TopTranscriptional regulation in eukaryotes
Supplementary material and resources from "Identification of sparsely distributed clusters of cis regulatory elements in sets of co-expressed genes" by Gabriel Kreiman
1. Tables and figures refered to in the text
Supplemental table 1: Performance on random sets of mouse genes, masked sequences
Supplemental table 2: Performance on random sets of mouse genes, unmasked sequences
Supplemental table 4: Occurrences in the whole fly genome of the module shown in Figure 2
Supplemental table 5: Occurrences in the whole human genome of the module shown in Figure 3
Supplemental figure 2: False alarm rate as a function of the propotion of genes with hits
Supplemental figure 3: Top module found for the CLB2 cluster in yeast
Set of potentially coregulated genes
3. Performance on random sets of genes
4. Performance on known regulatory models
4a Analysis of the clb2 set in yeast
5. Resources
All the code is available upon request from the author
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