Location of motif pairs/triplets/quadruplets in each transcript within the cluster set

t=transcript number

p=position of last motif with respect to ATG for each motif

affy=affymetrix probe id

nm=refseq accession number

ug=unigene accession number

chr=chromosome

pos=chromosomal position

strand=strand

Drosophila Mellanogaster

1 motifs = 8 233 264 0 thresholds = 5.654 ||7.728 ||7.927 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-1418	-1444	-1424	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttaatccttt	5.75	-1	gctacctg	8.64	-1	aaaggatt	8.87	-1
1	-3480	-3439	-3474	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcaacccttt	6.12	-1	gctacctg	8.64	-1	aaagggtt	9.05	-1
2	-1313	-1302	-1337	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttaacccttt	6.94	-1	gctacctg	8.64	-1	aacccttt	9.05	1
2	-1343	-1302	-1337	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttaacccttt	6.94	-1	gctacctg	8.64	-1	aacccttt	9.05	1
5	-4640	-4620	-4600	NM_079253	ll.38995	h	NaN	NaN	NaN	gaaacccgtt	6.22	-1	cctacctg	8.89	-1	aaaggatt	8.87	-1
5	-4640	-4620	-4646	NM_079253	ll.38995	h	NaN	NaN	NaN	gaaacccgtt	6.22	-1	cctacctg	8.89	-1	aacgggtt	8.11	-1
10	-2217	-2208	-2223	NM_080310	ll.31227	gt	NaN	NaN	NaN	gcaacccgtt	6.32	-1	tctacctg	8.68	-1	aacgggtt	8.11	-1

2 motifs = 100 268 0 0 thresholds = 9.655 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3466	-3424	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgcacaaaaaacg	11.76	1	ttttatga	6.70	-1
2	665	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	gcgcgaaaaaaatg	10.54	1	ttttatga	6.70	-1
3	-392	-411	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgaagataattcg	10.77	1	ttttatga	6.70	-1
3	-392	-439	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgaagataattcg	10.77	1	ttttatgt	6.34	-1
4	1163	1155	NM_078946	ll.36039	eve	NaN	NaN	NaN	gcgcaaataattcg	11.78	1	ttttatga	6.70	-1
10	-2050	-2078	NM_080310	ll.31227	gt	NaN	NaN	NaN	cgtttttttttcgc	11.80	-1	ttttatgg	6.31	-1

3 motifs = 64 215 0 0 thresholds = 7.766 ||10.281 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-1847	-1813	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctcattttttc	8.06	-1	ctaattaccccgggaaa	13.46	-1
2	-2360	-2383	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttgtcattttt	8.75	-1	tttcccgggaaaatttg	13.52	1
4	-340	-348	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctttcgcattttc	10.14	-1	cggcccgggaaaatgcg	11.39	1
5	-439	-408	NM_079253	ll.38995	h	NaN	NaN	NaN	ttcttcctttttg	7.93	-1	cccattcccgcgagcca	10.49	-1
8	-852	-862	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctctctctctttc	8.92	-1	tggcccgagagaaagag	10.90	1

4 motifs = 233 264 270 0 thresholds = 7.728 ||7.927 ||7.035 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-1444	-1424	-1417	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	aaaggatt	8.87	-1	taatcctttc	8.21	-1
1	-3439	-3474	-3481	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	aaagggtt	9.05	-1	caaccctttc	7.99	-1
2	-1302	-1307	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aaagggtt	9.05	-1	taaccctttt	10.31	-1
2	-1302	-1307	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aaagggtt	9.05	-1	taaccctttt	10.31	-1
2	-1302	-1337	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aacccttt	9.05	1	taaccctttt	10.31	-1
2	-1302	-1337	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aacccttt	9.05	1	taaccctttt	10.31	-1
5	-4620	-4578	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaagggtt	9.05	-1	taatcctttc	8.21	-1
5	-4620	-4578	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaagggtt	9.05	-1	taatcctttc	8.21	-1
5	-4620	-4600	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaaggatt	8.87	-1	taatcctttc	8.21	-1
5	-4620	-4600	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaaggatt	8.87	-1	taatcctttc	8.21	-1
10	-2208	-2223	-2216	NM_080310	ll.31227	gt	NaN	NaN	NaN	tctacctg	8.68	-1	aacgggtt	8.11	-1	caacccgttc	7.40	-1

5 motifs = 87 267 0 0 thresholds = 9.586 ||6.401 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-420	-450	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcctttttggc	10.78	-1	ccgcttca	6.52	-1
4	-4465	-4448	NM_078946	ll.36039	eve	NaN	NaN	NaN	gccatttggac	10.19	-1	ccgcttaa	6.40	-1
10	-241	-209	NM_080310	ll.31227	gt	NaN	NaN	NaN	gccctttggcc	10.16	-1	ccgcttcg	6.67	-1
12	3866	3845	NM_057311	ll.34669	nub	NaN	NaN	NaN	gcccttttggc	10.32	-1	ccgcttaa	6.40	-1

6 motifs = 64 173 0 0 thresholds = 7.766 ||8.143 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1212	-1188	NM_169233	ll.41032	hb	NaN	NaN	NaN	cttttacattttc	9.67	-1	cctctgccaacgcccta	9.40	-1
2	409	457	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttactgtttc	9.63	-1	gcgtcccgaggcagcgg	10.83	1
2	-3114	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	atttttttttttt	8.73	-1	ctgccgccacccgtcgc	8.88	-1
5	-2125	-2082	NM_079253	ll.38995	h	NaN	NaN	NaN	ctctcgttttttt	8.94	-1	cctctgccgacgctgac	10.32	1
6	-4580	-4597	NM_078700	ll.33059	run	NaN	NaN	NaN	cttttccgctttt	10.27	-1	ccgctgccgccgcgctg	8.70	-1
7	-1994	-1960	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gttttacattttt	8.49	-1	cacctgccacgggccca	9.41	-1
8	4336	4364	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttttttgctttc	8.27	-1	cagctgcgactgaggga	8.23	-1
9	2990	2960	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttcttgccctttc	8.48	-1	ggcagcaaaggcagcca	9.86	1
9	2948	2960	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	cttttgctatttc	9.55	-1	ggcagcaaaggcagcca	9.86	1
10	-379	-360	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttcgcagtttt	10.68	-1	gagggaaagggcagccg	9.36	1

