagggttg	8.65	1
8	-3982	-4075	-4009	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttccccctttt	10.83	-1	cataaaaa	9.72	-1	taatcctttt	8.87	-1

87 motifs = 45 101 0 0 thresholds = 9.535 ||8.962 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-3146	-3109	NM_079463	ll.40287	kni	NaN	NaN	NaN	gccgccaccc	10.07	-1	ttttttttttttactat	9.19	-1
5	-2052	-2132	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcccgcc	10.26	-1	gtttttttttctttttt	9.12	-1
6	1271	1215	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgccaacc	9.98	-1	atttttgcttatccttt	10.58	-1
7	-1973	-2024	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcggcccacc	9.76	-1	tgttttattatttgttt	9.46	-1
9	6785	6692	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gctgcccacc	9.91	-1	attattaataattcatt	10.43	-1

88 motifs = 150 269 0 0 thresholds = 10.260 ||8.553 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2046	1972	NM_169233	ll.41032	hb	NaN	NaN	NaN	cccccttttt	10.65	-1	cacacaaaaaa	8.68	-1
2	-1670	-1733	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccaccttttt	10.84	-1	accataaaaaa	9.59	-1
2	-1703	-1733	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccaccgtttt	10.45	-1	accataaaaaa	9.59	-1
6	-2878	-2841	NM_078700	ll.33059	run	NaN	NaN	NaN	cccacttttt	10.46	-1	cccataaaaaa	9.62	-1
8	-3983	-4076	NM_164966	ll.34569	salm	NaN	NaN	NaN	cccccttttt	10.65	-1	ctcataaaaaa	9.64	-1

89 motifs = 41 241 0 0 thresholds = 9.521 ||8.467 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-478	-496	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctctcactt	10.10	-1	n	NaN	NaN
8	-846	-861	NM_164966	ll.34569	salm	NaN	NaN	NaN	ccctctctctc	10.96	-1	n	NaN	NaN
10	-314	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctc	9.61	-1	cgaaaggg	9.07	-1
10	-314	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctc	9.61	-1	ggaaaggg	9.07	-1
12	-2181	-2195	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctctttcgctc	10.97	-1	cgaaaggg	9.07	-1
13	-242	-333	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ctcactcactc	9.58	-1	ccctttcc	9.07	1
13	-2106	-2033	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccctctcgctc	11.16	-1	n	NaN	NaN

90 motifs = 141 170 190 0 thresholds = 9.669 ||8.294 ||7.708 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-342	-353	-334	NM_169233	ll.41032	hb	NaN	NaN	NaN	actcacccactc	10.75	-1	aatgagcgagtcag	9.09	1	tttcactcactc	7.87	-1
1	-342	-353	-360	NM_169233	ll.41032	hb	NaN	NaN	NaN	actcacccactc	10.75	-1	aatgagcgagtcag	9.09	1	gagcgagagagt	11.00	1
1	-342	-363	-334	NM_169233	ll.41032	hb	NaN	NaN	NaN	actcacccactc	10.75	-1	tcagagcgagagag	9.45	1	tttcactcactc	7.87	-1
2	-209	-184	-175	NM_079463	ll.40287	kni	NaN	NaN	NaN	acgcacacatgc	10.27	-1	ctcgatcgctctct	9.96	-1	tcgctctctcac	8.38	-1
8	-1102	-1093	-1049	NM_164966	ll.34569	salm	NaN	NaN	NaN	actcactcactc	9.67	-1	agagagggagtgag	8.30	1	tctcacttgctc	8.07	-1
8	-1102	-1109	-1049	NM_164966	ll.34569	salm	NaN	NaN	NaN	actcactcactc	9.67	-1	agagagggagtgag	8.30	1	tctcacttgctc	8.07	-1
8	-1102	-1109	-1094	NM_164966	ll.34569	salm	NaN	NaN	NaN	actcactcactc	9.67	-1	agagagggagtgag	8.30	1	gctcactcactc	8.03	-1
12	-220	-158	-149	NM_057311	ll.34669	nub	NaN	NaN	NaN	actcacacactc	12.00	-1	agagagcgagagcg	12.16	1	gctcgctctcgc	8.96	-1
13	-1949	-1863	-1929	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	gggtgagtgtgt	10.12	1	cactttctctctct	9.09	-1	gagagagcgcgc	9.91	1

91 motifs = 74 124 0 0 thresholds = 9.608 ||8.419 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1563	1584	NM_169233	ll.41032	hb	NaN	NaN	NaN	gacgctcgcag	9.81	-1	tgtttttttt	11.58	-1
9	6498	6572	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gacgctcgccg	10.09	-1	tgtttctttt	10.33	-1
11	180	88	NM_164546	ll.33583	odd	NaN	NaN	NaN	gccgctctccg	11.52	-1	tgttgctgtt	8.48	-1
12	2452	2540	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgctcgctg	11.09	-1	tctttttttt	10.40	-1

