Kreiman Lab Publications

 

 

  1. Tang H, Kreiman G. (2017). Recognition of occluded objects. In Computational and Cognitive Neuroscience of Vision. (ed Zhao, Q). Singapore: Springer-Verlag. PDF
  2. Tang H, Singer J, Ison M, Pivazyan G, Romaine M, Frias R, Meller E, Boulin A, Carroll JD, Perron V, Dowcett S, Arlellano M, Kreiman G. (2016). Predicting episodic memory formation for movie events. Scientific Reports, 6:30175. PDF PMID: 27686330
  3. Gomez-Laberge C, Smolyanskaya A, Nassi JJ, Kreiman G, Born R. (2016). Bottom-Up and Top-Down Input Augment the Variability of Cortical Neurons. Neuron, 91:540-547. PDF / SUPPLEMENTARY PDF PMID: 27427459
  4. Kreiman G. (2016). A null model for cortical representations with grandmothers galore. Language, Cognition and Neuroscience, In Press. PDF
  5. Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J. (2016). f-divergence Cutoff Index to Simultaneously Identify Differential Expression in the Integrated Transcriptome and Proteome. Nucleic Acids Research, 44:e97. PDF / SUPPLEMENTARY PDF PMID: 26980280
  6. Tang H, Yu H, Chou C, Crone N, Madsen J, Anderson W, Kreiman G. (2016). Cascade of neural processing orchestrates cognitive control in human frontal cortex. eLife, 5:e12352. PDF / SUPPLEMENTARY PDF PMID: 26888070
  7. Miconi T, Groomes L, Kreiman G. (2015). There's Waldo! A Normalization Model of Visual Search Predicts Single-Trial Human Fixations in an Object Search Task. Cerebral Cortex, 26:3064-3082. PDF / SUPPLEMENTARY PDF PMID: 26092221
  8. Singer JM, Madsen JR, Anderson WS, Kreiman G. (2015). Sensitivity to Timing and Order in Human Visual Cortex. Journal of Neurophysiology, 113:1656-1669. PDF PMID: 25429116
  9. Madhavan R, Millman D, Tang H, Crone NE, Lenz F, Tierney T, Madsen JR, Kreiman G, Anderson WS. (2015). Decrease in gamma-band activity tracks sequence learning. Frontiers in Systems Neuroscience, 8:222. PDF / SUPPLEMENTARY PDF PMID: 25653598
  10. Tang H, Buia C, Madhavan R, Madsen J, Anderson W, Crone N, Kreiman G. (2014). Spatiotemporal dynamics underlying object completion in human ventral visual cortex. Neuron, 83:736-748. PDF / SUPPLEMENTARY 1 / SUPPLEMENTARY 2 PMID: 25043420
  11. Fried I, Rutishauser U, Cerf M, Kreiman G. (2014). Single Neuron Studies of the Human Brain, Probing Cognition. MIT Press. BOOK.

