| List of hs/mm motifs | |||||||
| TRANSFAC name | Motif Length | TRANSFAC Identifier | TF name | consensus sequence | most likely sequence | ||
| V_PAX5_02 | 28 | M00144 | BSAP | vrhvdrdndbbynrrkckkrwcvrynvh | aaacagatacctgaagcgtgaccataca | ||
| V_PAX5_01 | 28 | M00143 | BSAP | bhnnnrnbcanbsndknrdvvmvdvhnb | tcgaggcgcaatgatgcgtagccgcccc | ||
| V_CEBP_01 | 13 | M00159 | C/EBP | nvddtkbwdwnnn | tatttggtaaggc | ||
| V_FOXJ2_02 | 14 | M00423 | FOXJ2 | vhmwyaayrbykdn | ataataatattttt | ||
| V_FOXJ2_01 | 18 | M00422 | FOXJ2 | hhnhmdryaaayanhnnn | ttataaataaacattcaa | ||
| V_CEBPB_02 | 14 | M00117 | C/EBPbeta | nnnttrsnhmannn | atattgcacaactc | ||
| V_CEBPB_01 | 14 | M00109 | C/EBPbeta | dnvtkddkhaadnn | agattgtgcaatgt | ||
| V_TAL1ALPHAE47_01 | 16 | M00066 | Tal-1alpha/E47 | dnnrmcakatkkynnn | tcgaacagatggtgac | ||
| V_TST1_01 | 15 | M00133 | Tst-1 | nnbvwwtwhvvvbdn | gaggaattaaaatac | ||
| V_RORA1_01 | 13 | M00156 | RORalpha1 | dnwwndrkktcah | atatcaaggtcat | ||
| V_AP2_Q6 | 12 | M00189 | AP-2 | vdyccvvvkvms | cgcccgccggcg | ||
| V_CDPCR1_01 | 10 | M00104 | CDP CR1 | natyratbss | aatcgatcgc | ||
| V_CART1_01 | 18 | M00416 | Cart-1 | nvntaatknnhattrbbn | aactaattaccattatcg | ||
| V_HNF1_01 | 15 | M00132 | HNF-1 | dkttawtnwwydnhn | ggttaataattacca | ||
| V_E2F_02 | 8 | M00050 | E2F | tttssckc | tttcgcgc | ||
| V_MEF2_04 | 22 | M00233 | MEF-2 | nntkttdctawaaatakawhhn | actgttactaaaaatagaaact | ||
| V_MEF2_03 | 22 | M00232 | MEF-2 | nnnndwdctwwaaatakhhhnn | tgtggttctaaaaatagaacaa | ||
| V_MEF2_01 | 16 | M00006 | MEF-2 | bkytaaaaataacyyy | ctctaaaaataactct | ||
| V_SREBP1_02 | 11 | M00221 | SREBP-1 | brtcaccccac | gatcaccccac | ||
| V_NFY_Q6 | 11 | M00185 | NF-Y | bvrccaatvdb | taaccaatcac | ||
| V_LMO2COM_02 | 9 | M00278 | Lmo2 complex | nhkatavbs | cagataggg | ||
| V_STAT3_01 | 21 | M00225 | STAT3 | nbbbrwttccskkaarysnnn | tggcatttcccggaaatgatt | ||
| V_MEIS1_01 | 12 | M00419 | MEIS1 | nhntkacasnnn | cagtgacaggtc | ||
| V_RFX1_02 | 18 | M00281 | RFX1 | nnvkhrcnnhrkyaacnn | tagtagccatggcaacaa | ||
| V_RFX1_01 | 17 | M00280 | RFX1 | nnvkhrcnhrkyaacnn | tagtagcctggcaacaa | ||
| V_PAX6_01 | 21 | M00097 | Pax-6 | nhnnttymykswtsrntkvnn | aattttcacgcatgagttcac | ||
| V_TATA_01 | 15 | M00252 | TATA | vyatawadvnvnnnn | gtataaaaggcgggg | ||
| V_NFKAPPAB65_01 | 10 | M00052 | NF-kappaB (p65) | bkkrnwtycc | gggaatttcc | ||
| V_MYOGNF1_01 | 29 | M00056 | myogenin / NF-1 | hrbhnbybbnndykkkhdnbbnsymddnh | cacctgttcaatttggcacggagccaaca | ||
| V_EGR1_01 | 12 | M00243 | Egr-1 | wtkckkrkkhkk | atgcgtgggcgt | ||
| V_NFY_C | 14 | M00209 | NF-Y | nbtkattkkyhrvh | tctgattggttagt | ||
| V_USF_Q6 | 10 | M00187 | USF | shcacdkkdb | gtcacgtggc | ||