92 motifs = 170 240 0 0 thresholds = 8.294 ||7.209 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	856	929	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcacagcgatcgtg	8.29	1	gttagtgt	7.37	-1
6	-288	-327	NM_078700	ll.33059	run	NaN	NaN	NaN	acacagagagaccg	9.07	1	gttagtgt	7.37	-1
6	-423	-327	NM_078700	ll.33059	run	NaN	NaN	NaN	cactctctctctct	9.81	-1	gttagtgt	7.37	-1
8	-2592	-2556	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgctgtcgctgtgt	11.28	-1	gttagtgt	7.37	-1
11	-2361	-2404	NM_164546	ll.33583	odd	NaN	NaN	NaN	agtcagccagtgcg	8.64	1	gttactat	7.30	-1
12	-158	-178	NM_057311	ll.34669	nub	NaN	NaN	NaN	agagagcgagagcg	12.16	1	gttagttt	8.30	-1

93 motifs = 95 122 0 0 thresholds = 10.183 ||9.269 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-60	-69	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcggccagtagg	11.18	-1	cctactggccg	9.93	-1
5	-4451	-4460	NM_079253	ll.38995	h	NaN	NaN	NaN	tcggccaggagg	11.56	-1	cctcctggccg	10.23	-1
6	452	443	NM_078700	ll.33059	run	NaN	NaN	NaN	tcggccagcagc	11.80	-1	gctgctggccg	10.38	-1
8	4249	4240	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcggccagcagc	11.80	-1	gctgctggccg	10.38	-1
12	-1717	-1684	NM_057311	ll.34669	nub	NaN	NaN	NaN	tcggccagcatc	11.01	-1	ccgactgcccg	9.73	-1

94 motifs = 89 256 0 0 thresholds = 9.266 ||6.882 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2621	2589	NM_169233	ll.41032	hb	NaN	NaN	NaN	cacaattttt	9.66	-1	ggctaatt	9.00	-1
2	-3595	-3603	NM_079463	ll.40287	kni	NaN	NaN	NaN	aattattttt	9.80	-1	ggttagtt	6.88	-1
7	2050	2115	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aacaaatttt	10.05	-1	ggttaagt	7.41	-1
7	-1151	-1171	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aataattttt	11.04	-1	ggttaatt	8.22	-1
7	-1782	-1760	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaccattttt	9.59	-1	ggttaatt	8.22	-1
8	-1694	-1760	NM_164966	ll.34569	salm	NaN	NaN	NaN	aataattttt	11.04	-1	ggttaagt	7.41	-1
11	-843	-779	NM_164546	ll.33583	odd	NaN	NaN	NaN	aatcaatttt	9.50	-1	ggctaatt	9.00	-1
12	-1380	-1298	NM_057311	ll.34669	nub	NaN	NaN	NaN	aacaattttt	10.59	-1	ggctagtt	7.66	-1

95 motifs = 178 182 0 0 thresholds = 8.704 ||9.101 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-1859	-1837	NM_078946	ll.36039	eve	NaN	NaN	NaN	gggtcccggcgatccggttcgc	10.46	1	ctcgccggcgatccttgtcgccc	13.01	-1
4	-1909	-1837	NM_078946	ll.36039	eve	NaN	NaN	NaN	gggtcccggcgatccggttcgc	10.46	1	ctcgccggcgatccttgtcgccc	13.01	-1
5	903	832	NM_079253	ll.38995	h	NaN	NaN	NaN	gcccaccagctccccagattcg	9.86	-1	ccatccattcatgagtgccgccc	9.83	-1
5	873	832	NM_079253	ll.38995	h	NaN	NaN	NaN	gcccaccagctccccagattcg	9.86	-1	ccatccattcatgagtgccgccc	9.83	-1
6	-135	-123	NM_078700	ll.33059	run	NaN	NaN	NaN	gccaaccacaccaccataccgc	10.34	-1	gggcgggaaagagacggcgctag	14.24	1
8	-1145	-1108	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctgcgctgccgagcgagatggc	10.65	1	ctcactccctctctctcgctcac	9.18	-1
9	1517	1531	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gccaccaccgcctccgccgcca	9.28	-1	gagcgggcggaacaggtggagcc	9.28	1

96 motifs = 76 100 212 0 thresholds = 8.075 ||9.655 ||8.953 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-2261	-2324	-2226	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaacagccaaaaaagaga	9.42	1	gcgaaaccaatttg	9.97	1	gaaaaaacctgaagtaaaatggcaaa	10.61	1
5	663	749	676	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaaatacgaaaaaagaa	12.42	1	cgaatttatctcgc	10.66	-1	aaaaacactctgagccagaccaaaaa	10.39	1
7	-603	-585	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aaaagagagaaaataaag	9.28	1	gcgcacaaaaggcg	11.06	1	tttcaaccataaatttgaaatttttc	10.15	-1
8	-2176	-2223	-2246	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcccgttttctgcatttt	8.87	-1	cgtctttctttcgc	10.51	-1	ttttcaacatcctttcctcatttttt	11.89	-1

97 motifs = 64 205 0 0 thresholds = 7.766 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2676	-2708	NM_169233	ll.41032	hb	NaN	NaN	NaN	gtttttttttttt	8.02	-1	tagcagagatttgc	9.20	1
4	-340	-384	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctttcgcattttc	10.14	-1	cggcagggattcgc	10.02	1
5	-439	-513	NM_079253	ll.38995	h	NaN	NaN	NaN	ttcttcctttttg	7.93	-1	gcagagcccagcag	9.94	-1
7	-1994	-1906	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	ccgctgtgagtggc	10.37	1
8	1964	2016	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtctttctttttt	8.37	-1	tcgcagcgatttgc	10.53	1
8	1950	2016	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtctttctttttt	8.37	-1	tcgcagcgatttgc	10.53	1

