Kreiman Lab Publications

 

 

  1. Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J. (2016) f-divergence Cutoff Index to Simultaneously Identify Differential Expression in the Integrated Transcriptome and Proteome. Nucleic Acids Research. In Press.
  2. Tang H, Yu H, Chou C, Crone N, Madsen J, Anderson W, Kreiman G (2016) Cascade of neural processing orchestrates cognitive control in human frontal cortex. eLife 2016;5:e12352. PDF
  3. Miconi, T., Groomes, L., Kreiman, G (2015). There's Waldo! A Normalization Model of Visual Search Predicts Single-Trial Human Fixations in an Object Search Task. Cerebral cortex. PDF
  4. Singer JM, Madsen JR, Anderson WS, Kreiman G (2015). Sensitivity to Timing and Order in Human Visual Cortex. Journal of Neurophysiology 113:1656-1669. PDF
  5. Madhavan R, Millman D, Tang H, Crone NE, Lenz F, Tierney T, Madsen JR, Kreiman G, Anderson WS (2015). Decrease in gamma-band activity tracks sequence learning. Frontiers in Systems Neuroscience 8: 222. PDF
  6. Tang H, Buia C, Madhavan R, Madsen J, Anderson W, Crone N, Kreiman G. (2014). Spatiotemporal dynamics underlying object completion in human ventral visual cortex. Neuron 83:736-748. PDF 
  7. Fried I, Rutishauser U, Cerf M, Kreiman G (2014). Single Neuron Studies of the Human Brain, Probing Cognition. MIT Press. BOOK.

  8. Bansal A. Human Single Unit Activity for Reach and Grasp Motor Prostheses.In Single Neuron Studies of the Human Brain. (eds I Fried, U Rutishauser, M Cerf, & G Kreiman) (MIT Press, 2014). PDF (proofs)
  9. Rutishauser U., Cerf M. & Kreiman G. Data analysis techniques for human microwire recordings: spike detection and sorting, decoding, relation between units and local field potentials. In Single neuron studies of the human brain. Probing cognition. (eds I Fried, U Rutishauser, M Cerf, & G Kreiman) Ch 6, (MIT Press, 2014). PDF (proofs)
  10. Mormann F, Ison M, Quiroga RQ, Koch C, Fried I, Kreiman G. Visual cognitive adventures of single neurons in the human medial temporal lobe. In Single neuron studies of the human brain. Probing cognition. (eds I Fried, U Rutishauser, M Cerf, & G Kreiman) Ch. 8, (MIT Press, 2014). PDF ( proofs)
  11. Kreiman G., Rutishauser U, Cerf M. & Fried I. The next ten years and beyond. In Single neuron studies of the human brain. Probing cognition. (eds I Fried, U Rutishauser, M Cerf, & G Kreiman) Ch. 19, (MIT Press, 2014). PDF (proofs)
  12. Kreiman G. Neural correlates of consciousness: perception and volition. In Cognitive Neuroscience Vol. V (ed M Gazzaniga) (MIT Press, 2014). PDF (proofs)
  13. Malik A,Vierbuchen T, Hemberg M, Rubin A, Ling E, Couch C, Stroud H, Spiegel I, Farh K, Harmin D, Greenberg M. (2014).Genome-wide identification and characterization of functional neuronal activity–dependent enhancers. Nature Neuroscience1330-1339. PDF
  14. Prabakaran S, Hemberg M, Chauhan R, Winter D, Tweedie-Cullen R, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA (2014). Quantitative Profiling of Peptides from RNAs classified as non-coding. Nature Communications, 5:5429. PDF
  15. Pinto, A. Fernandez, I. Peters, J. Mananaro, S. Singer, J. Vendrame, M. Prabhu, S. Loddenkemper, T. Kothare, S. Localization of sleep spindles, k-complexes, and vertex waves with subdural electrodes in children. Clinical Neurophysiology4:367-74 (2014).
  16. Kim T, Hemberg M, Gray J (2014). Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Invited essay for the Epigenetics textbook (2nd edition), Cold Spring Harbor Press.
  17. Nassi J, Gomez-Laberge C, Kreiman G, Born R (2014). Corticocortical feedback increases the spatial extent of normalization. Frontiers in Systems Neuroscience 8:105. PDF
  18. Singer J. and Kreiman G (2014). Short Temporal Asynchrony Disrupts Visual Object Recognition. Journal of Vision. 12:14. PDF
  19. Frost B, Hemberg M, Lewis J, Feany M (2014). Tau promotes neurodegeneration through global chromatin relaxation. Nature Neuroscience 17:357-366. PDF.
  20. Bansal A, Madhavan R, Agam Y, Golby A, Madsen J, Kreiman G (2014). Neural Dynamics Underlying Target Detection in the Human Brain. Journal of Neuroscience 34:3042-3055. PDF
  21. Kreiman G (2013). Mind the quantum? Trends in Cognitive Science, 17(3): 109. PDF
  22. Kreiman G. Computational Models of Visual Object Recognition. In Principles of neural coding (eds S Panzeri & R Quiroga) (CRC Press, 2013). PDF (proofs)

