Kreiman Lab Publications

  1. Ponce C.R., Xiao W., Schade P.F., Hartmann T.S., Kreiman G., Livingstone M. (2019). Evolving Images for Visual Neurons Using a Deep Generative Network Reveals Coding Principles and Neuronal Preferences. Cell, 177:999-1009. PDF / Supplementary Material / Resources / bioRxiv 10.1101/516484. PDF

  2. Kreiman G and Serre T. The role of feedback in vision (Submitted to This Year in Cognitivie Neuroscience) PDF
  3. Kreiman G (2019). What do neurons really want? The role of semantics in cortical representations. In Psychology of Learning and Motivation, Volume 70. Chapter 8. PDF / Resources

  4. Vinken K, Boix X, Kreiman G (2019). Incorporating adaptation in object recognition models captures temporal dynamics in neurophysiology and perception. bioRxiv 642777. PDF

  5. Xiao W. and Kreiman G. (2019). Gradient-free activation maximization for identifying effective stimuli. arXiv 1905.00378. PDF / Resources

  6. Kreiman G. (2019) It's a small dimensional world after all. Comment on The unreasonable effectiveness fo small neural ensembles in high-dimensional brains" by Gorban et al. Physics of Life Reviews. PDF

  7. Xiao W, Chen H, Liao Q, Poggio T. (2019). Biologically-plausible learning algorithms can scale to large datasets. ICLR. PDF

  8. Madhavan R, Bansal AK, Madsen JR, Golby AJ, Tierney TS, Eskandar EN, Anderson WS, Kreiman G (2018). Neural interactions underlying visuomotor associations in the human brain. Cerebral Cortex. PDF / Supplementary Material / Resources

  9. Misra P, Marconi A, Petterson M, Kreiman G. (2018) Minimal memory for details in real life events. Scientific Reports, 8, 16701. PDF / Supplementary Material / Resources

  10. Tang H, Schrimpf M, Lotter W, Moerman C, Paredes A, Ortega Caro J, Hardesty W, Cox D, Kreiman G. (2018) Recurrent computations for visual pattern completion. PNAS, 115:8835-884. PDF / Supplementary Material / GitHub / Resources. PMID: 30104363

  11. Zhang M, Feng J, Ma KT, Lim JH, Zhao Q, Kreiman G. (2018) Finding any Waldo: zero-shot invariant and efficient visual search. Nature Communications, 9:3730. PDF / Supplementary Material / GitHub / Resources. PMID: 30213937

  12. Lotter W, Kreiman G, Cox D. (2018) A neural network trained to predict future video frames mimics critical properties of biological neuronal responses and perception. arXiv version: arXiv:1805.10734

  13. Zhang M, Feng J, Lim JH, Zhao Q, Kreiman G. (2018) What am I searching for? arXiv version: arXiv 1807.11926

  14. Palepu A, Premananthan CS, Azhar F, Vendrame M, Loddenkemper T, Reinsberger C, Kreiman G, Parkerson K, Sarma VS, Anderson WS. (2018). Development of automated interictal spike detector. Conf Proc IEEE Eng Med Biol Soc.

  15. Wu K, Wu E, Kreiman G (2018). Learning scene gist with convolutional neural networks to improve object recognition. IEEE Annual Conference on Information Sciences and Systems (CISS). arXiv version: arXiv:1803.01967v2 / Resources

  16. Isik I, Singer J, Madsen JR, Kanwisher N, Kreiman G. (2018) What is changing when: Decoding visual information in movies from human intracranial recordings. Neuroimage, 180:147-159. PDF / Supplementary Material / Resources. PMID: 28823828

  17. Cheney N, Schrimpf M, Kreiman G. On the Robustness of Convolutional Neural Networks to Internal Architecture and Weight Perturbations (2017). arXiv version: arXiv:1703.08245v1

  18. Lotter W, Kreiman, G, Cox, D. (2017) Deep Predictive Coding Networks for Video Prediction and Unsupervised Learning. International Conference on Learning Representations, Toulon, France. PDF / GitHub

  19. Tang H, Kreiman G. (2017). Recognition of occluded objects. In Computational and Cognitive Neuroscience of Vision. (ed Zhao, Q). Singapore: Springer-Verlag. PDF

  20. Tang H, Singer J, Ison M, Pivazyan G, Romaine M, Frias R, Meller E, Boulin A, Carroll JD, Perron V, Dowcett S, Arlellano M, Kreiman G. (2016). Predicting episodic memory formation for movie events. Scientific Reports, 6:30175. PDF / Supplementary Material / Resources. PMID: 27686330