98 motifs = 122 171 0 0 thresholds = 9.269 ||8.997 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2222	2135	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcccctgcccg	10.45	-1	cggttgcctggctgc	10.58	-1
6	443	452	NM_078700	ll.33059	run	NaN	NaN	NaN	gctgctggccg	10.38	-1	cactcggccagcagc	9.37	-1
7	1177	1089	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ccagctgcccg	9.87	-1	gctgctcgccaaaag	10.83	1
8	4240	4249	NM_164966	ll.34569	salm	NaN	NaN	NaN	gctgctggccg	10.38	-1	cagtcggccagcagc	9.37	-1
12	-1684	-1714	NM_057311	ll.34669	nub	NaN	NaN	NaN	ccgactgcccg	9.73	-1	gctggccgacaaaac	9.87	1

99 motifs = 84 229 0 0 thresholds = 11.278 ||8.103 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-4051	-4138	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaaaatattttaa	12.23	1	aaaagtaa	8.82	-1
1	-4077	-4138	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaaaatattttaa	12.23	1	aaaagtaa	8.82	-1
2	479	423	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaatcacaattttca	11.28	1	aaaactaa	8.25	-1
2	-3596	-3635	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaaaaataattttga	12.71	1	aaaagtaa	8.82	-1
7	-2228	-2196	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcaaaatagtgtttt	11.30	-1	aaaagtaa	8.82	-1
8	3690	3727	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaaagaactttaa	11.96	1	aaaagtaa	8.82	-1
12	4611	4561	NM_057311	ll.34669	nub	NaN	NaN	NaN	tcaaatttgtgtttt	11.94	-1	aaaagtaa	8.82	-1

100 motifs = 67 76 223 0 thresholds = 8.587 ||8.075 ||9.064 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2035	2024	2051	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccattttcatgatatttt	9.93	-1	ttccatttttgccatttt	10.44	-1	gggggcggtgttggggtggg	12.25	1
1	1976	2024	2051	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcaacaaaaacatttttt	9.91	-1	ttccatttttgccatttt	10.44	-1	gggggcggtgttggggtggg	12.25	1
2	-3120	-3107	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccatcaaaggtatttttt	9.82	-1	ttttttttttttactata	8.26	-1	ctcctgccgccacccgtcgc	11.67	-1
8	-111	-96	-155	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctaaaatttagttatttt	10.49	-1	ttttttttggtttatttt	8.13	-1	cgtttcccactgccgacggc	10.97	-1
8	-127	-96	-155	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctaaaatttagttatttt	10.49	-1	ttttttttggtttatttt	8.13	-1	cgtttcccactgccgacggc	10.97	-1
8	-2202	-2176	-2108	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttaatacgtattattttt	9.09	-1	tcccgttttctgcatttt	8.87	-1	ccctgtcccacccccttgtc	10.38	-1
12	3178	3188	3266	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttatttatgttatttttt	11.80	-1	tatttttttcggctactt	9.63	-1	cagcttccgccgccgccgac	12.01	-1

101 motifs = 163 253 0 0 thresholds = 8.570 ||7.840 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1289	1242	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcaacgcccctggccacgcccccc	10.39	-1	ggaggggg	9.13	-1
6	-2321	-2386	NM_078700	ll.33059	run	NaN	NaN	NaN	ccgccacctcggaaaactcgcggg	10.24	1	ggtagggg	7.97	-1
6	-2362	-2386	NM_078700	ll.33059	run	NaN	NaN	NaN	cctaccagaatggccatgctcccc	9.21	-1	ggtagggg	7.97	-1
6	-4716	-4746	NM_078700	ll.33059	run	NaN	NaN	NaN	gcagcgacgtcggcagcggcttcc	8.90	-1	gggagggg	7.84	-1
7	217	139	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gctgccgctctgccgccgtttctg	12.79	-1	ggaggggg	9.13	-1
8	-1032	-1002	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggctgccaagggctcgttggcggg	8.57	1	gggagggg	7.84	-1
9	-1961	-1937	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gggctgcgtgggcgtggtggtggg	10.76	1	ggtggggg	8.26	-1

102 motifs = 85 100 0 0 thresholds = 9.914 ||9.655 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3420	-3466	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaaactaaatatttt	13.09	1	gcgcacaaaaaacg	11.76	1
3	-4691	-4727	NM_079143	ll.38012	kr	NaN	NaN	NaN	aacagatttatttttct	11.26	-1	gcgcattaaatttg	10.70	1
7	-657	-585	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ataaatttgaaattttt	10.98	1	gcgcacaaaaggcg	11.06	1
8	2782	2838	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaaaaaaaaactctt	12.50	1	cgatttagttgcgc	11.20	-1

103 motifs = 36 93 113 0 thresholds = 9.062 ||10.453 ||9.538 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
7	-642	-570	-602	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	taaatttgaaattttt	11.43	-1	ttttttcggcca	11.15	-1	ttttctctcttt	10.37	-1
12	-3476	-3507	-3498	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaaaaatacactttt	9.26	-1	ttttttatgcaa	11.01	-1	ttttccgctttt	10.46	-1
13	-874	-919	-855	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	taaaacttattatttt	10.41	-1	ttgcccataaaa	11.70	1	aaagaaagaaaa	9.64	1