| V_ZID_01 | 13 | M00085 | ZID | bskctcyakbdym | cggctctatcatc | ||
| V_PBX1_02 | 15 | M00124 | Pbx1b | nhnatcaatcaadnh | cacatcaatcaaatt | ||
| V_PBX1_01 | 9 | M00096 | Pbx-1 | whbwwwhaw | atcaatcaa | ||
| V_YY1_02 | 20 | M00069 | YY1 | nnnsbrccatstdsnhtsnd | ccgcggccatcttggctgct | ||
| V_YY1_01 | 17 | M00059 | YY1 | nvnnnycaknbhnnnnn | gaacaccatttttgaac | ||
| V_COUP_01 | 14 | M00158 | COUP-TF / HNF-4 | kkamcyytrvmchb | tgacctttgaacct | ||
| V_NFAT_Q6 | 12 | M00302 | NF-AT | hnnwkkaaahhn | cagaggaaaaat | ||
| V_MYB_Q6 | 10 | M00183 | c-Myb | nnnaacbdnb | ctcaactggc | ||
| V_E4BP4_01 | 12 | M00045 | E4BP4 | nvttayktaabn | cgttatgtaacg | ||
| V_SOX9_B1 | 14 | M00410 | SOX-9 | nnndwwcaatrvnn | taagaacaatggga | ||
| V_CEBP_C | 18 | M00201 | C/EBP | nkwvtkhbkyaakvbmyd | ggtatttggcaatgcaca | ||
| V_P53_02 | 10 | M00272 | p53 | nrrcwwkyyh | agacatgcct | ||
| V_CREL_01 | 10 | M00053 | c-Rel | bkkdnwtwyc | ggggatttcc | ||
| V_ATF_01 | 14 | M00017 | ATF | hbvtkackwndnbb | ctctgacgtcaccc | ||
| V_SP1_Q6 | 13 | M00196 | Sp1 | nvdrkkmkkrrbb | ggggggcggggcc | ||
| V_MEIS1A/HOXA9_01 | 14 | M00420 | MEIS1A/HOXA9 | tkacmkkttwwyrr | tgacagttttacga | ||
| V_MIF1_01 | 18 | M00279 | MIF-1 | nnkktscwhrkymacnbb | cagttgctaggcaacggg | ||
| V_HSF1_01 | 10 | M00146 | HSF1 | dkawndddcn | agaatgttcg | ||
| V_AP4_Q6 | 10 | M00176 | AP-4 | vdcakcksbn | cacagctggt | ||
| V_AP1FJ_Q2 | 11 | M00172 | AP-1 | vvtkacnnmnh | ggtgactcagt | ||
| V_CDPCR3_01 | 15 | M00105 | CDP CR3 | cacvrrbrnntatbk | caccaatatgtatgg | ||
| V_FREAC3_01 | 16 | M00291 | Freac-3 | nnnvnktaaayaadsv | ggtaagtaaataaaca | ||
| V_HFH3_01 | 13 | M00289 | HFH-3 | dnntrtttrydkd | ggatgtttgttta | ||
| V_OCT1_Q6 | 15 | M00195 | 1-Oct | vdvhatkyaaaknmb | aaatatgcaaatcac | ||
| V_IRF1_01 | 13 | M00062 | IRF-1 | saaaasykaaasy | gaaaagtgaaacc | ||
| V_GATA2_01 | 10 | M00076 | GATA-2 | nvnkatnnbn | gcggatagcg | ||
| V_NRSF_01 | 21 | M00256 | NRSF | kbcakcaccdmkkwcakmvsm | ttcagcaccacggacagcgcc | ||
| V_CDPCR3HD_01 | 10 | M00106 | CDP CR3+HD | vrtykatbbs | gatcgatccc | ||
| V_TCF11MAFG_01 | 22 | M00284 | TCF11/MafG | vhnnnrtkasdhwkcandwvhb | ctaaaatgactcagcaattatg | ||
| V_HNF1_C | 17 | M00206 | HNF-1 | dkbyaawbawtndmhwm | agttaattattaaccaa | ||
| V_ARNT_01 | 16 | M00236 | Arnt | ndddnmacktknnnbn | gttgtcacgtgcccgc | ||
| V_AREB6_04 | 9 | M00415 | AREB6 | vbktttsnn | ctgtttcag | ||
| V_AREB6_03 | 12 | M00414 | AREB6 | vbrcacctkkdv | ctgcacctgtgc | ||
| V_AREB6_02 | 12 | M00413 | AREB6 | nnhcacctnhnn | attcacctgtac | ||
| V_AREB6_01 | 13 | M00412 | AREB6 | nhydyacctkwvy | tacttacctgtgt | ||
| V_PAX2_01 | 19 | M00098 | Pax-2 | nnhndwywhkbdhnhnbnn | cctcgtcacgcatgatgga | ||