  21. Lotter, W, Kreiman, G, Cox, D. (2016.) Unsupervised representation learning using predictive generative works. International Conference on Learning Representations, Puerto Rico. PDF

  22. Gomez-Laberge C, Smolyanskaya A, Nassi JJ, Kreiman G, Born R. (2016). Bottom-Up and Top-Down Input Augment the Variability of Cortical Neurons. Neuron, 91:540-547. PDF / Supplementary Material / PMID: 27427459

  23. Kreiman G. (2016). A null model for cortical representations with grandmothers galore. Language, Cognition and Neuroscience, 32, 274-285. PDF PMID: 29204455

  24. Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J. (2016). f-divergence Cutoff Index to Simultaneously Identify Differential Expression in the Integrated Transcriptome and Proteome. Nucleic Acids Research, 44:e97. PDF / Supplementary Material / PMID: 26980280

  25. Tang H, Yu H, Chou C, Crone N, Madsen J, Anderson W, Kreiman G. (2016). Cascade of neural processing orchestrates cognitive control in human frontal cortex. eLife, 5:e12352. PDF / Supplementary Material / Resources / PMID: 26888070

  26. Miconi T, Groomes L, Kreiman G. (2016). There's Waldo! A Normalization Model of Visual Search Predicts Single-Trial Human Fixations in an Object Search Task. Cerebral Cortex, 26:3064-3082. PDF / Supplementary Material / Resources / PMID: 26092221

  27. Singer JM, Madsen JR, Anderson WS, Kreiman G. (2015). Sensitivity to Timing and Order in Human Visual Cortex. Journal of Neurophysiology, 113:1656-1669. PDF PMID: 25429116

  28. Madhavan R, Millman D, Tang H, Crone NE, Lenz F, Tierney T, Madsen JR, Kreiman G, Anderson WS. (2015). Decrease in gamma-band activity tracks sequence learning. Frontiers in Systems Neuroscience, 8:222. PDF / Supplementary Material / PMID: 25653598

  29. Tang H, Buia C, Madhavan R, Madsen J, Anderson W, Crone N, Kreiman G. (2014). Spatiotemporal dynamics underlying object completion in human ventral visual cortex. Neuron, 83:736-748. PDF / Supplementary Material 1 / Supplementary Material 2 / PMID: 25043420

  30. Fried I, Rutishauser U, Cerf M, Kreiman G. (2014). Single Neuron Studies of the Human Brain, Probing Cognition. MIT Press. BOOK.

  31. Bansal A. (2014). Human Single Unit Activity for Reach and Grasp Motor Prostheses. In Single Neuron Studies of the Human Brain. (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch 17, MIT Press. PDF

  32. Rutishauser U, Cerf M, Kreiman G. (2014). Data analysis techniques for human microwire recordings: spike detection and sorting, decoding, relation between units and local field potentials. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch 6, MIT Press. PDF

  33. Mormann F, Ison M, Quiroga RQ, Koch C, Fried I, Kreiman G. (2014). Visual cognitive adventures of single neurons in the human medial temporal lobe. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch. 8, MIT Press. PDF

  34. Kreiman G, Rutishauser U, Cerf M, Fried I. (2014). The next ten years and beyond. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch. 19, MIT Press. PDF

  35. Kreiman G. (2014). Neural correlates of consciousness: perception and volition. In Cognitive Neuroscience, Vol. V (ed Gazzaniga M). Ch 68, MIT Press. PDF

  36. Malik A,Vierbuchen T, Hemberg M, Rubin A, Ling E, Couch C, Stroud H, Spiegel I, Farh K, Harmin D, Greenberg M. (2014).Genome-wide identification and characterization of functional neuronal activity–dependent enhancers. Nature Neuroscience, 17:1330-1339. PDF PMID: 25195102

  37. Prabakaran S, Hemberg M, Chauhan R, Winter D, Tweedie-Cullen R, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA. (2014). Quantitative Profiling of Peptides from RNAs classified as non-coding. Nature Communications, 5:5429. PDF / SUPPLEMENTARY PDF PMID: 25403355

  38. Pinto A, Fernandez I, Peters J, Mananaro S, Singer J, Vendrame M, Prabhu S, Loddenkemper T, Kothare S. (2014). Localization of sleep spindles, k-complexes, and vertex waves with subdural electrodes in children. Clinical Neurophysiology 4:367-74. PDF PMID: 25083850