7 motifs = 95 135 0 0 thresholds = 10.183 ||9.852 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1148	1160	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaagc	11.02	-1	gcttttggccgatc	11.92	-1
1	-391	-403	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaatg	10.55	-1	attcggccaaaatg	11.07	1
1	-2915	-2903	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaacatc	10.33	-1	gatgttggccgaac	11.23	-1
1	-4239	-4251	NM_169233	ll.41032	hb	NaN	NaN	NaN	tcggccaaaggg	10.40	-1	gttcggccaaaggg	12.05	1
2	-60	-72	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcggccagtagg	11.18	-1	gttcggccagtagg	12.16	1
4	61	49	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcggccagtagg	11.18	-1	ggtcggccagtagg	11.15	1
5	-4451	-4463	NM_079253	ll.38995	h	NaN	NaN	NaN	tcggccaggagg	11.56	-1	gctcggccaggagg	11.03	1
6	452	440	NM_078700	ll.33059	run	NaN	NaN	NaN	tcggccagcagc	11.80	-1	actcggccagcagc	11.59	1
6	-2617	-2629	NM_078700	ll.33059	run	NaN	NaN	NaN	n	NaN	NaN	aatcggccatcggc	10.11	1
8	4249	4237	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcggccagcagc	11.80	-1	agtcggccagcagc	11.30	1
10	-2206	-2218	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcggccatcagg	11.43	-1	gttcggccatcagg	11.53	1

8 motifs = 102 243 0 0 thresholds = 10.493 ||8.185 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-917	-881	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttattcaaaatgaaata	11.44	-1	gaaacccc	8.68	-1
6	-1487	-1513	NM_078700	ll.33059	run	NaN	NaN	NaN	ttattttgaatgaaaca	12.58	-1	gaaatccc	8.19	-1
8	-2995	-2955	NM_164966	ll.34569	salm	NaN	NaN	NaN	tatttttaatagaataa	11.42	1	aaaatccc	8.29	-1
9	2494	2506	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttattaagtgttaaaaa	10.82	-1	aaaacccc	8.79	-1
12	2099	2079	NM_057311	ll.34669	nub	NaN	NaN	NaN	tttttttacgttaaaca	11.42	-1	aaaatccc	8.29	-1

9 motifs = 144 201 0 0 thresholds = 9.481 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2976	2987	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttcgcagctcgc	11.14	-1	tcgctgctaagctgg	9.28	-1
4	1640	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	atcgcagcgacc	10.33	-1	tcgctgcgattggcc	10.54	-1
6	-2510	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	ggtccttcgcagcga	10.91	1
7	-4446	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	ctcctttcgcagcga	9.95	1
8	2025	2010	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcgatt	10.61	-1	gttggttcgcagcga	9.31	1
8	-395	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcgagc	12.12	-1	gaacgttcgcagcga	10.92	1

10 motifs = 72 205 0 0 thresholds = 9.948 ||9.121 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-418	-384	NM_078946	ll.36039	eve	NaN	NaN	NaN	gatcggcgctttgt	10.14	-1	cggcagggattcgc	10.02	1
6	-2496	-2519	NM_078700	ll.33059	run	NaN	NaN	NaN	acaaaaggcagcgc	10.50	1	tcgcagcgagcggc	11.77	1
8	2028	2016	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcgcagcgatttgc	10.25	-1	tcgcagcgatttgc	10.53	1
10	-4990	-4978	NM_080310	ll.31227	gt	NaN	NaN	NaN	gcaaatcgctgcaa	10.95	1	gcaaatcgctgcaa	10.44	-1

11 motifs = 35 177 0 0 thresholds = 10.187 ||8.297 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	552	595	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttagggaaca	9.84	-1
4	-1985	-2025	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttgttttggccga	10.38	-1
5	957	985	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	ttggccagaaaaaaa	12.01	1
6	-3069	-3081	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttatggcc	11.48	-1	tattttttgggaaca	8.75	-1
9	2319	2279	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttggct	10.39	-1	taaaaaaaacaaaaa	8.60	1
10	-2076	-2046	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttttcgctga	8.85	-1

12 motifs = 189 220 0 0 thresholds = 8.353 ||8.923 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1672	-1642	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccacacagcacccgccc	10.23	-1	gcgaacgctaatcg	10.58	1
1	-3436	-3466	NM_169233	ll.41032	hb	NaN	NaN	NaN	cagccagctacctgccc	8.41	-1	gcgcacaaaaaacg	10.98	1
4	-2483	-2464	NM_078946	ll.36039	eve	NaN	NaN	NaN	ggacagtcggctcgtgg	8.35	1	cggctcgtggacgc	9.54	-1
5	-811	-800	NM_079253	ll.38995	h	NaN	NaN	NaN	ccactgcccgatcgccc	8.92	-1	cgcctagcgtgcgc	10.43	-1
5	-843	-800	NM_079253	ll.38995	h	NaN	NaN	NaN	caaccacccaaccaccc	11.81	1	cgcctagcgtgcgc	10.43	-1
6	-4754	-4734	NM_078700	ll.33059	run	NaN	NaN	NaN	gggggagggggatgggg	11.46	1	gcggtcggaagccg	10.04	1

13 motifs = 178 182 0 0 thresholds = 8.704 ||9.101 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-1859	-1837	NM_078946	ll.36039	eve	NaN	NaN	NaN	gggtcccggcgatccggttcgc	10.46	1	ctcgccggcgatccttgtcgccc	13.01	-1
5	873	832	NM_079253	ll.38995	h	NaN	NaN	NaN	gcccaccagctccccagattcg	9.86	-1	ccatccattcatgagtgccgccc	9.83	-1
6	-135	-123	NM_078700	ll.33059	run	NaN	NaN	NaN	gccaaccacaccaccataccgc	10.34	-1	gggcgggaaagagacggcgctag	14.24	1
8	-1145	-1108	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctgcgctgccgagcgagatggc	10.65	1	ctcactccctctctctcgctcac	9.18	-1
9	1517	1531	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gccaccaccgcctccgccgcca	9.28	-1	gagcgggcggaacaggtggagcc	9.28	1

14 motifs = 35 212 0 0 thresholds = 10.187 ||8.953 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-439	-396	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggca	10.66	-1	caaaatgcagcgccagaaaatgcaaa	10.71	1
1	-2258	-2226	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttggct	10.39	-1	gaaaaaacctgaagtaaaatggcaaa	10.61	1
3	-1139	-1133	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttatggca	11.06	-1	aaaaatctacataaaaccatttaaaa	12.57	1
4	-1985	-2015	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtttatggcc	10.61	-1	ttttttgttttggccgaccgattttt	10.45	-1
5	957	998	NM_079253	ll.38995	h	NaN	NaN	NaN	gtttttggcc	10.20	-1	aaaaactgacttcatgcgagtccaaa	9.58	1
9	2222	2262	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttatggca	11.06	-1	aaaaactttaagcgatttaaaaaaaa	11.43	1
10	-2076	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttttttttcgctgaatctggttttt	11.80	-1
11	-2569	-2575	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttatggcc	11.48	-1	tttcaggtctttccaaattatttttt	11.91	-1
13	-826	-860	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggccataaaa	11.48	1	tttattttataaaacttattattttt	11.92	-1