  12. Bansal A. (2014). Human Single Unit Activity for Reach and Grasp Motor Prostheses. In Single Neuron Studies of the Human Brain. (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch 17, MIT Press. PDF
  13. Rutishauser U, Cerf M, Kreiman G. (2014). Data analysis techniques for human microwire recordings: spike detection and sorting, decoding, relation between units and local field potentials. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch 6, MIT Press. PDF
  14. Mormann F, Ison M, Quiroga RQ, Koch C, Fried I, Kreiman G. (2014). Visual cognitive adventures of single neurons in the human medial temporal lobe. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch. 8, MIT Press. PDF
  15. Kreiman G, Rutishauser U, Cerf M, Fried I. (2014). The next ten years and beyond. In Single neuron studies of the human brain. Probing cognition (eds Fried I, Rutishauser U, Cerf M, Kreiman, G). Ch. 19, MIT Press. PDF
  16. Kreiman G. (2014). Neural correlates of consciousness: perception and volition. In Cognitive Neuroscience, Vol. V (ed Gazzaniga M). Ch 68, MIT Press. PDF
  17. Malik A,Vierbuchen T, Hemberg M, Rubin A, Ling E, Couch C, Stroud H, Spiegel I, Farh K, Harmin D, Greenberg M. (2014).Genome-wide identification and characterization of functional neuronal activity–dependent enhancers. Nature Neuroscience, 17:1330-1339. PDF PMID: 25195102
  18. Prabakaran S, Hemberg M, Chauhan R, Winter D, Tweedie-Cullen R, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA. (2014). Quantitative Profiling of Peptides from RNAs classified as non-coding. Nature Communications, 5:5429. PDF / SUPPLEMENTARY PDF PMID: 25403355
  19. Pinto A, Fernandez I, Peters J, Mananaro S, Singer J, Vendrame M, Prabhu S, Loddenkemper T, Kothare S. (2014). Localization of sleep spindles, k-complexes, and vertex waves with subdural electrodes in children. Clinical Neurophysiology 4:367-74. PDF PMID: 25083850
  20. Kim T, Hemberg M, Gray J. (2014). Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Invited essay for the Epigenetics textbook (2nd edition). Cold Spring Harbor Press. PDF PMID: 25561718
  21. Nassi J, Gomez-Laberge C, Kreiman G, Born R (2014). Corticocortical feedback increases the spatial extent of normalization. Frontiers in Systems Neuroscience, 8:105. PDF / SUPPLEMENTARY PDF PMID: 24910596
  22. Singer J, Kreiman G. (2014). Short Temporal Asynchrony Disrupts Visual Object Recognition. Journal of Vision, 12,14. PDF / CODE PMID: 24819738
  23. Frost B, Hemberg M, Lewis J, Feany M. (2014). Tau promotes neurodegeneration through global chromatin relaxation. Nature Neuroscience, 17, 357-366. PDF PMID: 24464041
  24. Bansal A, Madhavan R, Agam Y, Golby A, Madsen J, Kreiman G. (2014). Neural Dynamics Underlying Target Detection in the Human Brain. Journal of Neuroscience, 34, 3042-3055. PDF PMID: 24553944
  25. Kreiman G. (2013). Mind the quantum? Trends in Cognitive Science, 17(3),109. PDF
  26. Kreiman G. (2013). Computational Models of Visual Object Recognition. In Principles of Neural Coding (eds Panzeri S, Quiroga R). Ch 29, CRC Press. PDF

  27. Murugan R, Kreiman G. (2012). Theory on the coupled stochastic dynamics of transcription and splice-site recognition. PLoS Computational Biology, 8, 1-13, e1002747. PDF PMID: 23133354

  28. Bansal A, Singer J, Anderson WS, Golby A, Madsen JR, Kreiman G. (2012). Temporal stability of visually selective responses in intracranial field potentials recorded from human occipital and temporal lobes. Journal of Neurophysiology, 108:3073-3086. PDF PMID: 22956795
  29. Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G. (2012). Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research, 40:7858-7869. PDF / SUPPLEMENTARY PDF / CODE PMID: 22684627
  30. Burbank KS, Kreiman G. (2012). Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections. PLoS Computational Biology, 8:1-16. PDF PMID:22396630
  31. Bansal AK,Truccolo W, Vargas-Irwin CE, Donoghue J. (2012). Decoding 3D reach and grasp from hybrid signals in motor and premotor cortices: spikes, multiunit activity, and local field potentials. Journal of Neurophysiology, 107:1337-55. PDF PMID:22157115
  32. Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK, Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME. (2012). Bhlhb5 and prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron, 73:292-303. PDF PMID:22284184
  33. Kriegeskorte N, Kreiman G. (2011). Visual Population Codes, Towards a Common Multivariate Framework for Cell Recording and Functional Imaging. MIT Press. BOOK / CODE LINKS

  34. Burbank K, Kreiman G. (2011). Introduction to the Anatomy and Function of Visual Cortex. In Understanding Visual Population codes (eds Kriegeskorte N, Kreiman G). Ch 17, MIT Press. PDF

  35. Singer J, Kreiman G. (2011). Introduction to Statistical Learning and Pattern Classification. In Understanding Visual Population codes (eds Kriegeskorte N, Kreiman G). Ch 18, MIT Press. PDF

  36. Meyers E, Kreiman G. (2011). Tutorial on Pattern Classification in Cell Recording. In Understanding Visual Population Codes (eds Kriegeskorte N, Kreiman G). Ch 19, MIT Press. PDF

  37. Cohen S, Gabel HW, Hemberg M, Hutchinson AN, Sadacca LA, Ebert DH, Harmin DA, Greenberg RS, Verdine VK, Zhou Z, Wetsel WC, West AE, Greenberg ME. (2011). Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function. Neuron, 72, 72-85. PDF PMID: 21982370

