1. Tables and figures refered to in the text
Supplemental table 1: Performance on random sets of mouse genes, masked sequences
Supplemental table 2: Performance on random sets of mouse genes, unmasked sequences
Supplemental table 4: Occurrences in the whole fly genome of the module shown in Figure 2
Supplemental table 5: Occurrences in the whole human genome of the module shown in Figure 3
Supplemental figure 2: False alarm rate as a function of the propotion of genes with hits
Supplemental figure 3: Top module found for the CLB2 cluster in yeast
Overall strategy
Nomenclature
Set of potentially coregulated genes
Sequences
Single motifs
Motif scanning
Preliminary search for modules
Module enrichment
Figures
References
3. Performance on random sets of genes
4. Performance on known regulatory models
4a Analysis of the clb2 set in yeast
4b Analysis of the pattern generation set in the fly
4c Analysis of the muscle regulatory regions in humans
5. Resources
All the code is available upon request from the author
Alternatively, enter the sequences or identifiers for your genes of interest to run on our local server
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