15 motifs = 88 192 0 0 thresholds = 9.584 ||9.983 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1666	1673	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctcccagcga	9.70	-1	cgctcccagcgacggcggc	11.51	-1
6	-13	-62	NM_078700	ll.33059	run	NaN	NaN	NaN	ctgccaacga	10.82	-1	cacaaacgccggcagagcc	13.10	-1
6	-4676	-4636	NM_078700	ll.33059	run	NaN	NaN	NaN	ctgccagcgc	10.43	-1	gccgcagccgcagtcgcag	10.57	1
6	-4676	-4724	NM_078700	ll.33059	run	NaN	NaN	NaN	ctgccagcgc	10.43	-1	gccgctgccgacgtcgctg	11.75	1
7	234	200	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctgccagcgc	10.43	-1	cgctctgccgccgtttctg	11.69	1
8	4309	4261	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctgccagcga	11.43	-1	cagcagcagcagcagcacc	11.29	-1

16 motifs = 264 264 0 0 thresholds = 7.927 ||7.927 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3691	-3732	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacccgtt	8.11	1	aacgggtt	8.11	-1
1	-3732	-3691	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	aacccgtt	8.11	1
2	-1307	-1337	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1
2	-1337	-1307	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1
2	-1337	-1371	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1
2	-1371	-1337	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1
5	-4578	-4600	NM_079253	ll.38995	h	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaggatt	8.87	-1
5	-4600	-4578	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	aaagggtt	9.05	-1
5	-4600	-4646	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	aacgggtt	8.11	-1
5	-4646	-4600	NM_079253	ll.38995	h	NaN	NaN	NaN	aacgggtt	8.11	-1	aaaggatt	8.87	-1
10	-1086	-1115	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1
10	-1115	-1086	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1
11	-4638	-4672	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1
11	-4672	-4638	NM_164546	ll.33583	odd	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1

17 motifs = 68 194 0 0 thresholds = 9.027 ||9.307 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-1927	-1901	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttttttattatttttgaa	11.07	-1	ttgctgggcggcaa	10.96	-1
6	1244	1261	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttgatacacatatccaa	9.31	-1	ttgccgccaaccaa	10.49	1
7	-2013	-1976	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atttgttttgattatcaaa	10.82	-1	tcgttgggcggccc	9.45	-1
8	-1186	-1143	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttataaaccgaaattaaaa	10.48	1	gcgctgccgagcga	9.63	1

18 motifs = 83 83 241 0 thresholds = 7.183 ||7.183 ||8.467 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
3	-2018	-2026	-2004	NM_079143	ll.38012	kr	NaN	NaN	NaN	cttttttccgctt	8.85	-1	agggggaaaagcg	7.58	-1	n	NaN	NaN
3	-2026	-2018	-2004	NM_079143	ll.38012	kr	NaN	NaN	NaN	agggggaaaagcg	7.58	-1	cttttttccgctt	8.85	-1	n	NaN	NaN
10	-291	-314	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctgtcccgctc	9.00	-1	ctctctgtctcac	7.23	-1	cgaaaggg	9.07	-1
10	-314	-291	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ctctgtcccgctc	9.00	-1	cgaaaggg	9.07	-1
10	-314	-362	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ccctttccctcat	7.36	-1	cgaaaggg	9.07	-1
10	-314	-362	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctctctgtctcac	7.23	-1	ccctttccctcat	7.36	-1	ggaaaggg	9.07	-1
10	-362	-314	-330	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctctgtctcac	7.23	-1	cgaaaggg	9.07	-1
10	-362	-314	-351	NM_080310	ll.31227	gt	NaN	NaN	NaN	ccctttccctcat	7.36	-1	ctctctgtctcac	7.23	-1	ggaaaggg	9.07	-1
12	-2181	-2206	-2195	NM_057311	ll.34669	nub	NaN	NaN	NaN	atctctttcgctc	7.81	-1	ccctttcgcactc	10.49	-1	cgaaaggg	9.07	-1
12	-2206	-2181	-2195	NM_057311	ll.34669	nub	NaN	NaN	NaN	ccctttcgcactc	10.49	-1	atctctttcgctc	7.81	-1	cgaaaggg	9.07	-1
13	-4929	-4939	-4974	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aggtgcaaaagag	7.94	1	aggtgcaaaagag	7.94	1	n	NaN	NaN
13	-4939	-4929	-4974	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aggtgcaaaagag	7.94	1	aggtgcaaaagag	7.94	1	n	NaN	NaN

19 motifs = 180 258 0 0 thresholds = 8.225 ||7.840 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	601	557	NM_169233	ll.41032	hb	NaN	NaN	NaN	ataaatcgtaaaaaaca	10.31	1	ttttttac	8.11	-1
2	-1560	-1591	NM_079463	ll.40287	kni	NaN	NaN	NaN	ctttttgacttttttac	10.03	-1	ttttttac	8.11	-1
2	-2452	-2432	NM_079463	ll.40287	kni	NaN	NaN	NaN	tttgtgcgttacttttt	9.23	-1	ttttttac	8.11	-1
3	-1022	-984	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttttattatatttcc	10.66	-1	ttttttac	8.11	-1
3	-1022	-998	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttttattatatttcc	10.66	-1	ctttttac	9.53	1
3	-3167	-3142	NM_079143	ll.38012	kr	NaN	NaN	NaN	cttttgcataatttttt	9.14	-1	ttttttac	8.11	-1
6	-4959	-4936	NM_078700	ll.33059	run	NaN	NaN	NaN	tttttttttggttttct	12.03	-1	ctttttac	9.53	-1
8	2626	2598	NM_164966	ll.34569	salm	NaN	NaN	NaN	ataaaccaaagcacaat	9.26	1	ttttttac	8.11	-1
9	2365	2399	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gaaaagtttagaaaaaa	8.66	1	ttttttac	8.11	-1
11	-2794	-2773	NM_164546	ll.33583	odd	NaN	NaN	NaN	attttgtgattttttgc	9.81	-1	ttttttac	8.11	-1
12	-1622	-1596	NM_057311	ll.34669	nub	NaN	NaN	NaN	tgttttttatgatttac	9.72	-1	ctttttac	9.53	-1
12	-3745	-3788	NM_057311	ll.34669	nub	NaN	NaN	NaN	gaaaaaattcacaaaca	9.72	1	ttttttac	8.11	-1
12	-3819	-3788	NM_057311	ll.34669	nub	NaN	NaN	NaN	ataaaggcatgcaaaaa	9.08	1	ttttttac	8.11	-1
13	-394	-419	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaaaacgaagtcaaacg	8.51	1	gtaaaaaa	8.11	1