104 motifs = 233 270 0 0 thresholds = 7.728 ||7.035 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1444	-1417	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	taatcctttc	8.21	-1
1	-3439	-3481	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	caaccctttc	7.99	-1
2	-1302	-1248	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	taactctttt	8.30	-1
2	-1302	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	taaccctttt	10.31	-1
2	-1302	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	taaccctttt	10.31	-1
2	-1302	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	caaccctttt	8.65	-1
5	-4620	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	taatcctttc	8.21	-1
5	-4620	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	taatcctttc	8.21	-1
9	-1480	-1421	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gctaccta	7.73	-1	tgatcctttt	7.26	-1
10	-224	-252	NM_080310	ll.31227	gt	NaN	NaN	NaN	cctacctg	8.89	-1	tcaccccttt	7.63	-1
10	-2208	-2216	NM_080310	ll.31227	gt	NaN	NaN	NaN	tctacctg	8.68	-1	caacccgttc	7.40	-1

105 motifs = 182 261 0 0 thresholds = 9.101 ||7.876 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-350	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactctctcgctctgactcgctc	12.67	-1	ctgagtga	8.28	-1
1	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactctctcgctctgactcgctc	12.67	-1	gtgagtga	7.88	-1
2	-326	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	gagagagagagagagactgagcg	10.48	1	gtgagtga	7.88	-1
3	-705	-611	NM_079143	ll.38012	kr	NaN	NaN	NaN	ctctcgctgtttcattttcgccc	12.58	-1	ctgagtga	8.28	-1
7	-204	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagagcgggaaagagagagag	10.20	1	ctgagtgc	7.89	-1
7	-204	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagagcgggaaagagagagag	10.20	1	ttgagtga	8.87	-1
7	-204	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagagcgggaaagagagagag	10.20	1	ttgagtgc	8.48	-1
8	-371	-342	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcgatttctctcagtgccgcac	10.70	-1	ctgagtgc	7.89	-1
8	-1108	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcactccctctctctcgctcac	9.18	-1	gtgagtga	7.88	-1

106 motifs = 45 98 0 0 thresholds = 9.535 ||8.718 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
6	1271	1290	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgccaacc	9.98	-1	ccccaccatcccc	9.16	-1
7	-1973	-1930	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcggcccacc	9.76	-1	ctgcccttgcccc	9.67	-1
12	3548	3451	NM_057311	ll.34669	nub	NaN	NaN	NaN	gcggccaccc	9.54	-1	ctaccccttcccc	11.03	-1
12	3487	3451	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgccaccc	10.07	-1	ctaccccttcccc	11.03	-1
13	-2215	-2209	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggggggcggc	10.39	1	cggcatgggggag	8.85	1

107 motifs = 9 174 0 0 thresholds = 7.550 ||8.500 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-2211	-2234	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttttttttc	7.68	-1	gcccgctcga	8.50	-1
5	-2153	-2055	NM_079253	ll.38995	h	NaN	NaN	NaN	tttttttttc	7.68	-1	gcccgcccgc	9.80	-1
8	1943	1995	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttttc	7.68	-1	gcccgctggc	9.71	-1
12	-2125	-2161	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttttatgg	8.21	-1	gctcgcccgc	8.70	-1

108 motifs = 9 102 180 0 thresholds = 7.550 ||10.493 ||8.225 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-2506	-2496	-2457	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttttttttc	7.68	-1	tttttgaaaaaaaaaaa	13.00	1	cttttggataggtttct	9.10	-1
5	420	398	432	NM_079253	ll.38995	h	NaN	NaN	NaN	tttttttttc	7.68	-1	tctttcgagaaaaataa	10.65	1	ccaaagccaaaaacaaa	9.74	1
8	-93	-114	-41	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttttttgg	7.62	-1	tttttccctcacaaaaa	11.79	1	aaaaacacactcacaaa	10.27	1
8	-93	-114	-102	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttttttgg	7.62	-1	tttttccctcacaaaaa	11.79	1	caaaaataaaccaaaaa	10.85	1
12	-1348	-1282	-1368	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttttatgc	8.61	-1	tttttatatgggaaaga	11.96	-1	attttttatgatttttt	9.87	-1
13	-824	-848	-858	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccataaaaaa	8.21	1	tttttataaaagaaaga	12.27	-1	ataaaagaaagaaaacg	9.97	1

109 motifs = 194 207 0 0 thresholds = 9.307 ||7.225 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2137	2215	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttgcctggctgcac	10.63	-1	ccccatgcccccacccc	10.85	-1
1	2137	2062	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttgcctggctgcac	10.63	-1	cccaccccaacaccgcc	7.66	-1
5	1247	1275	NM_079253	ll.38995	h	NaN	NaN	NaN	ttggccgccagcca	11.00	-1	ccccaacctacgccgcc	10.98	-1
6	1261	1293	NM_078700	ll.33059	run	NaN	NaN	NaN	ttgccgccaaccaa	10.49	1	cccccaccatcccccca	10.79	-1
7	-1976	-1910	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgttgggcggccc	9.45	-1	ccacatcccataacccc	7.97	-1
7	-1976	-1932	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgttgggcggccc	9.45	-1	ccacctgccacgggccc	12.09	-1
7	-1976	-1961	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgttgggcggccc	9.45	-1	ccacctgccacgggccc	12.09	-1
8	-1037	-1023	NM_164966	ll.34569	salm	NaN	NaN	NaN	tggcaggctgccaa	10.68	1	tggcaggctgccaaggg	7.38	1

