| ID | locus link | refseq | locus tag | symbol | gene |
| 1 | II.41032 | NM_169233 | CG9786 | hb | hunchback |
| 2 | II.40287 | NM_079463 | CG4717 | kni | knrips |
| 3 | II.38012 | NM_079143 | CG3340 | kr | krueppel |
| 4 | II.36039 | NM_078946 | CG2328 | eve | even-skipped |
| 5 | II.38995 | NM_079253 | CG6494 | h | hairy |
| 6 | II.33059 | NM_078700 | CG1849 | run | run |
| 7 | II.42037 | NM_057345 | CG10325 | abd-A | abdominal A |
| 8 | II.34569 | NM_164699 | CG6464 | salm | spalt major |
| 9 | II.42034 | NM_080500 | CG10388 | Ubx | Ultrabithroax |
| 10 | II.31227 | NM_080310 | CG7952 | gt | giant |
| 11 | II.33583 | NM_164546 | CG3851 | odd | odd-skipped |
| 12 | II.34669 | NM_057311 | CG6246 | nub | nubbin |
| 13 | II.34673 | NM_078834 | CG12287 | pdm2 | POU domain protein 2 |
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