20 motifs = 113 268 0 0 thresholds = 9.538 ||6.314 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	671	656	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttcatttttt	11.42	-1	ttttatga	6.70	-1
2	513	550	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttctattttt	10.34	-1	ttttatgg	6.31	-1
3	-3811	-3859	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttccttcttt	10.37	-1	ttttatga	6.70	-1
5	-4656	-4704	NM_079253	ll.38995	h	NaN	NaN	NaN	tttccacgcttt	9.58	-1	ttttatgg	6.31	-1
6	-2880	-2849	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttcccacttt	10.27	-1	ttttatgg	6.31	-1
7	-602	-641	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttctctcttt	10.37	-1	ttttatga	6.70	-1
12	-754	-775	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttcttttttt	10.93	-1	ttttatga	6.70	-1
12	-3498	-3505	NM_057311	ll.34669	nub	NaN	NaN	NaN	ttttccgctttt	10.46	-1	ttttatgc	6.31	-1
13	-855	-824	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaagaaagaaaa	9.64	1	ccataaaa	6.31	1

21 motifs = 156 201 0 0 thresholds = 9.900 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1640	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	tcgcagcgacc	11.01	-1	tcgctgcgattggcc	10.54	-1
6	-2510	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgcagcgagc	11.70	-1	ggtccttcgcagcga	10.91	1
7	-4446	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgcagcgagc	11.70	-1	ctcctttcgcagcga	9.95	1
8	-395	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	gttcgcagcga	10.39	1	gaacgttcgcagcga	10.92	1

22 motifs = 146 233 0 0 thresholds = 8.014 ||7.728 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2675	-2668	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttttttttg	11.20	-1	gctaccta	7.73	-1
2	-1279	-1302	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttctttttgg	9.63	-1	gctacctg	8.64	-1
4	-2211	-2197	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttttttttc	8.68	-1	cctaccta	7.98	-1
8	660	613	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttttttttag	8.23	-1	cctaccta	7.98	-1
12	3791	3747	NM_057311	ll.34669	nub	NaN	NaN	NaN	tgtttgttgg	8.38	-1	tctaccta	7.77	-1

23 motifs = 45 98 0 0 thresholds = 9.535 ||8.718 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
6	1271	1290	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgccaacc	9.98	-1	ccccaccatcccc	9.16	-1
7	-1973	-1930	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcggcccacc	9.76	-1	ctgcccttgcccc	9.67	-1
12	3487	3451	NM_057311	ll.34669	nub	NaN	NaN	NaN	gccgccaccc	10.07	-1	ctaccccttcccc	11.03	-1
13	-2215	-2209	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ggggggcggc	10.39	1	cggcatgggggag	8.85	1

24 motifs = 199 208 0 0 thresholds = 8.592 ||8.478 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	-171	-201	NM_078946	ll.36039	eve	NaN	NaN	NaN	gtcgctgccgcag	9.53	-1	cccacccgatcgc	9.19	-1
6	-4707	-4749	NM_078700	ll.33059	run	NaN	NaN	NaN	gccgacgtcgctg	11.34	-1	ctccccatccccc	8.97	-1
7	-183	-210	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	agcaccgccgctg	9.82	-1	cccgctctctcgc	10.42	-1
7	-228	-210	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ggccgcctcgctg	8.84	-1	cccgctctctcgc	10.42	-1
8	-2087	-2113	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtcggcgtcgctg	11.14	-1	ctgtcccaccccc	9.08	-1
8	-2595	-2576	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgcgctgtcgctg	9.13	-1	ctcccccaacccc	9.48	-1
12	-4458	-4472	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctcgccgccgctg	9.12	-1	cactccccctcgc	9.16	-1

25 motifs = 258 269 0 0 thresholds = 7.840 ||8.553 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	557	563	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttac	8.11	-1	atcgtaaaaaa	8.72	-1
2	-2432	-2455	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttac	8.11	-1	acaataaaaaa	9.03	-1
3	-998	-1037	NM_079143	ll.38012	kr	NaN	NaN	NaN	ctttttac	9.53	1	ataataaaaaa	9.05	-1
4	-2690	-2729	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttttac	8.11	-1	atcttaaaaaa	8.63	-1
6	-4936	-4973	NM_078700	ll.33059	run	NaN	NaN	NaN	ctttttac	9.53	-1	agaataaaaaa	9.07	-1
8	-3659	-3703	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctttttac	9.53	-1	aaaataaaaaa	8.61	-1
11	-2773	-2779	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttac	8.11	-1	agcgtaaaaaa	8.75	-1
12	-1596	-1635	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctttttac	9.53	-1	atcataaaaaa	9.61	-1

26 motifs = 233 264 0 0 thresholds = 7.728 ||7.927 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1444	-1424	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	aaaggatt	8.87	-1
1	-3439	-3474	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	aaagggtt	9.05	-1
2	-1302	-1307	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aaagggtt	9.05	-1
2	-1302	-1337	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	aacccttt	9.05	1
5	-4620	-4578	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaagggtt	9.05	-1
5	-4620	-4600	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aaaggatt	8.87	-1
5	-4620	-4646	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	aacgggtt	8.11	-1
10	-2208	-2159	NM_080310	ll.31227	gt	NaN	NaN	NaN	tctacctg	8.68	-1	aaaggatt	8.87	-1
10	-2208	-2223	NM_080310	ll.31227	gt	NaN	NaN	NaN	tctacctg	8.68	-1	aacgggtt	8.11	-1

27 motifs = 80 212 0 0 thresholds = 10.181 ||8.953 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	1356	1348	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttcgccttcc	12.03	-1	tgtcgactttcatgttgttttttttt	9.37	-1
1	-443	-396	NM_169233	ll.41032	hb	NaN	NaN	NaN	gagatgccaaaaaa	10.97	1	caaaatgcagcgccagaaaatgcaaa	10.71	1
1	-2262	-2226	NM_169233	ll.41032	hb	NaN	NaN	NaN	aaacagccaaaaaa	10.91	1	gaaaaaacctgaagtaaaatggcaaa	10.61	1
2	-2408	-2359	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttagccttct	11.03	-1	tttcccgggaaaatttgtcatttttt	9.88	-1
2	-2408	-2416	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttagccttct	11.03	-1	gttacttttttattgtgttttttttt	10.93	-1
2	-2408	-2435	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttagccttct	11.03	-1	gttacttttttattgtgttttttttt	10.93	-1
2	-3604	-3573	NM_079463	ll.40287	kni	NaN	NaN	NaN	gttcggctaaaaaa	10.79	1	aaaaaataattttgataccctgcaaa	9.61	1
2	-3604	-3595	NM_079463	ll.40287	kni	NaN	NaN	NaN	gttcggctaaaaaa	10.79	1	aaaaaataattttgataccctgcaaa	9.61	1
4	-2023	-2015	NM_078946	ll.36039	eve	NaN	NaN	NaN	tgttttggccgacc	11.08	-1	ttttttgttttggccgaccgattttt	10.45	-1
6	-605	-591	NM_078700	ll.33059	run	NaN	NaN	NaN	gcgtggcgaaaaaa	11.15	1	aaaaaataaaattcaaagcgaagaaa	12.31	1
8	4335	4343	NM_164966	ll.34569	salm	NaN	NaN	NaN	agaaagcaaaaaaa	11.35	1	aaaaaaacagctgcgactgagggaaa	9.54	1
9	5209	5219	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	ttttttcgcggagc	10.63	-1	caaaattcagcaagatcagaaacaaa	10.62	1
10	-2045	-2036	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttttcgctgaat	10.56	-1	tttttttttcgctgaatctggttttt	11.80	-1
11	-2727	-2736	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttcgcaggcc	10.93	-1	tttgtacttcgattttcgattttttt	12.47	-1
11	-2727	-2775	NM_164546	ll.33583	odd	NaN	NaN	NaN	ttttttcgcaggcc	10.93	-1	ttttttgctctcgttgttatattttt	11.44	-1