110 motifs = 101 217 252 0 thresholds = 8.962 ||10.381 ||7.303 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
3	-2573	-2597	-2656	NM_079143	ll.38012	kr	NaN	NaN	NaN	atgtttgatattttttt	9.03	-1	aaaaaaataatgtttgatatttt	10.54	1	agggaaat	7.43	-1
3	-2682	-2597	-2656	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttattgaaaacttttt	10.79	-1	aaaaaaataatgtttgatatttt	10.54	1	agggaaat	7.43	-1
8	1715	1705	1726	NM_164966	ll.34569	salm	NaN	NaN	NaN	attatttaattattttt	11.76	-1	taattatttaattatttttattt	13.14	-1	agggaaaa	7.30	-1
8	-99	-135	-113	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaataaaccaaaaaa	12.11	1	aagtaactaaaatttagttattt	13.91	-1	agggaaaa	7.30	-1
9	4467	4524	4493	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aaattatagggaaaaat	9.65	1	aaatatatttaatttattaaaaa	10.66	1	agggaaaa	7.30	-1
9	4467	4524	4480	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aaattatagggaaaaat	9.65	1	aaatatatttaatttattaaaaa	10.66	1	agggaaaa	7.30	1
12	3189	3176	3130	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttatttatgttatttt	11.69	-1	attttatttatttatgttatttt	10.59	-1	agggaaag	7.65	-1

111 motifs = 196 212 0 0 thresholds = 9.196 ||8.953 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-2532	-2435	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctgccatttccgacagc	9.84	-1	gttacttttttattgtgttttttttt	10.93	-1
4	-2331	-2377	NM_078946	ll.36039	eve	NaN	NaN	NaN	gcagccctcgattcccgc	10.85	-1	tttgttgctctttttatgagtttttt	12.04	-1
5	-2055	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgcctctgccgccgac	10.09	-1	tttttttttcttttttgtttattttc	14.83	-1
5	-2079	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	tctgccgacgctgaccgc	10.68	1	tttttttttcttttttgtttattttc	14.83	-1
5	-2170	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gccgccaacgttttccga	10.04	-1	tttttttttcttttttgtttattttc	14.83	-1
8	1801	1899	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttgtgacctatggcagc	10.70	1	tttttttctttttttagcttactttg	10.10	-1
8	1801	1728	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttgtgacctatggcagc	10.70	1	tttatgcgattttgttgtactttttt	11.69	-1
12	3269	3180	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgccgccgacgacgac	9.60	-1	ttttattttatttatttatgttattt	10.33	-1

112 motifs = 146 163 0 0 thresholds = 8.014 ||8.570 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1349	1289	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttttttttc	8.68	-1	gcaacgcccctggccacgcccccc	10.39	-1
4	-2211	-2146	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttttttttc	8.68	-1	gtgcaccttcggcggaaccgcagg	10.61	1
5	991	915	NM_079253	ll.38995	h	NaN	NaN	NaN	tttttttttc	8.68	-1	gcagccaccacgcgacgcacgcgc	8.76	-1
6	-4038	-3939	NM_078700	ll.33059	run	NaN	NaN	NaN	tttttgttgg	9.46	-1	gagaggcggagccacgatcggcgc	9.07	1
8	-425	-490	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctcttgtttg	9.07	-1	cacacacgtacgcaaaccggttgc	9.12	1

113 motifs = 71 268 0 0 thresholds = 9.884 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
7	-3044	-3095	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gattgcactcgcattggccata	12.27	1	ttttatgg	6.31	-1
9	2549	2626	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ggcacccatttgcgtggccata	13.25	1	ttttatgg	6.31	-1
11	-2554	-2571	NM_164546	ll.33583	odd	NaN	NaN	NaN	tatggccatcgttcctgctttc	11.97	-1	ttttatgg	6.31	-1
13	-4669	-4733	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	gtttgccatgcacacagccccc	11.68	-1	ttttatgt	6.34	-1

114 motifs = 64 225 0 0 thresholds = 7.766 ||9.484 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-3552	-3615	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttcttccattttc	9.75	-1	cgcacagtcagcgc	11.55	1
6	-4580	-4600	NM_078700	ll.33059	run	NaN	NaN	NaN	cttttccgctttt	10.27	-1	ccgctgccgccgcg	9.63	-1
7	-565	-584	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctcttcttttttc	8.25	-1	cgcacaaaaggcgg	10.28	1
7	-603	-584	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttctctctttt	11.33	-1	cgcacaaaaggcgg	10.28	1
8	2782	2837	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtttttttttttt	8.02	-1	cgcacgagaagcgg	12.12	1