  39. Kim T, Hemberg M, Gray J. (2014). Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Invited essay for the Epigenetics textbook (2nd edition). Cold Spring Harbor Press. PDF PMID: 25561718

  40. Nassi J, Gomez-Laberge C, Kreiman G, Born R (2014). Corticocortical feedback increases the spatial extent of normalization. Frontiers in Systems Neuroscience, 8:105. PDF / SUPPLEMENTARY PDF PMID: 24910596

  41. Singer J, Kreiman G. (2014). Short Temporal Asynchrony Disrupts Visual Object Recognition. Journal of Vision, 12,14. PDF / Resources / PMID: 24819738

  42. Frost B, Hemberg M, Lewis J, Feany M. (2014). Tau promotes neurodegeneration through global chromatin relaxation. Nature Neuroscience, 17, 357-366. PDF PMID: 24464041

  43. Bansal A, Madhavan R, Agam Y, Golby A, Madsen J, Kreiman G. (2014). Neural Dynamics Underlying Target Detection in the Human Brain. Journal of Neuroscience, 34, 3042-3055. PDF PMID: 24553944

  44. Kreiman G. (2013). Mind the quantum? Trends in Cognitive Science, 17(3),109. PDF
  45. Kreiman G. (2013). Computational Models of Visual Object Recognition. In Principles of Neural Coding (eds Panzeri S, Quiroga R). Ch 29, CRC Press. PDF

  46. Murugan R, Kreiman G. (2012). Theory on the coupled stochastic dynamics of transcription and splice-site recognition. PLoS Computational Biology, 8, 1-13, e1002747. PDF PMID: 23133354

  47. Bansal A, Singer J, Anderson WS, Golby A, Madsen JR, Kreiman G. (2012). Temporal stability of visually selective responses in intracranial field potentials recorded from human occipital and temporal lobes. Journal of Neurophysiology, 108:3073-3086. PDF PMID: 22956795

  48. Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G. (2012). Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research, 40:7858-7869. PDF / SUPPLEMENTARY PDF / RESOURCES PMID: 2268462

  49. Burbank KS, Kreiman G. (2012). Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections. PLoS Computational Biology, 8:1-16. PDF PMID:22396630

  50. Bansal AK,Truccolo W, Vargas-Irwin CE, Donoghue J. (2012). Decoding 3D reach and grasp from hybrid signals in motor and premotor cortices: spikes, multiunit activity, and local field potentials. Journal of Neurophysiology, 107:1337-55. PDF PMID:22157115

  51. Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK, Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME. (2012). Bhlhb5 and prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron, 73:292-303. PDF PMID:22284184

  52. Kriegeskorte N, Kreiman G. (2011). Visual Population Codes, Towards a Common Multivariate Framework for Cell Recording and Functional Imaging. MIT Press. BOOK / RESOURCES

  53. Burbank K, Kreiman G. (2011). Introduction to the Anatomy and Function of Visual Cortex. In Understanding Visual Population codes (eds Kriegeskorte N, Kreiman G). Ch 17, MIT Press. PDF

  54. Singer J, Kreiman G. (2011). Introduction to Statistical Learning and Pattern Classification. In Understanding Visual Population codes (eds Kriegeskorte N, Kreiman G). Ch 18, MIT Press. PDF

  55. Meyers E, Kreiman G. (2011). Tutorial on Pattern Classification in Cell Recording. In Understanding Visual Population Codes (eds Kriegeskorte N, Kreiman G). Ch 19, MIT Press. PDF

  56. Cohen S, Gabel HW, Hemberg M, Hutchinson AN, Sadacca LA, Ebert DH, Harmin DA, Greenberg RS, Verdine VK, Zhou Z, Wetsel WC, West AE, Greenberg ME. (2011). Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function. Neuron, 72, 72-85. PDF PMID: 21982370

  57. Tang H, Kreiman G. (2011). Face Recognition: Vision and Emotions beyond the Bubble. Current Biology, 21:21. PDF PMID:22075428

  58. Kreiman G, Maunsell J. (2011). Nine criteria for a measure of scientific output. Frontiers in Computational Neuroscience, 5:48. PDF. PMID:22102840

  59. Kreiman G. (2011). Literary inspiration. Nature, 475:453-454. PDF

  60. Murugan R, Kreiman G. (2011). On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophysical Journal, 101:1297-1306. PDF PMID:21943410

  61. Hemberg M, Kreiman G. (2011). Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Research, 39:7092-7102 PDF PMID:21622661