28 motifs = 9 233 0 0 thresholds = 7.550 ||7.728 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-2674	-2668	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttttgc	8.02	-1	gctaccta	7.73	-1
1	-3464	-3439	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttttgtgc	7.90	-1	gctacctg	8.64	-1
2	625	646	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttttattc	8.26	-1	tctacctg	8.68	-1
4	-2211	-2197	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttttttttc	7.68	-1	cctaccta	7.98	-1
10	-2195	-2208	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttttttacgg	7.61	-1	tctacctg	8.68	-1

29 motifs = 95 122 0 0 thresholds = 10.183 ||9.269 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-60	-69	NM_079463	ll.40287	kni	NaN	NaN	NaN	tcggccagtagg	11.18	-1	cctactggccg	9.93	-1
5	-4451	-4460	NM_079253	ll.38995	h	NaN	NaN	NaN	tcggccaggagg	11.56	-1	cctcctggccg	10.23	-1
6	452	443	NM_078700	ll.33059	run	NaN	NaN	NaN	tcggccagcagc	11.80	-1	gctgctggccg	10.38	-1
8	4249	4240	NM_164966	ll.34569	salm	NaN	NaN	NaN	tcggccagcagc	11.80	-1	gctgctggccg	10.38	-1
12	-1717	-1684	NM_057311	ll.34669	nub	NaN	NaN	NaN	tcggccagcatc	11.01	-1	ccgactgcccg	9.73	-1

30 motifs = 233 263 0 0 thresholds = 7.728 ||7.274 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	3183	3226	NM_169233	ll.41032	hb	NaN	NaN	NaN	tctacctg	8.68	-1	agtcagtc	8.12	-1
3	-1190	-1197	NM_079143	ll.38012	kr	NaN	NaN	NaN	cctaccta	7.98	-1	aggtaggc	7.27	-1
6	-722	-729	NM_078700	ll.33059	run	NaN	NaN	NaN	cctacctg	8.89	-1	aggtaggc	7.27	-1
6	-3129	-3122	NM_078700	ll.33059	run	NaN	NaN	NaN	cctacctg	8.89	-1	aggtaggc	7.27	-1
8	613	620	NM_164966	ll.34569	salm	NaN	NaN	NaN	cctaccta	7.98	-1	aggtaggc	7.27	-1
10	-224	-231	NM_080310	ll.31227	gt	NaN	NaN	NaN	cctacctg	8.89	-1	aggtaggc	7.27	-1
11	-149	-142	NM_164546	ll.33583	odd	NaN	NaN	NaN	cctacctg	8.89	-1	aggtaggc	7.27	-1

31 motifs = 10 87 0 0 thresholds = 5.100 ||9.586 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-382	-420	NM_169233	ll.41032	hb	NaN	NaN	NaN	agaaa	5.10	1	gcctttttggc	10.78	-1
1	-469	-420	NM_169233	ll.41032	hb	NaN	NaN	NaN	agaaa	5.10	1	gcctttttggc	10.78	-1
2	-585	-539	NM_079463	ll.40287	kni	NaN	NaN	NaN	agaaa	5.10	1	gccgttttggc	10.72	-1
4	-4493	-4465	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttct	5.10	-1	gccatttggac	10.19	-1
7	-596	-583	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	agaaa	5.10	1	gccttttgtgc	10.78	-1
7	-605	-583	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	agaaa	5.10	1	gccttttgtgc	10.78	-1
8	4198	4174	NM_164966	ll.34569	salm	NaN	NaN	NaN	tttct	5.10	-1	gccgtttggcc	10.57	-1
9	-912	-887	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	tttct	5.10	-1	gccgtttgtgc	10.72	-1

32 motifs = 183 199 0 0 thresholds = 8.369 ||8.592 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1629	1662	NM_078946	ll.36039	eve	NaN	NaN	NaN	ctgtcccgctcgc	9.94	-1	gccgccgtcgctg	11.89	-1
5	-2067	-2081	NM_079253	ll.38995	h	NaN	NaN	NaN	caacgcctctgcc	10.11	-1	gcctctgccgccg	9.20	-1
6	-4595	-4619	NM_078700	ll.33059	run	NaN	NaN	NaN	ccgccgcgctgcc	8.54	-1	gccgcagccgcag	9.24	-1
6	-4753	-4707	NM_078700	ll.33059	run	NaN	NaN	NaN	ccatccccctccc	10.62	-1	gccgacgtcgctg	11.34	-1
7	-206	-183	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctttcccgctctc	9.24	-1	agcaccgccgctg	9.82	-1
7	-206	-228	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctttcccgctctc	9.24	-1	ggccgcctcgctg	8.84	-1
8	-2113	-2087	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctgtcccaccccc	8.54	-1	gtcggcgtcgctg	11.14	-1
12	-4472	-4458	NM_057311	ll.34669	nub	NaN	NaN	NaN	ggcagcggcggcg	9.89	-1	ctcgccgccgctg	9.12	-1

33 motifs = 170 188 0 0 thresholds = 8.294 ||8.817 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-2044	-2034	NM_079463	ll.40287	kni	NaN	NaN	NaN	agccagcgatttcg	9.64	1	ccagcgattt	10.14	-1
3	-14	-4	NM_079143	ll.38012	kr	NaN	NaN	NaN	acgcagcgaatttg	9.58	1	gcagcgaatt	9.65	-1
4	-1499	-1454	NM_078946	ll.36039	eve	NaN	NaN	NaN	cgatttcgctgcct	10.76	-1	gcagcgattt	10.43	-1
8	-668	-684	NM_164966	ll.34569	salm	NaN	NaN	NaN	tgagagcgagcgag	9.49	1	acagcaattt	9.03	-1

34 motifs = 31 41 261 0 thresholds = 9.075 ||9.521 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-338	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	ctctctcgctc	12.70	-1	gtgagtga	7.88	-1
3	-69	-104	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgtgcgtgtgagcgggag	11.66	1	ctctcccgctc	10.52	-1	gtgagtga	7.88	-1
7	-212	-196	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctt	11.20	-1	ttgagtga	8.87	-1