  23. Murugan, R and Kreiman, G (2012). Theory on the coupled stochastic dynamics of transcription and splice-site recognition. PLoS Computational Biology, 8:1-13, e1002747. PDF

  24. Bansal A, Singer J, Anderson WS, Golby, A, Madsen JR, Kreiman G (2012). Temporal stability of visually selective responses in intracranial field potentials recorded from human occipital and temporal lobes. Journal of Neurophysiology 108:3073-3086. PDF
  25. Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G (2012). Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research 40:7858-7869. PDF PMID: 22684627
  26. Burbank KS, Kreiman GK (2012). Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections. PLoS Computational Biology 8:1-16. PDF PMID:22396630
  27. Bansal AK,Truccolo W, Vargas-Irwin CE, Donoghue J (2012). Decoding 3D reach and grasp from hybrid signals in motor and premotor cortices: spikes, multiunit activity, and local field potentials. Journal of Neurophysiology 107:1337-55. PDF PMID:22157115
  28. Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK,Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME (2012). Bhlhb5 and prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron 73: 292-303. PDF PMID:22284184
  29. Kriegeskorte N, Kreiman G (2011). Visual Population Codes, Towards a Common Multivariate Framework for Cell Recording and Functional Imaging. MIT Press. BOOK

  30. Kendra Burbank, Gabriel Kreiman. Introduction to the Anatomy and Function of Visual Cortex. Chapter 17 in "Understanding visual population codes" MIT Press 2011, edited by Kriegeskorte and Kreiman. PDF (proofs)

  31. Jed Singer, Gabriel Kreiman. Introduction to Statistical Learning and Pattern Classification. Chapter 18 in "Understanding visual population codes" MIT Press 2011, edited by Kriegeskorte and Kreiman. PDF (proofs)

  32. Ethan Meyers, Gabriel Kreiman. Tutorial on Pattern Classification in Cell Recording. Chapter 19 in "Understanding visual population codes" MIT Press 2011, edited by Kriegeskorte and Kreiman. PDF (proofs)

  33. Cohen S, Gabel HW, Hemberg M, Hutchinson AN, Sadacca LA, Ebert DH, Harmin DA, Greenberg RS, Verdine VK, Zhou Z, Wetsel WC, West AE, Greenberg ME (2011). Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function. Neuron 72:72-85. PDF PMID: 21982370