| V_USF_02 | 14 | M00122 | USF | nnvncabvtknbnn | aaatcacgtgatat | ||
| V_FREAC4_01 | 16 | M00292 | Freac-4 | sywrdktaaacadhvn | cttaagtaaacaatgg | ||
| V_SRF_Q6 | 14 | M00186 | SRF | bnccawatwwkkvn | ggccatataaggac | ||
| V_HNF4_01 | 19 | M00134 | HNF-4 | nnnrkdbyaarkkbyvnnn | acagggtcaaaggtcaaga | ||
| V_FOXD3_01 | 12 | M00130 | FOXD3 | dwwtrttddhky | gattgtttgttt | ||
| V_GATA3_01 | 9 | M00077 | GATA-3 | nnkatddnn | gagataggg | ||
| V_ISRE_01 | 15 | M00258 | ISRE | baktttcwbttyyns | cagtttcactttccc | ||
| V_GRE_C | 16 | M00205 | GR | bkywymndvwktyctb | ggtacaatctgttctg | ||
| V_TCF11_01 | 13 | M00285 | TCF11 | ktcaynnwdnnnn | gtcattttggaag | ||
| V_GR_Q6 | 19 | M00192 | GR | nnnnnnnnnwntkwnshnn | tgggtacactgtgttctag | ||
| V_CEBP_Q2 | 14 | M00190 | C/EBP | nnnttrbdnhrnnn | acattgcataatta | ||
| V_CHOP_01 | 13 | M00249 | CHOP-C/EBPalpha | nnrtkmaayvvbb | agatgcaatcccc | ||
| V_TAXCREB_02 | 15 | M00115 | Tax/CREB | rtkackcaymyccym | atgacgcataccccc | ||
| V_SP1_01 | 10 | M00008 | Sp1 | drkksdkksh | ggggcggggt | ||
| V_TAXCREB_01 | 15 | M00114 | Tax/CREB | nnsskbtkackbmnn | gggggttgacgcaga | ||
| V_MYCMAX_02 | 12 | M00123 | c-Myc/Max | nhncacryknnh | taccacgtgtca | ||
| V_MYCMAX_01 | 14 | M00118 | c-Myc/Max | ndrscacktksyhn | cgaccacgtggtca | ||
| V_CDP_02 | 15 | M00102 | CDP | dhdatykathadhdh | tatatcgattatttt | ||
| V_CDP_01 | 12 | M00095 | CDP | ccaataaybrww | ccaataatcgat | ||
| V_XBP1_01 | 17 | M00251 | XBP-1 | dndnwbacktkdnnhwd | atgatgacgtgtcctat | ||
| V_OCT1_07 | 12 | M00248 | 1-Oct | dntatkbwaatt | tctatgctaatt | ||
| V_OCT1_06 | 14 | M00162 | 1-Oct | vdnhhtkdvatdyn | caaaatgacatgca | ||
| V_AML1_01 | 6 | M00271 | AML-1a | tkykkt | tgtggt | ||
| V_OCT1_05 | 14 | M00161 | 1-Oct | vkvmttwbcatdhb | ataatttgcatatt | ||
| V_OCT1_04 | 23 | M00138 | 1-Oct | dhdndnnhatkhwwawnnndnnd | atataattatgcaaattaaaaga | ||
| V_OCT1_03 | 13 | M00137 | 1-Oct | nnnvyaawndnnn | ctcgtaatgaggt | ||
| V_OCT1_02 | 15 | M00136 | 1-Oct | nnbmatatkcrnnnn | atgaatatgcatata | ||
| V_NF1_Q6 | 18 | M00193 | NF-1 | nnytkkcnnnndnnnnnn | tcttggcaagaagccaaa | ||
| V_ARP1_01 | 16 | M00155 | ARP-1 | ysmrbyyhtkrvmybw | tgaacccttgacccct | ||
| V_ER_Q6 | 19 | M00191 | ER | nnvrdnndnnbtkaccydn | acaggtcactgtgacctga | ||
| V_AP1_C | 9 | M00199 | AP-1 | ntkavtmab | atgagtcag | ||
| V_HAND1E47_01 | 16 | M00222 | Hand1/E47 | nndndndtctkshdnn | aatggcgtctggcatt | ||
| V_NKX61_01 | 13 | M00424 | NKX6-1 | hwyttaatkknww | tttttaattggtt | ||
| V_CREBP1CJUN_01 | 8 | M00041 | CRE-BP1/c-Jun | tkacktya | tgacgtca | ||
| V_TGIF_01 | 11 | M00418 | TGIF | wvytktcandd | agctgtcagaa | ||
| V_SRY_01 | 7 | M00148 | SRY | wawswhm | aaacaaa | ||
| V_NFE2_01 | 11 | M00037 | NF-E2 | hrmtkaskymh | tgctgagtcac | ||