35 motifs = 270 270 0 0 thresholds = 7.035 ||7.035 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-3698	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	caaccctttg	7.52	-1	taacccgttc	9.05	-1
1	-3725	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	taacccgttc	9.05	-1	caaccctttg	7.52	-1
2	-1314	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1344	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	taaccctttt	10.31	-1
2	-1344	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	taaccctttt	10.31	-1	caaccctttt	8.65	-1
2	-1364	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	caaccctttt	8.65	-1	taaccctttt	10.31	-1
5	-4571	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	taatcctttc	8.21	-1	taatcctttc	8.21	-1
5	-4593	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	taatcctttc	8.21	-1	taatcctttc	8.21	-1
6	-934	-951	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaaggctta	8.27	1	aaatcctttt	7.12	1
6	-951	-934	NM_078700	ll.33059	run	NaN	NaN	NaN	aaatcctttt	7.12	1	aaaaggctta	8.27	1
6	-2826	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaagggttg	8.65	1	tgatcctttt	7.26	1
6	-2842	-2826	NM_078700	ll.33059	run	NaN	NaN	NaN	tgatcctttt	7.26	1	aaaagggttg	8.65	1
10	-2497	-2537	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	tcaccctttt	8.92	-1
10	-2537	-2497	NM_080310	ll.31227	gt	NaN	NaN	NaN	tcaccctttt	8.92	-1	tcaccctttt	8.92	-1

36 motifs = 264 264 270 0 thresholds = 7.927 ||7.927 ||7.035 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-3691	-3732	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacccgtt	8.11	1	aacgggtt	8.11	-1	caaccctttg	7.52	-1
1	-3691	-3732	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacccgtt	8.11	1	aacgggtt	8.11	-1	taacccgttc	9.05	-1
1	-3732	-3691	-3698	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	aacccgtt	8.11	1	caaccctttg	7.52	-1
1	-3732	-3691	-3725	NM_169233	ll.41032	hb	NaN	NaN	NaN	aacgggtt	8.11	-1	aacccgtt	8.11	1	taacccgttc	9.05	-1
2	-1307	-1337	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1	taaccctttt	10.31	-1
2	-1307	-1337	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1	taaccctttt	10.31	-1
2	-1337	-1307	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1	taaccctttt	10.31	-1
2	-1337	-1307	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1	taaccctttt	10.31	-1
2	-1337	-1371	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1	taaccctttt	10.31	-1
2	-1337	-1371	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aacccttt	9.05	1	aaagggtt	9.05	-1	caaccctttt	8.65	-1
2	-1371	-1337	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1	taaccctttt	10.31	-1
2	-1371	-1337	-1364	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaagggtt	9.05	-1	aacccttt	9.05	1	caaccctttt	8.65	-1
5	-4578	-4600	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaggatt	8.87	-1	taatcctttc	8.21	-1
5	-4578	-4600	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	aaagggtt	9.05	-1	aaaggatt	8.87	-1	taatcctttc	8.21	-1
5	-4600	-4578	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	aaagggtt	9.05	-1	taatcctttc	8.21	-1
5	-4600	-4578	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	aaaggatt	8.87	-1	aaagggtt	9.05	-1	taatcctttc	8.21	-1
10	-1086	-1115	-1122	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1	aaatcctttt	7.12	-1
10	-1115	-1086	-1122	NM_080310	ll.31227	gt	NaN	NaN	NaN	aaaggatt	8.87	-1	aaaggatt	8.87	-1	aaatcctttt	7.12	-1

37 motifs = 36 102 104 0 thresholds = 9.062 ||10.493 ||9.720 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-2508	-2496	-2522	NM_169233	ll.41032	hb	NaN	NaN	NaN	taaattcaacattttt	10.87	-1	tttttgaaaaaaaaaaa	13.00	1	taaattcaacatttttgaaaaaaaa	13.55	1
6	-4359	-4331	-4319	NM_078700	ll.33059	run	NaN	NaN	NaN	aaaagatatttaattt	11.30	1	ttttttactacaaaata	11.89	-1	cttaaattaaataatttaaattgaa	10.38	-1
7	-3910	-3934	-3924	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	taattttattgttttt	12.43	-1	tttttgtaagaaaataa	11.46	1	attaattttattgtttttgtaagaa	12.25	-1
9	6662	6650	6676	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aataatgatttattta	10.63	1	tattttgattttaataa	11.80	1	tttgattttaataatgatttattta	10.86	-1
12	-4760	-4750	-4740	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaatatgtatttttt	11.06	-1	ttttttttttataaaaa	13.40	1	ttttttttataaaaactactgctta	9.91	-1
13	-2755	-2731	-2746	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	taaaaataacattttt	10.47	-1	tttttttcatatcaata	10.73	-1	atttttttcatatcaataaagaaaa	11.74	-1
13	-2755	-2745	-2724	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	taaaaataacattttt	10.47	-1	tttttttcatatcaata	10.73	-1	atttttttcatatcaataaagaaaa	11.74	-1

38 motifs = 247 261 0 0 thresholds = 7.063 ||7.876 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-342	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	gcgagaga	8.05	-1	gtgagtga	7.88	-1
2	-316	-287	NM_079463	ll.40287	kni	NaN	NaN	NaN	gagagaga	8.19	-1	gtgagtga	7.88	-1
7	-186	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gcgagaga	8.05	-1	ctgagtgc	7.89	-1
7	-204	-160	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagaga	8.19	1	ctgagtgc	7.89	-1
7	-204	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gagagaga	8.19	1	ttgagtga	8.87	-1
8	-1104	-1090	NM_164966	ll.34569	salm	NaN	NaN	NaN	gcgagaga	8.05	-1	gtgagtga	7.88	-1
11	126	102	NM_164546	ll.33583	odd	NaN	NaN	NaN	gagacagg	7.06	-1	ttgagtga	8.87	-1

39 motifs = 113 231 0 0 thresholds = 9.538 ||9.716 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	513	543	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttttctattttt	10.34	-1	cataaaaa	9.72	-1
3	-3811	-3852	NM_079143	ll.38012	kr	NaN	NaN	NaN	ttttccttcttt	10.37	-1	cataaaaa	9.72	-1
6	-2880	-2842	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttcccacttt	10.27	-1	cataaaaa	9.72	-1
7	-602	-634	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttctctcttt	10.37	-1	cataaaaa	9.72	-1
13	-855	-817	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaagaaagaaaa	9.64	1	cataaaaa	9.72	-1

40 motifs = 44 88 0 0 thresholds = 8.273 ||9.584 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
6	-61	-13	NM_078700	ll.33059	run	NaN	NaN	NaN	cctctgtcgacg	8.34	-1	ctgccaacga	10.82	-1
6	-4701	-4676	NM_078700	ll.33059	run	NaN	NaN	NaN	ccgctgccgacg	11.65	-1	ctgccagcgc	10.43	-1
6	-4713	-4676	NM_078700	ll.33059	run	NaN	NaN	NaN	ccgctgccgacg	11.65	-1	ctgccagcgc	10.43	-1
7	211	234	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	gctctgccgccg	10.51	-1	ctgccagcgc	10.43	-1
8	4268	4309	NM_164966	ll.34569	salm	NaN	NaN	NaN	gtgttgctgctg	8.40	-1	ctgccagcga	11.43	-1
9	4108	4088	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	catttgccgctg	8.54	-1	cttccagcga	10.11	-1