115 motifs = 85 220 0 0 thresholds = 9.914 ||8.923 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3420	-3466	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaaaaactaaatatttt	13.09	1	gcgcacaaaaaacg	10.98	1
3	-4563	-4601	NM_079143	ll.38012	kr	NaN	NaN	NaN	taaaaaataaatagctt	12.36	1	cgatttttgtcctc	9.44	-1
3	-4691	-4601	NM_079143	ll.38012	kr	NaN	NaN	NaN	aacagatttatttttct	11.26	-1	cgatttttgtcctc	9.44	-1
7	-657	-585	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ataaatttgaaattttt	10.98	1	gcgcacaaaaggcg	11.02	1
8	2782	2836	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaaaaaaaaaaactctt	12.50	1	gcgcacgagaagcg	11.55	1

116 motifs = 69 178 0 0 thresholds = 9.888 ||8.704 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-99	-60	NM_079463	ll.40287	kni	NaN	NaN	NaN	cgcactcaca	9.89	-1	gccaaagagttcggccagtagg	8.81	-1
5	-332	-261	NM_079253	ll.38995	h	NaN	NaN	NaN	cgcacacaca	10.99	-1	cggtcgtgtggctcgcgctcgc	10.00	1
8	-2370	-2333	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgcacacaca	10.99	-1	gctctctgcttggcctggtggc	12.09	1
8	-2370	-2359	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgcacacaca	10.99	-1	gctctctgcttggcctggtggc	12.09	1
12	-191	-244	NM_057311	ll.34669	nub	NaN	NaN	NaN	aacacacaca	10.74	-1	gcccacgagcgaaccacaaacg	8.71	-1
12	-217	-244	NM_057311	ll.34669	nub	NaN	NaN	NaN	cacactcaca	11.34	-1	gcccacgagcgaaccacaaacg	8.71	-1
12	-288	-244	NM_057311	ll.34669	nub	NaN	NaN	NaN	cacacacaca	12.44	-1	gcccacgagcgaaccacaaacg	8.71	-1

117 motifs = 170 188 0 0 thresholds = 8.294 ||8.817 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-2044	-2034	NM_079463	ll.40287	kni	NaN	NaN	NaN	agccagcgatttcg	9.64	1	ccagcgattt	10.14	-1
3	-14	-4	NM_079143	ll.38012	kr	NaN	NaN	NaN	acgcagcgaatttg	9.58	1	gcagcgaatt	9.65	-1
4	-1499	-1454	NM_078946	ll.36039	eve	NaN	NaN	NaN	cgatttcgctgcct	10.76	-1	gcagcgattt	10.43	-1
8	-668	-684	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgagagcgagcgag	9.49	1	acagcaattt	9.03	-1
8	-779	-684	NM_164966	ll.34569	salm	NaN	NaN	NaN	aaacagcgactgcg	11.09	1	acagcaattt	9.03	-1

118 motifs = 190 247 261 0 thresholds = 7.708 ||7.063 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-334	-342	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttcactcactc	7.87	-1	gcgagaga	8.05	-1	ctgagtga	8.28	-1
1	-334	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttcactcactc	7.87	-1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
1	-360	-342	-266	NM_169233	ll.41032	hb	NaN	NaN	NaN	gagcgagagagt	11.00	1	gcgagaga	8.05	-1	ctgagtga	8.28	-1
1	-360	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	gagcgagagagt	11.00	1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
2	-295	-316	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	actcactcactc	8.15	-1	gagagaga	8.19	-1	gtgagtga	7.88	-1
7	-194	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
7	-194	-186	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gcgagaga	8.05	-1	ttgagtga	8.87	-1
7	-194	-186	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gcgagaga	8.05	-1	ttgagtgc	8.48	-1
7	-194	-204	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gagagaga	8.19	1	ctgagtgc	7.89	-1
7	-194	-204	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gagagaga	8.19	1	ttgagtga	8.87	-1
7	-194	-204	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tctctctctttc	10.18	-1	gagagaga	8.19	1	ttgagtgc	8.48	-1
7	-208	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gaaagagagaga	10.18	1	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
7	-208	-186	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gaaagagagaga	10.18	1	gcgagaga	8.05	-1	ttgagtga	8.87	-1
7	-208	-186	-259	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gaaagagagaga	10.18	1	gcgagaga	8.05	-1	ttgagtgc	8.48	-1
8	-665	-653	-571	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcgctcgctctc	8.36	-1	gcgagagg	8.89	-1	gtgagtga	7.88	-1
8	-665	-653	-595	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcgctcgctctc	8.36	-1	gcgagagg	8.89	-1	gtgagtga	7.88	-1
8	-1049	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	tctcacttgctc	8.07	-1	gcgagaga	8.05	-1	gtgagtga	7.88	-1
8	-2707	-2697	-2791	NM_164966	ll.34569	salm	NaN	NaN	NaN	tctctccctctc	9.11	-1	gagagaga	8.19	-1	gtgagtga	7.88	-1

119 motifs = 180 225 0 0 thresholds = 8.225 ||9.484 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-2445	-2537	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttgtggcctctttttg	9.03	-1	cgcacaaagagcgg	11.20	1
5	-778	-801	NM_079253	ll.38995	h	NaN	NaN	NaN	cttgtgatcttgtttac	9.11	-1	ccgcctagcgtgcg	10.61	-1
7	-342	-322	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	agtgttttatgctttgt	8.36	-1	agcactcaaagcgg	10.14	1
8	-2720	-2794	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttgtgcgatggttttt	9.26	-1	gcgctgttggtgag	9.48	-1