  34. Tang H and Kreiman G. (2011). Face Recognition: Vision and Emotions beyond the Bubble. Current Biology 21:21. PDF PMID:22075428
  35. Kreiman G and Maunsell J. (2011). Nine criteria for a measure of scientific output. Frontiers in Computational Neuroscience 5:48. PDF. PMID:22102840
  36. Kreiman G (2011). Literary inspiration. Nature 475:453-454. PDF
  37. Murugan R and Kreiman G. (2011) On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophysical Journal 101:1297-1306 PDF PMID:21943410
  38. Hemberg M and Kreiman G (2011). Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Research. 39: 7092-7102 PDF PMID:21622661
  39. Fried I, Mukamel R, Kreiman G. (2011). Internally Generated Preactivation of Single Neurons in Human Medial Frontal Cortex Predicts Volition. Neuron. 69: 548-562. PDF Video PMID: 21315264
  40. Anderson, WS and Kreiman, G. (2011). Neuroscience: What We Cannot Model, We Do Not Understand. Current Biology. 21: R124-R125. PDF PMID:21315264
  41. Chen, LL, Madhavan, R, Rapoport, B and Anderson, WS. (2011). A method for real-time cortical oscillation detection and phase-locked stimulation. Conf Proc IEE Eng Med Biol Soc 2011, 3087-3090. PDF PMID:22254992
  42. Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE (2010). Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. PLoS One 5(5):e10870.PDF PMID:20523734
  43. Blumberg, J., and Kreiman, G. (2010). How cortical neurons help us see: visual recognition in the human brain. Journal of Clinical Investigation 120:3054-3063. PDF PMID:20811161
  44. Agam Y, Liu H, Pappanastassiou A, Buia C, Golby AJ, Madsen JR, Kreiman, G. (2010). Robust selectivity to two-object images in human visual cortex. Current Biology 20:872-879. PDF . Supplementary Information Web PMID:20417105
  45. Kim TK*, Hemberg M*, Gray JM*, Costa A, Bear DM, Wu J, Harmin DA, Laptewicz, M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME. (2010). Widespread transcription at thousands of enhancers during activity-dependent gene expression in neurons. (* = equal contribution) Nature 465:182-187.PDF. Supplementary Information. Web PMID:20393465
  46. Singer JM, Sheinberg DL (2010). Temporal cortex neurons encode articulated actions as slow sequences of integrated poses. Journal of Neuroscience 30, 3133-3145. PDF PMID:20181610
  47. Quian Quiroga R, Kreiman G (2010). Measuring sparseness in the brain. Psychological Review, 11:291-297. PDF PMID:20063978
  48. Stahlberg A, Bengtsson M, Hemberg M, Semb H (2009). Quantitative transcription factor analysis of undifferentiated single human embryonic stem cells. Clinical Chemistry 55(12): 2162-70. Epub 2009 Oct 8. PMID: 19815608.
  49. Liu H, Agam Y, Madsen J, Kreiman G. (2009) Timing, timing, timing: Fast decoding of object inforrmation from intracranial field potentials in human visual cortex. Neuron 62:281-290. PDF. Supplementary Information Web PMID:19409272
  50. Rasch M, Logothetis NK, Kreiman G (2009). From neurons to circuits: linear estimation of local field potentials. Journal of Neuroscience 29:13785-13796.PDF PMID:19889990
  51. Horng S, Kreiman G, Ellsworth C, Page D, Blank M, Milen K, Sur M (2009). Differential Gene Expression in the Developing Lateral Geniculate Nucleus and Medial Geniculate Nucleus Reveals Novel Roles for Zic4 and Foxp2 in Visual and Auditory Pathway Development. Journal of Neuroscience 29:13672-13683. PDF PMID:19864579
  52. Singer J, Kreiman G (2009). Toward unmasking the dynamics of visual perception. Neuron 64:446-447.PDF PMID:19945387
  53. Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME (2008). Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron 60: 1022-1038.PDF PMID:19109909
  54. Meyers E, Freedman D, Kreiman G, Miller E, Poggio T (2008). Dynamic Population Coding of Category Information in ITC and PFC. Journal of Neurophysiology 100:1407-1419 PDF. Supplementary Information Web PMID:18562555
  55. Quian Quiroga R, Kreiman G, Koch C, Fried I (2008), Trends in Cognitive Science 12:87-91. PDF PMID:18262826
  56. Leamey C, Glendining K, Kreiman G, Kang N, Kuan H, Fassler R, Sawatari A, Tonegawa S, Sur M. (2008). Differential Gene Expression between Sensory Neocortical Areas: Potential Roles for Ten_m3 and Bcl6 in Patterning Visual and Somatosensory Pathways. Cerebral Cortex, 18:53-66. PDF PMID:17478416