| V_RREB1_01 | 14 | M00257 | RREB-1 | mcccammmmmmmmm | ccccaaaccacccc | ||
| V_ELK1_02 | 14 | M00025 | Elk-1 | nnndmmkkawvbnn | ccaaccggaagtcc | ||
| V_ELK1_01 | 16 | M00007 | Elk-1 | ndvrsmkkawkynmvh | aaaacaggaagtacgt | ||
| V_P300_01 | 14 | M00033 | p300 | dnvdrdaktdnnnb | acagggagtgagtg | ||
| V_AHRARNT_02 | 19 | M00237 | AhR/Arnt | rdbnrkykcktkhswdbbc | ggggatcgcgtgacaaccc | ||
| V_BRN2_01 | 16 | M00145 | Brn-2 | nncatbsdwaatvmdh | gccatccaaaatgaac | ||
| V_AHRARNT_01 | 16 | M00235 | AhR/Arnt | ddndndkykcktkhhv | taagggttgcgtgccc | ||
| V_MZF1_02 | 13 | M00084 | MZF1 | dndnkrkkkkndv | gggtgagggggaa | ||
| V_MZF1_01 | 8 | M00083 | MZF1 | ndnkkkka | agtgggga | ||
| V_S8_01 | 16 | M00099 | S8 | nnnnnhyaattadbnd | tttaaccaattaacct | ||
| V_CMYB_01 | 18 | M00004 | c-Myb | bvnvvnrrcvkttrnbkk | cccaacggcggttggggg | ||
| V_AHR_01 | 18 | M00139 | AhR | bybsnrnstnkcktknvw | cccccggctagcgtgaga | ||
| V_CP2_01 | 11 | M00072 | CP2 | sshmdmvcmak | gcacaacccag | ||
| V_BRACH_01 | 24 | M00150 | Brachyury | hdhntsrcacstakktktsamwhb | ctagtcacacctaggtgtgaaatt | ||
| V_NMYC_01 | 12 | M00055 | N-Myc | nnncacktknnn | tcccacgtgtca | ||
| V_GATA1_01 | 10 | M00075 | GATA-1 | bvnkatnnnn | cgtgataggg | ||
| V_SOX5_01 | 10 | M00042 | Sox-5 | nnaacaatnn | ttaacaatac | ||
| V_IK1_01 | 13 | M00086 | Ik-1 | nhnykkkaahdhn | acttgggaatacc | ||
| V_LYF1_01 | 9 | M00141 | Lyf-1 | kytrkkrrr | tttgggaga | ||
| V_HOXA3_01 | 9 | M00395 | HOXA3 | svtdnddkb | cctaattgg | ||
| V_HOX13_01 | 30 | M00023 | Hox-1.3 | yschhhbhycyymattabyvndhvmvhycn | tgccaactcccccattagtgctcgactcca | ||
| V_EVI1_06 | 9 | M00011 | Evi-1 | acaakatar | acaagataa | ||
| V_PAX3_01 | 13 | M00360 | Pax-3 | tckwcacrshyhv | tcgtcacgcttca | ||
| V_MSX1_01 | 9 | M00394 | Msx-1 | hnbtwhntk | ccgtaattg | ||
| V_PPARA_01 | 20 | M00242 | PPARalpha/RXR-alpha | vhrvdvyrkknmawakktsw | caaaactaggtcaaaggtca | ||
| V_NKX25_02 | 8 | M00241 | Nkx2-5 | swtaatwv | cttaattg | ||
| V_NKX25_01 | 7 | M00240 | Nkx2-5 | dyaaktr | tcaagtg | ||
| V_EN1_01 | 7 | M00396 | En-1 | rwddtbb | gtaattg | ||
| V_PAX4_04 | 30 | M00380 | Pax-4 | rnwwawwdnnnnnnhnnnnnnnhhbmyhsb | aaaaattaacccaaaatccaacctcacccc | ||
| V_PAX4_03 | 12 | M00378 | Pax-4 | nnnnhhcashsb | aatccccacccc | ||
| V_PAX4_02 | 11 | M00377 | Pax-4 | nrhwaattdvv | gaataattacc | ||
| V_PAX4_01 | 21 | M00373 | Pax-4 | nbnvktsrnkskbvnnvvnbn | ggcggtcatgcgtgcgcgacc | ||
| V_GKLF_01 | 14 | M00286 | GKLF | vnndvrvrrvdrkk | aaaaaaaaaaaggg | ||
| V_COMP1_01 | 24 | M00057 | COMP1 | nvnnwdswwwrvsndbdvvmvvbn | tgttttgattgacaacaaaaggcc | ||
| TRANSFAC name | Motif Length | TRANSFAC Identifier | TF name | consensus sequence | most likely sequence | ||