120 motifs = 81 227 0 0 thresholds = 9.693 ||8.990 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
5	1238	1261	NM_079253	ll.38995	h	NaN	NaN	NaN	tggctggcggc	11.05	-1	ccagccagtcaatccgctccc	10.85	-1
6	-4690	-4725	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgctgccgac	10.40	-1	agccgctgccgacgtcgctgc	9.40	1
6	-4702	-4725	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgctgccgac	10.40	-1	agccgctgccgacgtcgctgc	9.40	1
7	-4423	-4434	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgctgccgac	10.40	-1	gcagcgagcccatcatcgccc	13.53	-1
11	-436	-338	NM_164546	ll.33583	odd	NaN	NaN	NaN	tggctgcctgc	10.59	-1	gcagcagcagcagcaacggca	14.13	-1
11	-436	-356	NM_164546	ll.33583	odd	NaN	NaN	NaN	tggctgcctgc	10.59	-1	gcagcaacatcggcagcagca	13.82	1
11	-436	-532	NM_164546	ll.33583	odd	NaN	NaN	NaN	tggctgcctgc	10.59	-1	tgcagctgctgctcctgctga	10.15	1
13	-1961	-1977	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tggctgccggc	11.16	-1	tgccgattggctgccggctgc	10.48	1

121 motifs = 187 201 0 0 thresholds = 9.141 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1665	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	cgctgcgattg	10.02	1	tcgctgcgattggcc	10.54	-1
5	-230	-242	NM_079253	ll.38995	h	NaN	NaN	NaN	gtctcgcagcg	9.52	-1	cgcgtctcgcagcgg	9.87	1
6	-2513	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	ccttcgcagcg	9.42	-1	ggtccttcgcagcga	10.91	1
7	-4449	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctttcgcagcg	10.02	-1	ctcctttcgcagcga	9.95	1
8	2022	2010	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggttcgcagcg	9.80	-1	gttggttcgcagcga	9.31	1
8	-398	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgttcgcagcg	10.67	-1	gaacgttcgcagcga	10.92	1
8	-2598	-2672	NM_164966	ll.34569	salm	NaN	NaN	NaN	cacacacagcg	9.19	-1	agcgagacgcagcga	8.92	1

122 motifs = 45 64 0 0 thresholds = 9.535 ||7.766 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-3146	-3114	NM_079463	ll.40287	kni	NaN	NaN	NaN	gccgccaccc	10.07	-1	atttttttttttt	8.73	-1
5	-2052	-2125	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcccgcc	10.26	-1	ctctcgttttttt	8.94	-1
5	-2052	-2138	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcccgcc	10.26	-1	aaaaaagaaaata	8.49	-1
5	-2052	-2147	NM_079253	ll.38995	h	NaN	NaN	NaN	gcggcccgcc	10.26	-1	cttttttgctttt	8.76	1
7	-1973	-1994	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcggcccacc	9.76	-1	gttttacattttt	8.49	-1
10	-1351	-1272	NM_080310	ll.31227	gt	NaN	NaN	NaN	gccgccagcc	10.48	-1	cttttcttatttc	8.44	-1
12	3548	3585	NM_057311	ll.34669	nub	NaN	NaN	NaN	gcggccaccc	9.54	-1	attttacagtttt	8.38	-1
12	3487	3585	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgccaccc	10.07	-1	attttacagtttt	8.38	-1

123 motifs = 150 268 0 0 thresholds = 10.260 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-1670	-1725	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccaccttttt	10.84	-1	ttttatgg	6.31	-1
2	-1703	-1725	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccaccgtttt	10.45	-1	ttttatgg	6.31	-1
5	-3835	-3741	NM_079253	ll.38995	h	NaN	NaN	NaN	cccccttttt	10.65	-1	ttttatgt	6.34	-1
6	-2878	-2849	NM_078700	ll.33059	run	NaN	NaN	NaN	cccacttttt	10.46	-1	ttttatgg	6.31	-1
8	-3983	-4068	NM_164966	ll.34569	salm	NaN	NaN	NaN	cccccttttt	10.65	-1	ttttatga	6.70	-1

124 motifs = 76 213 0 0 thresholds = 8.075 ||9.703 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-4396	-4425	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttggttttcagatcttt	10.84	-1	gatttggtttgggtt	11.06	1
3	-701	-615	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttcattttcgccctgtt	11.24	-1	gagtgagtttttgtt	10.82	1
3	-2200	-2170	NM_079143	ll.38012	kr	NaN	NaN	NaN	ataaataaaaaaaaccaa	8.39	1	aacagaaacccaatc	11.90	-1
3	-2215	-2170	NM_079143	ll.38012	kr	NaN	NaN	NaN	ataaataaaaaaaaccaa	8.39	1	aacagaaacccaatc	11.90	-1
4	613	592	NM_078946	ll.36039	eve	NaN	NaN	NaN	aagtcataaaaacacata	8.28	1	atcccaatcccaatc	11.82	-1
6	-4882	-4901	NM_078700	ll.33059	run	NaN	NaN	NaN	aacagaaggaaacccgaa	9.36	1	acccgaaacacactc	10.90	-1
6	-4925	-4901	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaaaaaaagaaaaccaa	8.56	1	acccgaaacacactc	10.90	-1
6	-4941	-4901	NM_078700	ll.33059	run	NaN	NaN	NaN	taccttttcctttttttt	8.49	-1	acccgaaacacactc	10.90	-1
7	1695	1760	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	aagttaaagaaaaagata	10.29	1	gtttaagatttaggt	9.73	1
8	-96	-31	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttttttggtttatttt	8.13	-1	accaaaaacacactc	10.58	-1