  62. Fried I, Mukamel R, Kreiman G. (2011). Internally Generated Preactivation of Single Neurons in Human Medial Frontal Cortex Predicts Volition. Neuron, 69: 548-562. PDF / SUPPLEMENTARY PDF PMID: 21315264

  63. Anderson WS, Kreiman, G. (2011). Neuroscience: What We Cannot Model, We Do Not Understand. Current Biology, 21:R124-R125. PDF PMID:21315264

  64. Chen LL, Madhavan R, Rapoport B, Anderson WS. (2011). A method for real-time cortical oscillation detection and phase-locked stimulation. Conf Proc IEE Eng Med Biol Soc 2011, 3087-3090. PDF PMID:22254992

  65. Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. (2010). Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. PLoS One, 5:e10870. PDF PMID:20523734

  66. Blumberg J, Kreiman G. (2010). How cortical neurons help us see: visual recognition in the human brain. Journal of Clinical Investigation, 120:3054-3063. PDF PMID:20811161

  67. Agam Y, Liu H, Pappanastassiou A, Buia C, Golby AJ, Madsen JR, Kreiman G. (2010). Robust selectivity to two-object images in human visual cortex. Current Biology, 20:872-879. PDF / SUPPLEMENTARY PDF / RESOURCES PMID:20417105

  68. Kim TK*, Hemberg M*, Gray JM*, Costa A, Bear DM, Wu J, Harmin DA, Laptewicz, M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME. (2010). Widespread transcription at thousands of enhancers during activity-dependent gene expression in neurons. Nature, 465:182-187. (* = equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:20393465

  69. Singer JM, Sheinberg DL. (2010). Temporal cortex neurons encode articulated actions as slow sequences of integrated poses. Journal of Neuroscience, 30:3133-3145. PDF PMID:20181610

  70. Quian Quiroga R, Kreiman G. (2010). Measuring sparseness in the brain. Psychological Review, 11:291-297. PDF PMID:20063978

  71. Stahlberg A, Bengtsson M, Hemberg M, Semb H. (2009). Quantitative transcription factor analysis of undifferentiated single human embryonic stem cells. Clinical Chemistry, 55: 2162-70. PDF PMID: 19815608.

  72. Liu H, Agam Y, Madsen J, Kreiman G. (2009). Timing, timing, timing: Fast decoding of object information from intracranial field potentials in human visual cortex. Neuron, 62:281-290. PDF / SUPPLEMENTARY PDF / RESOURCES PMID:19409272

  73. Rasch M, Logothetis NK, Kreiman G. (2009). From neurons to circuits: linear estimation of local field potentials. Journal of Neuroscience, 29:13785-13796. PDF / RESOURCES PMID:19889990

  74. Horng S, Kreiman G, Ellsworth C, Page D, Blank M, Milen K, Sur M. (2009). Differential Gene Expression in the Developing Lateral Geniculate Nucleus and Medial Geniculate Nucleus Reveals Novel Roles for Zic4 and Foxp2 in Visual and Auditory Pathway Development. Journal of Neuroscience, 29:13672-13683. PDF PMID:19864579

  75. Singer J, Kreiman G. (2009). Toward unmasking the dynamics of visual perception. Neuron, 64:446-447. PDF PMID:19945387

  76. Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME. (2008). Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron, 60:1022-1038.PDF PMID:19109909

  77. Meyers E, Freedman D, Kreiman G, Miller E, Poggio T. (2008). Dynamic Population Coding of Category Information in ITC and PFC. Journal of Neurophysiology, 100:1407-1419 PDF / SUPPLEMENTARY PDF / RESOURCES PMID:18562555

  78. Quian Quiroga R, Kreiman G, Koch C, Fried I. (2008). Sparse but not "Grandmother Cell" coding in the medial temporal lobe. Trends in Cognitive Science, 12:87-91. PDF PMID:18262826

  79. Leamey C, Glendining K, Kreiman G, Kang N, Kuan H, Fassler R, Sawatari A, Tonegawa S, Sur M. (2008). Differential Gene Expression between Sensory Neocortical Areas: Potential Roles for Ten_m3 and Bcl6 in Patterning Visual and Somatosensory Pathways. Cerebral Cortex, 18:53-66. PDF PMID:17478416

  80. Kreiman G. (2007). Single neuron approaches to human vision and memories. Current Opinion in Neurobiology, 17:471-475. PDF PMID: 17703936