  57. Kreiman G (2007). Single neuron approaches to human vision and memories. Current Opinion in Neurobiology, 17:471-475. PDF
  58. Serre T, Kreiman G, Kouh M, Cadieu C, Knoblich U, Poggio T (2007). A quantitative theory of immediate visual recognition. Progress In Brain Research 165C:33-56. PDF. Supplementary Information PMID:17925239
  59. Kreiman G (2007) Brain science: from the very large to the very small. Current Biology 17:R768-R770. PDF PMID:17803929
  60. Tropea D, Kreiman G, Lyckman A, Mukherjee S, Yu H, Horng S, Sur M. (2006) Distinct gene systems mediating activity-dependent plasticity in visual cortex. Nature Neuroscience 9:660-668 PDF . Supplementary Information Web
  61. Kreiman G*, Hung C*, Quiroga R, Kraskov A, Poggio T., DiCarlo J. (2006). Object selectivity of local field potentials and spikes in the macaque inferior temporal cortex Neuron 49:433-445 (*=equal contribution) PDF .Supplementary Information Web PMID:16446146
  62. Hung C*, Kreiman G*, Poggio T, DiCarlo J. (2005) Fast read-out of object identity from macaque inferior temporal cortex. Science, 310:863-866. (*=equal contribution) PDF. Supplementary Information Web PMID:16272124
  63. Quian Quiroga R, Reddy L, Kreiman G, Koch C, Fried I (2005) Invariant visual representation by single neurons in the human brain. Nature, 435:1102-1107. PDF Supplementary Information PMID:15973409
  64. Responses of single neurons in the human brain during flash suppression. Chapter 12 In "Binocular Rivalry", MIT Press, edited by Randolph Blake and David Alais (2005) PDF
  65. Crick F, Koch C, Kreiman G, Fried I (2004) Consciousness and Neurosurgery. Neurosurgery 55:272-282. PDF PMID: 15271233
  66. Yeo G, Holste D, Kreiman G, Burge C (2004). Variation in alternative splicing across human tissues. Genome Biology 5:R74. PDF Supplementary Information PMID: 15461793
  67. Kreiman G (2004). Neural coding: computational and biophysical perspectives. Physics of Life Reviews 2:71-102. PDF
  68. Kreiman G (2004) Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Research, 32:2889-2900. PDF. Supplementary Information PMID: 15155858
  69. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences USA, 101:6062-6067. PDF. Supplementary Information. GNF Symatlas PMID: 15075390
  70. Kreiman G, Fried I , Koch C (2002) Single neuron correlates of subjective vision in the human medial temporal lobe. Proceedings of the National Academy of Sciences USA, 99:8378-8383. PDF PMID: 12034865
  71. Rees G, Kreiman G, Koch C (2002). Neural correlates of consciousness in humans. Nature Reviews Neuroscience, 3:261-270. PDF PMID: 11967556
  72. Krahe R, Kreiman G, Gabbiani F, Koch C, Metzner W (2002). Stimulus encoding and feature extraction by multiple pyramidal cells in the hindbrain of weakly electric fish. Journal of Neuroscience, 22:2374-2382. PDF PMID: 11896176
  73. Zirlinger M, Kreiman G, Anderson D (2001). Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid sub-nuclei. Proceedings of the National Academy of Sciences USA, 98:5270-5275. PDF PMID: 11320257
  74. Kreiman G (2001), Moveo ergo sum. BioEssays. 23:662. PDF
  75. Kreiman G, Koch C, Fried I (2000). Imagery neurons in the human brain. Nature, 408:357-361. PDF PMID: 11099042
  76. Kreiman G, Koch C, Fried I (2000). Category-specific visual responses of single neurons in the human medial temporal lobe. Nature Neuroscience, 3:946-953. PDF PMID: 10966627
  77. Kreiman G, Krahe R, Metzner W, Koch C, Gabbiani F (2000). Robustness and Variability of Neuronal Coding by Amplitude Sensitive Afferents in the Weakly Electric Fish Eigenmannia. Journal of Neurophysiology, 84:189-204. PDF PMID: 10899196
  78. Ouyang Y, Rosenstein A, Kreiman G, Schuman EM, Kennedy, MB (1999). Tetanic stimulation leads to increased accumulation of Ca2+ calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons. Journal of Neuroscience, 19:7823-7833. PDF PMID: 1047968
  79. Inon de Iannino N, Briones G, Kreiman G, Ugalde, R (1996). Characterization of the biosynthesis of betha(1-2) cyclc glucan in R. Freddii. Cellular and Molecular Biology, 42:617-629. PDF PMID: 8832091
Top