125 motifs = 64 177 244 0 thresholds = 7.766 ||8.297 ||7.578 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-476	-535	-464	NM_169233	ll.41032	hb	NaN	NaN	NaN	ctctctcactttt	9.50	-1	ttgcccaaaaaacaa	8.78	1	cagaaatc	8.46	-1
7	1476	1524	1426	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttgccatttt	7.77	-1	tttttgtttttagta	9.50	-1	cggaaacc	7.97	-1
12	-3237	-3247	-3261	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttccttttttt	10.73	-1	tttttgtgttggaaa	8.90	-1	cagaaatc	8.46	-1
13	-3100	-3117	-3045	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaaaaaaggaaaa	10.73	1	gacacaaaaaaaaaa	9.52	1	caggaacc	7.58	-1
13	-3108	-3117	-3045	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaaaaaaggaaaa	10.73	1	gacacaaaaaaaaaa	9.52	1	caggaacc	7.58	-1

126 motifs = 256 264 0 0 thresholds = 6.882 ||7.927 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3811	-3732	NM_169233	ll.41032	hb	NaN	NaN	NaN	ggttaatt	8.22	-1	aacgggtt	8.11	-1
1	-3811	-3873	NM_169233	ll.41032	hb	NaN	NaN	NaN	ggttaatt	8.22	-1	aaagggtt	9.05	-1
4	715	738	NM_078946	ll.36039	eve	NaN	NaN	NaN	ggctaagt	8.19	-1	aacgggtt	8.11	-1
10	-3421	-3407	NM_080310	ll.31227	gt	NaN	NaN	NaN	ggctaatt	9.00	-1	aaaggatt	8.87	-1
11	-779	-867	NM_164546	ll.33583	odd	NaN	NaN	NaN	ggctaatt	9.00	-1	aaagggtt	9.05	-1
11	-979	-958	NM_164546	ll.33583	odd	NaN	NaN	NaN	ggttagtt	6.88	-1	aaaggatt	8.87	-1
12	-1734	-1815	NM_057311	ll.34669	nub	NaN	NaN	NaN	ggctaatt	9.00	-1	aaaggatt	8.87	-1
12	-1860	-1815	NM_057311	ll.34669	nub	NaN	NaN	NaN	ggttaatt	8.22	-1	aaaggatt	8.87	-1

127 motifs = 146 259 0 0 thresholds = 8.014 ||7.743 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-2819	-2748	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttgttttg	8.02	-1	cgaatccg	7.83	-1
4	-2030	-2076	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttgttttg	8.02	-1	cgaaatcg	8.25	1
4	-2030	-2082	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttgttttg	8.02	-1	cgatttcg	8.25	-1
6	126	105	NM_078700	ll.33059	run	NaN	NaN	NaN	cgtttgtttg	8.70	-1	cgaaatcg	8.25	1
9	-3831	-3925	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tgttttttgg	9.27	-1	cgcattcg	8.11	-1
11	-4959	-4922	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttttag	8.23	-1	cgaaatcg	8.25	1
11	-4959	-4928	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttttag	8.23	-1	cgatttcg	8.25	-1
12	3076	3038	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttgttttg	8.02	-1	cgcattcg	8.11	-1

128 motifs = 207 220 0 0 thresholds = 7.225 ||8.923 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1672	-1642	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccacacagcacccgccc	8.75	-1	gcgaacgctaatcg	10.58	1
5	-843	-800	NM_079253	ll.38995	h	NaN	NaN	NaN	ccaccacccactgcccg	11.37	-1	cgcctagcgtgcgc	10.43	-1
6	-4755	-4734	NM_078700	ll.33059	run	NaN	NaN	NaN	gggggagggggatgggg	12.16	1	gcggtcggaagccg	10.04	1
8	2779	2836	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcacgcccccccccccc	8.54	-1	gcgcacgagaagcg	11.55	1

129 motifs = 9 10 25 0 thresholds = 7.550 ||5.100 ||7.749 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
5	-1724	-1772	-1693	NM_079253	ll.38995	h	NaN	NaN	NaN	ttttttactc	7.67	-1	agaaa	5.10	1	ctataaaaacactgc	9.18	1
8	365	393	336	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttttc	7.68	-1	tttct	5.10	-1	ggctgccttttatat	9.14	-1
12	-3505	-3567	-3597	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttttatgc	8.61	-1	agaaa	5.10	1	ctataaaactcccga	7.96	1
13	-824	-765	-836	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccataaaaaa	8.21	1	agaaa	5.10	1	gtatataagcggcca	9.20	1
13	-824	-849	-836	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccataaaaaa	8.21	1	agaaa	5.10	1	gtatataagcggcca	9.20	1
13	-824	-853	-836	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ccataaaaaa	8.21	1	agaaa	5.10	1	gtatataagcggcca	9.20	1

Questions? --> kreiman@mit.edu

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