  81. Serre T, Kreiman G, Kouh M, Cadieu C, Knoblich U, Poggio T. (2007). A quantitative theory of immediate visual recognition. Progress In Brain Research, 165C:33-56. PDF / RESOURCES PMID:17925239

  82. Kreiman G. (2007). Brain science: from the very large to the very small. Current Biology, 17:R768-R770. PDF PMID:17803929

  83. Tropea D, Kreiman G, Lyckman A, Mukherjee S, Yu H, Horng S, Sur M. (2006). Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex. Nature Neuroscience, 9:660-668 PDF / SUPPLEMENTARY PDF / RESOURCES PMID: 16633343

  84. Kreiman G*, Hung C*, Quiroga R, Kraskov A, Poggio T, DiCarlo J. (2006). Object selectivity of local field potentials and spikes in the macaque inferior temporal cortex Neuron, 49:433-445. (*=equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:16446146

  85. Hung C*, Kreiman G*, Poggio T, DiCarlo J. (2005). Fast read-out of object identity from macaque inferior temporal cortex. Science, 310:863-866. (*=equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:16272124

  86. Quian Quiroga R, Reddy L, Kreiman G, Koch C, Fried I. (2005). Invariant visual representation by single neurons in the human brain. Nature, 435:1102-1107. PDF / SUPPLEMENTARY PDF PMID:15973409

  87. Kreiman G, Fried I, Koch C. (2005). Responses of single neurons in the human brain during flash suppression. In Binocular Rivalry (eds Blake R, Alais D). Ch 12, MIT Press. PDF

  88. Crick F, Koch C, Kreiman G, Fried I. (2004). Consciousness and Neurosurgery. Neurosurgery, 55:272-282. PDF PMID: 15271233

  89. Yeo G, Holste D, Kreiman G, Burge C. (2004). Variation in alternative splicing across human tissues. Genome Biology, 5:R74. PDF / RESOURCES PMID: 15461793

  90. Kreiman G. (2004). Neural coding: computational and biophysical perspectives. Physics of Life Reviews, 2:71-102. PDF

  91. Kreiman G. (2004). Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Research, 32:2889-2900. PDF/ RESOURCES PMID: 15155858

  92. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. (2004). A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences USA, 101:6062-6067. PDF SUPPLEMENTARY PDF / RESOURCES PMID: 15075390

  93. Kreiman G, Fried I, Koch C. (2002). Single neuron correlates of subjective vision in the human medial temporal lobe. Proceedings of the National Academy of Sciences USA, 99:8378-8383. PDF PMID: 12034865

  94. Rees G, Kreiman G, Koch C. (2002). Neural correlates of consciousness in humans. Nature Reviews Neuroscience, 3:261-270. PDF PMID: 11967556

  95. Krahe R, Kreiman G, Gabbiani F, Koch C, Metzner W. (2002). Stimulus encoding and feature extraction by multiple pyramidal cells in the hindbrain of weakly electric fish. Journal of Neuroscience, 22:2374-2382. PDF PMID: 11896176

  96. Zirlinger M, Kreiman G, Anderson D. (2001). Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid sub-nuclei. Proceedings of the National Academy of Sciences USA, 98:5270-5275. PDF / RESOURCES PMID: 11320257

  97. Kreiman G. (2001). Moveo ergo sum. BioEssays, 23:662. PDF

  98. Kreiman G, Koch C, Fried I. (2000). Imagery neurons in the human brain. Nature, 408:357-361. PDF PMID: 11099042

  99. Kreiman G, Koch C, Fried I. (2000). Category-specific visual responses of single neurons in the human medial temporal lobe. Nature Neuroscience, 3:946-953. PDF PMID: 10966627

  100. Kreiman G, Krahe R, Metzner W, Koch C, Gabbiani F. (2000). Robustness and Variability of Neuronal Coding by Amplitude Sensitive Afferents in the Weakly Electric Fish Eigenmannia. Journal of Neurophysiology, 84:189-204. PDF PMID: 10899196

  101. Ouyang Y, Rosenstein A, Kreiman G, Schuman EM, Kennedy, MB. (1999). Tetanic stimulation leads to increased accumulation of Ca2+ calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons. Journal of Neuroscience, 19:7823-7833. PDF PMID: 1047968

  102. Inon de Iannino N, Briones G, Kreiman G, Ugalde, R. (1996). Characterization of the biosynthesis of betha(1-2) cyclc glucan in R. Freddii. Cellular and Molecular Biology, 42:617-629. PDF PMID: 8832091

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