  38. Tang H, Kreiman G. (2011). Face Recognition: Vision and Emotions beyond the Bubble. Current Biology, 21:21. PDF PMID:22075428
  39. Kreiman G, Maunsell J. (2011). Nine criteria for a measure of scientific output. Frontiers in Computational Neuroscience, 5:48. PDF. PMID:22102840
  40. Kreiman G. (2011). Literary inspiration. Nature, 475:453-454. PDF
  41. Murugan R, Kreiman G. (2011). On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophysical Journal, 101:1297-1306. PDF PMID:21943410
  42. Hemberg M, Kreiman G. (2011). Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Research, 39:7092-7102 PDF PMID:21622661
  43. Fried I, Mukamel R, Kreiman G. (2011). Internally Generated Preactivation of Single Neurons in Human Medial Frontal Cortex Predicts Volition. Neuron, 69: 548-562. PDF / SUPPLEMENTARY PDF PMID: 21315264
  44. Anderson WS, Kreiman, G. (2011). Neuroscience: What We Cannot Model, We Do Not Understand. Current Biology, 21:R124-R125. PDF PMID:21315264
  45. Chen LL, Madhavan R, Rapoport B, Anderson WS. (2011). A method for real-time cortical oscillation detection and phase-locked stimulation. Conf Proc IEE Eng Med Biol Soc 2011, 3087-3090. PDF PMID:22254992
  46. Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE. (2010). Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. PLoS One, 5:e10870. PDF PMID:20523734
  47. Blumberg J, Kreiman G. (2010). How cortical neurons help us see: visual recognition in the human brain. Journal of Clinical Investigation, 120:3054-3063. PDF PMID:20811161
  48. Agam Y, Liu H, Pappanastassiou A, Buia C, Golby AJ, Madsen JR, Kreiman G. (2010). Robust selectivity to two-object images in human visual cortex. Current Biology, 20:872-879. PDF/ SUPPLEMENTARY PDF / RESOURCES PMID:20417105
  49. Kim TK*, Hemberg M*, Gray JM*, Costa A, Bear DM, Wu J, Harmin DA, Laptewicz, M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME. (2010). Widespread transcription at thousands of enhancers during activity-dependent gene expression in neurons. Nature, 465:182-187. (* = equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:20393465
  50. Singer JM, Sheinberg DL. (2010). Temporal cortex neurons encode articulated actions as slow sequences of integrated poses. Journal of Neuroscience, 30:3133-3145. PDF PMID:20181610
  51. Quian Quiroga R, Kreiman G. (2010). Measuring sparseness in the brain. Psychological Review, 11:291-297. PDF PMID:20063978
  52. Stahlberg A, Bengtsson M, Hemberg M, Semb H. (2009). Quantitative transcription factor analysis of undifferentiated single human embryonic stem cells. Clinical Chemistry, 55: 2162-70. PDF PMID: 19815608.
  53. Liu H, Agam Y, Madsen J, Kreiman G. (2009). Timing, timing, timing: Fast decoding of object inforrmation from intracranial field potentials in human visual cortex. Neuron, 62:281-290. PDF / SUPPLEMENTARY PDF / RESOURCES PMID:19409272
  54. Rasch M, Logothetis NK, Kreiman G. (2009). From neurons to circuits: linear estimation of local field potentials. Journal of Neuroscience, 29:13785-13796. PDF PMID:19889990
  55. Horng S, Kreiman G, Ellsworth C, Page D, Blank M, Milen K, Sur M. (2009). Differential Gene Expression in the Developing Lateral Geniculate Nucleus and Medial Geniculate Nucleus Reveals Novel Roles for Zic4 and Foxp2 in Visual and Auditory Pathway Development. Journal of Neuroscience, 29:13672-13683. PDF PMID:19864579
  56. Singer J, Kreiman G. (2009). Toward unmasking the dynamics of visual perception. Neuron, 64:446-447. PDF PMID:19945387
  57. Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME. (2008). Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron, 60:1022-1038.PDF PMID:19109909
  58. Meyers E, Freedman D, Kreiman G, Miller E, Poggio T. (2008). Dynamic Population Coding of Category Information in ITC and PFC. Journal of Neurophysiology, 100:1407-1419 PDF / SUPPLEMENTARY PDF / RESOURCES PMID:18562555
  59. Quian Quiroga R, Kreiman G, Koch C, Fried I. (2008). Sparse but not "Grandmother Cell" coding in the medial temporal lobe. Trends in Cognitive Science, 12:87-91. PDF PMID:18262826
  60. Leamey C, Glendining K, Kreiman G, Kang N, Kuan H, Fassler R, Sawatari A, Tonegawa S, Sur M. (2008). Differential Gene Expression between Sensory Neocortical Areas: Potential Roles for Ten_m3 and Bcl6 in Patterning Visual and Somatosensory Pathways. Cerebral Cortex, 18:53-66. PDF PMID:17478416