41 motifs = 165 194 0 0 thresholds = 7.934 ||9.307 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2176	2137	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccccacccctgcccccttggcccat	9.17	1	ttgcctggctgcac	10.63	-1
5	1284	1247	NM_079253	ll.38995	h	NaN	NaN	NaN	ccgctccccaacctacgccgcctcc	10.84	-1	ttggccgccagcca	11.00	-1
6	1295	1261	NM_078700	ll.33059	run	NaN	NaN	NaN	caaaatcccccaccatccccccaac	10.69	-1	ttgccgccaaccaa	10.49	1
8	-523	-508	NM_164966	ll.34569	salm	NaN	NaN	NaN	cacacacacacacacgtacgcaaac	9.12	-1	aggcagccgaacaa	9.44	1
8	-1122	-1143	NM_164966	ll.34569	salm	NaN	NaN	NaN	aatggtgagcgagagagagggagtg	11.01	1	gcgctgccgagcga	9.63	1

42 motifs = 233 270 0 0 thresholds = 7.728 ||7.035 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	-1444	-1417	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	taatcctttc	8.21	-1
1	-3439	-3481	NM_169233	ll.41032	hb	NaN	NaN	NaN	gctacctg	8.64	-1	caaccctttc	7.99	-1
2	-1302	-1314	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	taaccctttt	10.31	-1
2	-1302	-1344	NM_079463	ll.40287	kni	NaN	NaN	NaN	gctacctg	8.64	-1	taaccctttt	10.31	-1
5	-4620	-4571	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	taatcctttc	8.21	-1
5	-4620	-4593	NM_079253	ll.38995	h	NaN	NaN	NaN	cctacctg	8.89	-1	taatcctttc	8.21	-1
10	-224	-252	NM_080310	ll.31227	gt	NaN	NaN	NaN	cctacctg	8.89	-1	tcaccccttt	7.63	-1
10	-2208	-2216	NM_080310	ll.31227	gt	NaN	NaN	NaN	tctacctg	8.68	-1	caacccgttc	7.40	-1

43 motifs = 10 48 184 212 thresholds = 5.100 ||7.864 ||7.532 ||8.953 ||

t	p1	p2	p3	p4	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3	strand3	seq4	score4
1	1992	2014	2020	2037	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttct	5.10	-1	aaatggcaaa	10.58	-1	atttttgcca	8.58	-1	tttttgccattttcatgatattttta	9.53	-1
4	-2410	-2371	-2404	-2377	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttct	5.10	-1	ttttccattg	9.82	-1	ttctgggcca	7.53	-1	tttgttgctctttttatgagtttttt	12.04	-1
4	-2414	-2371	-2404	-2377	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttct	5.10	-1	ttttccattg	9.82	-1	ttctgggcca	7.53	-1	tttgttgctctttttatgagtttttt	12.04	-1
6	-615	-574	-602	-591	NM_078700	ll.33059	run	NaN	NaN	NaN	tttct	5.10	-1	ttttcctttt	10.80	-1	tttttcgcca	8.50	-1	aaaaaataaaattcaaagcgaagaaa	12.31	1
13	-127	-96	-90	-102	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tttct	5.10	-1	ttttactttt	8.11	-1	tttttgccca	8.76	-1	tttctcttttctttagtctgcttttt	10.03	-1
13	-134	-96	-90	-102	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tttct	5.10	-1	ttttactttt	8.11	-1	tttttgccca	8.76	-1	tttctcttttctttagtctgcttttt	10.03	-1

44 motifs = 187 201 0 0 thresholds = 9.141 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1665	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	cgctgcgattg	10.02	1	tcgctgcgattggcc	10.54	-1
5	-230	-242	NM_079253	ll.38995	h	NaN	NaN	NaN	gtctcgcagcg	9.52	-1	cgcgtctcgcagcgg	9.87	1
6	-2513	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	ccttcgcagcg	9.42	-1	ggtccttcgcagcga	10.91	1
7	-4449	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ctttcgcagcg	10.02	-1	ctcctttcgcagcga	9.95	1
8	2022	2010	NM_164966	ll.34569	salm	NaN	NaN	NaN	ggttcgcagcg	9.80	-1	gttggttcgcagcga	9.31	1
8	-398	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	cgttcgcagcg	10.67	-1	gaacgttcgcagcga	10.92	1

45 motifs = 31 83 261 0 thresholds = 9.075 ||7.183 ||7.876 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	-338	-350	-326	NM_169233	ll.41032	hb	NaN	NaN	NaN	cactcacccactctctcgc	13.06	-1	gagtgggtgagtg	7.32	1	gtgagtga	7.88	-1
3	-69	-104	-55	NM_079143	ll.38012	kr	NaN	NaN	NaN	gcgtgcgtgtgagcgggag	11.66	1	ggctctcccgctc	8.37	-1	gtgagtga	7.88	-1
7	-212	-196	-238	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	atgcgagagagcgggaaag	10.32	1	ctctctctctttc	9.57	-1	ttgagtga	8.87	-1

46 motifs = 212 241 0 0 thresholds = 8.953 ||8.467 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2685	2641	NM_169233	ll.41032	hb	NaN	NaN	NaN	gaaaaactacgcaaatcaaagtgaaa	10.76	1	n	NaN	NaN
2	-606	-557	NM_079463	ll.40287	kni	NaN	NaN	NaN	aaaaaccggcggactttgaaaagaaa	10.47	1	n	NaN	NaN
3	-2031	-2004	NM_079143	ll.38012	kr	NaN	NaN	NaN	tttttggtctttacttttaacttttt	9.50	-1	n	NaN	NaN
4	-519	-536	NM_078946	ll.36039	eve	NaN	NaN	NaN	tttcccgccctttcctcagcgttttg	9.33	-1	ggaaaggg	9.07	-1
4	-560	-536	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttcgccgttttattgccaattttt	12.42	-1	ggaaaggg	9.07	-1
4	-2015	-1977	NM_078946	ll.36039	eve	NaN	NaN	NaN	ttttttgttttggccgaccgattttt	10.45	-1	n	NaN	NaN
9	-3553	-3596	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	gtttctggctcatttttttttttttt	9.55	-1	n	NaN	NaN
12	-2366	-2393	NM_057311	ll.34669	nub	NaN	NaN	NaN	ctttcctttcctttttcctttttttt	10.33	-1	ggaaaggg	9.07	-1