  61. Kreiman G. (2007). Single neuron approaches to human vision and memories. Current Opinion in Neurobiology, 17:471-475. PDF PMID: 17703936
  62. Serre T, Kreiman G, Kouh M, Cadieu C, Knoblich U, Poggio T. (2007). A quantitative theory of immediate visual recognition. Progress In Brain Research, 165C:33-56. PDF / RESOURCES PMID:17925239
  63. Kreiman G. (2007). Brain science: from the very large to the very small. Current Biology, 17:R768-R770. PDF PMID:17803929
  64. Tropea D, Kreiman G, Lyckman A, Mukherjee S, Yu H, Horng S, Sur M. (2006). Gene expression changes and molecular pathways mediating activity-dependent plasticity in visual cortex. Nature Neuroscience, 9:660-668 PDF / SUPPLEMENTARY PDF / RESOURCES
  65. Kreiman G*, Hung C*, Quiroga R, Kraskov A, Poggio T, DiCarlo J. (2006). Object selectivity of local field potentials and spikes in the macaque inferior temporal cortex Neuron, 49:433-445. (*=equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:16446146
  66. Hung C*, Kreiman G*, Poggio T, DiCarlo J. (2005). Fast read-out of object identity from macaque inferior temporal cortex. Science, 310:863-866. (*=equal contribution) PDF / SUPPLEMENTARY PDF / RESOURCES PMID:16272124
  67. Quian Quiroga R, Reddy L, Kreiman G, Koch C, Fried I. (2005). Invariant visual representation by single neurons in the human brain. Nature, 435:1102-1107. PDF / SUPPLEMENTARY PDF PMID:15973409
  68. Kreiman G, Fried I, Koch C. (2005). Responses of single neurons in the human brain during flash suppression. In Binocular Rivalry (eds Blake R, Alais D). Ch 12, MIT Press. PDF
  69. Crick F, Koch C, Kreiman G, Fried I. (2004). Consciousness and Neurosurgery. Neurosurgery, 55:272-282. PDF PMID: 15271233
  70. Yeo G, Holste D, Kreiman G, Burge C. (2004). Variation in alternative splicing across human tissues. Genome Biology, 5:R74. PDF / RESOURCES PMID: 15461793
  71. Kreiman G. (2004). Neural coding: computational and biophysical perspectives. Physics of Life Reviews, 2:71-102. PDF
  72. Kreiman G. (2004). Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Research, 32:2889-2900. PDF/ RESOURCES PMID: 15155858
  73. Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB. (2004). A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences USA, 101:6062-6067. PDF SUPPLEMENTARY PDF / RESOURCES PMID: 15075390
  74. Kreiman G, Fried I, Koch C. (2002). Single neuron correlates of subjective vision in the human medial temporal lobe. Proceedings of the National Academy of Sciences USA, 99:8378-8383. PDF PMID: 12034865
  75. Rees G, Kreiman G, Koch C. (2002). Neural correlates of consciousness in humans. Nature Reviews Neuroscience, 3:261-270. PDF PMID: 11967556
  76. Krahe R, Kreiman G, Gabbiani F, Koch C, Metzner W. (2002). Stimulus encoding and feature extraction by multiple pyramidal cells in the hindbrain of weakly electric fish. Journal of Neuroscience, 22:2374-2382. PDF PMID: 11896176
  77. Zirlinger M, Kreiman G, Anderson D. (2001). Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid sub-nuclei. Proceedings of the National Academy of Sciences USA, 98:5270-5275. PDF PMID: 11320257
  78. Kreiman G. (2001). Moveo ergo sum. BioEssays, 23:662. PDF
  79. Kreiman G, Koch C, Fried I. (2000). Imagery neurons in the human brain. Nature, 408:357-361. PDF PMID: 11099042
  80. Kreiman G, Koch C, Fried I. (2000). Category-specific visual responses of single neurons in the human medial temporal lobe. Nature Neuroscience, 3:946-953. PDF PMID: 10966627
  81. Kreiman G, Krahe R, Metzner W, Koch C, Gabbiani F. (2000). Robustness and Variability of Neuronal Coding by Amplitude Sensitive Afferents in the Weakly Electric Fish Eigenmannia. Journal of Neurophysiology, 84:189-204. PDF PMID: 10899196
  82. Ouyang Y, Rosenstein A, Kreiman G, Schuman EM, Kennedy, MB. (1999). Tetanic stimulation leads to increased accumulation of Ca2+ calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons. Journal of Neuroscience, 19:7823-7833. PDF PMID: 1047968
  83. Inon de Iannino N, Briones G, Kreiman G, Ugalde, R. (1996). Characterization of the biosynthesis of betha(1-2) cyclc glucan in R. Freddii. Cellular and Molecular Biology, 42:617-629. PDF PMID: 8832091
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