47 motifs = 50 181 0 0 thresholds = 8.756 ||8.344 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2558	2600	NM_169233	ll.41032	hb	NaN	NaN	NaN	tttttaataatatttact	10.80	1	aatgcagcaactgc	11.17	1
8	1479	1443	NM_164966	ll.34569	salm	NaN	NaN	NaN	taataaattaaattaata	11.99	1	gttgttgctgcatc	10.84	-1
9	-4488	-4474	NM_080500	ll.42034	Ubx	NaN	NaN	NaN	aggaaaattttttccgtt	8.76	-1	gcttctgcagcggt	8.78	-1
11	-2404	-2419	NM_164546	ll.33583	odd	NaN	NaN	NaN	atagtaacaatattagta	10.51	1	acaggcgcaacaac	8.39	1
13	-1837	-1800	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaacaaaccattttgaat	9.22	1	acagcaacaacagc	8.45	1
13	-1837	-1812	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	aaacaaaccattttgaat	9.22	1	acagcaacaacagc	8.45	1

48 motifs = 67 223 0 0 thresholds = 8.587 ||9.064 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
1	2035	2051	NM_169233	ll.41032	hb	NaN	NaN	NaN	ccattttcatgatatttt	9.93	-1	gggggcggtgttggggtggg	12.25	1
2	-3120	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	ccatcaaaggtatttttt	9.82	-1	ctcctgccgccacccgtcgc	11.67	-1
8	-111	-155	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctaaaatttagttatttt	10.49	-1	cgtttcccactgccgacggc	10.97	-1
8	-127	-155	NM_164966	ll.34569	salm	NaN	NaN	NaN	ctaaaatttagttatttt	10.49	-1	cgtttcccactgccgacggc	10.97	-1
12	3505	3492	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaaattttattttattt	10.81	1	ccccttccccttccatcgcc	11.13	-1
12	3505	3461	NM_057311	ll.34669	nub	NaN	NaN	NaN	aaaaattttattttattt	10.81	1	ccccttccccttccatcgcc	11.13	-1

49 motifs = 110 201 0 0 thresholds = 9.808 ||8.916 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
4	1642	1655	NM_078946	ll.36039	eve	NaN	NaN	NaN	atcgcagcga	10.20	-1	tcgctgcgattggcc	10.54	-1
6	-2512	-2525	NM_078700	ll.33059	run	NaN	NaN	NaN	ttcgcagcga	10.79	-1	ggtccttcgcagcga	10.91	1
7	-4448	-4461	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttcgcagcga	10.79	-1	ctcctttcgcagcga	9.95	1
8	2023	2010	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcga	10.79	-1	gttggttcgcagcga	9.31	1
8	-397	-410	NM_164966	ll.34569	salm	NaN	NaN	NaN	ttcgcagcga	10.79	-1	gaacgttcgcagcga	10.92	1

50 motifs = 113 172 184 0 thresholds = 9.538 ||8.804 ||7.532 ||NaN ||

t	p1	p2	p3	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2		seq3	score3
1	2553	2560	2592	NM_169233	ll.41032	hb	NaN	NaN	NaN	ttttcccgtttt	11.79	-1	tttttcccgttttgcgttt	12.25	-1	tttttggcta	7.89	-1
6	-392	-378	-365	NM_078700	ll.33059	run	NaN	NaN	NaN	ttttcctttttt	11.66	-1	ttttttccgctgttatttt	10.76	-1	tttttggcca	11.20	-1
7	-602	-609	-570	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	ttttctctcttt	10.37	-1	caacagaaaagagagaaaa	10.67	1	ttttcggcca	8.21	-1
13	-102	-114	-90	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttttcacttttt	12.15	-1	tttttgctctttctctttt	9.97	-1	tttttgccca	8.76	-1
13	-102	-129	-90	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	ttttcacttttt	12.15	-1	tttttgctctttctctttt	9.97	-1	tttttgccca	8.76	-1

51 motifs = 81 227 0 0 thresholds = 9.693 ||8.990 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
5	1238	1261	NM_079253	ll.38995	h	NaN	NaN	NaN	tggctggcggc	11.05	-1	ccagccagtcaatccgctccc	10.85	-1
6	-4690	-4725	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgctgccgac	10.40	-1	agccgctgccgacgtcgctgc	9.40	1
6	-4702	-4725	NM_078700	ll.33059	run	NaN	NaN	NaN	tcgctgccgac	10.40	-1	agccgctgccgacgtcgctgc	9.40	1
7	-4423	-4434	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	tcgctgccgac	10.40	-1	gcagcgagcccatcatcgccc	13.53	-1
13	-1961	-1977	NM_078834	ll.34673	pdm2	NaN	NaN	NaN	tggctgccggc	11.16	-1	tgccgattggctgccggctgc	10.48	1

52 motifs = 121 173 0 0 thresholds = 9.671 ||8.143 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-3134	-3141	NM_079463	ll.40287	kni	NaN	NaN	NaN	cgccggccat	9.84	-1	ctgccgccacccgtcgc	8.88	-1
4	1676	1657	NM_078946	ll.36039	eve	NaN	NaN	NaN	cggcggccat	10.87	-1	tcgctgcgattggccgc	9.95	-1
6	-226	-184	NM_078700	ll.33059	run	NaN	NaN	NaN	cggcggcaat	10.77	-1	tacctgccccggcaccc	9.78	-1
7	-105	-89	NM_057345	ll.42037	abd-A	NaN	NaN	NaN	cggcggcaat	10.77	-1	ttgccgccgctgctgca	10.04	-1

53 motifs = 21 21 0 0 thresholds = 6.388 ||6.388 ||NaN ||NaN ||

t	p1	p2	nm	ll	ug	chr	pos	strand	seq1	score1	strand1	seq2	score2	strand2
2	-1876	-1886	NM_079463	ll.40287	kni	NaN	NaN	NaN	ttaatccg	7.40	-1	cggattaa	7.40	1
2	-1886	-1876	NM_079463	ll.40287	kni	NaN	NaN	NaN	cggattaa	7.40	1	ttaatccg	7.40	-1
5	497	461	NM_079253	ll.38995	h	NaN	NaN	NaN	ttaatcca	6.39	-1	ttaatcca	6.39	-1
5	461	497	NM_079253	ll.38995	h	NaN	NaN	NaN	ttaatcca	6.39	-1	ttaatcca	6.39	-1
6	-3165	-3180	NM_078700	ll.33059	run	NaN	NaN	NaN	ttaatctc	6.68	-1	ttaatccc	7.87	1
6	-3180	-3165	NM_078700	ll.33059	run	NaN	NaN	NaN	ttaatccc	7.87	1	ttaatctc	6.68	-1
10	-1821	-1848	NM_080310	ll.31227	gt	NaN	NaN	NaN	ctaatccg	6.65	-1	ttaatcca	6.39	-1
10	-1848	-1821	NM_080310	ll.31227	gt	NaN	NaN	NaN	ttaatcca	6.39	-1	ctaatccg	6.65	-1

Questions? --> kreiman@mit.edu

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