Publications - Journals
- Gómez-Laberge C, Smolyanskaya A, Nassi J.J., Kreiman G, Born R.T. (2016). Bottom-up and Top-down Input Augment the Variability of Cortical Neurons, Neuron, 91, 540-547.
- Kreiman, G. (2016). A null model for cortical representations with grandmothers galore. Language, Cognition and Neuroscience, In Press.
- Tang S, Hemberg M, Cansizoglu E, Belin S, Kosik K, Kreiman G, Steen H, Steen J. (2016) f-divergence Cutoff Index to Simultaneously Identify Differential Expression in the Integrated Transcriptome and Proteome. Nucleic Acids Research, 44:e97. PDF.
- Tang H, Yu H, Chou C, Crone N, Madsen J, Anderson W, Kreiman G (2016) Cascade of neural processing orchestrates cognitive control in human frontal cortex. eLife 2016;5:e12352. PDF
- Miconi, T., Groomes, L., Kreiman, G (2015). There's Waldo! A Normalization Model of Visual Search Predicts Single-Trial Human Fixations in an Object Search Task. Cerebral Cortex 26(7), 3064-3082 PDF
- Singer JM, Madsen JR, Anderson WS, Kreiman G (2015). Sensitivity to Timing and Order in Human Visual Cortex. Journal of Neurophysiology 113:1656-1669. PDF
- Kim T-K, Hemberg M, Gray J. Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. In: Epigenetics. 2nd ed. Cold Springs Harbor Press; In Press.
- Madhavan R, Millman D, Tang H, Crone NE, Lenz F, Tierney T, Madsen JR, Kreiman G, Anderson WS. Decrease in gamma-band activity tracks sequence learning. Frontiers in Systems Neuroscience (2014).
- Prabakaran S,
Hemberg M, Chauhan R, Winter D, Tweedie-Cullen R, Dittrich C, Hong E, Gunawardena J, Steen H, Kreiman G, Steen JA (2014). Quantitative Profiling of Peptides from RNAs classified as non-coding. Nature Communications.5:5149. PDF
- Pinto, A. Fernandez, I. Peters, J. Mananaro, S. Vendrame, M. Prabhu, S. Loddenkemper, T. Kothare, S. Localization of sleep spindles, k-complexes, and vertex waves with subdural electrodes in children. Clinical Neurophysiology 4:367-74 (2014).
- Tang, H. Buia C, Madhavan R, Madsen J, Anderson W, Crone N, Kreiman G. Spatiotemporal dynamics underlying object completion in human ventral visual cortex. Neuron 83:736-748 (2014). PDF.
- Malik A,Vierbuchen T, Hemberg M, Rubin A, Ling E, Couch C, Stroud H, Spiegel I, Farh K, Harmin D, Greenberg M. (2014).Genome-wide identification and characterization of functional neuronal activity–dependent enhancers. Nature Neuroscience 1330-1339. PDF
- Nassi J, Gomez-Laberge C, Kreiman G, Born R (2014). Corticocortical
feedback increases the spatial extent of normalization. Frontiers in Systems Neuroscience 8:105. PDF
- Kim T, Hemberg M, Gray J (In Press). Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers. Invited essay for the Epigenetics textbook (2nd edition), Cold Spring Harbor Press.
- Singer J. and Kreiman G (2014). Short Temporal Asynchrony
Disrupts Visual Object Recognition. Journal of
Vision. 12:14. PDF
- Frost B, Hemberg M, Lewis J, Feany M (2014). Tau promotes neurodegeneration through global chromatin relaxation. Nature Neuroscience 17:357-366. PDF.
- Bansal A, Madhavan R, Agam Y, Golby A, Madsen J, Kreiman G (2014). Neural Dynamics Underlying Target Detection in the Human Brain. Journal of Neuroscience 34:3042-3055. PDF
- Kreiman G (2013). Mind the quantum? Trends in Cognitive Science, 17(3): 109. PDF
- Murugan, R and Kreiman, G (2012). Theory on the coupled stochastic dynamics of transcription and splice-site recognition. PLoS Computational Biology, 8:1-13, e1002747. PDF
- Bansal, A, Singer J, Anderon WS, Golby, A, Madsen JR, Kreiman G. Temporal stability of visually selective responses in intracranial field potentials recorded from human occipital and temporal lobes. Journal of Neurophysiology, 108:3073-3086. PDF
- Hemberg M, Gray JM, Cloonan N, Kuersten S, Grimmond S, Greenberg ME, Kreiman G (2012). Integrated genome analysis suggests that most conserved non-coding sequences are regulatory factor binding sites. Nucleic Acids Research 40:7858-7869. PDF PMID: 22684627
- Burbank KS, Kreiman GK (2012). Depression-Biased Reverse Plasticity Rule Is Required for Stable Learning at Top-Down Connections. PLoS Computational Biology 8:1-16. PDF PMID:22396630
- Bansal AK,Truccolo W, Vargas-Irwin CE, Donoghue J (2012). Decoding 3D reach and grasp from hybrid signals in motor and premotor cortices: spikes, multiunit activity, and local field potentials. Journal of Neurophysiology 107:1337-55. PDF PMID:22157115
- Ross SE, McCord AE, Jung C, Atan D, Mok SI, Hemberg M, Kim TK,Salogiannis J, Hu L, Cohen S, Lin Y, Harrar D, McInnes RR, Greenberg ME (2012). Bhlhb5 and prdm8 form a repressor complex involved in neuronal circuit assembly. Neuron 73: 292-303. PDF PMID:22284184
- Cohen S, Gabel HW, Hemberg M, Hutchinson AN, Sadacca LA, Ebert DH, Harmin DA, Greenberg RS, Verdine VK, Zhou Z, Wetsel WC, West AE, Greenberg ME (2011). Genome-wide activity-dependent MeCP2 phosphorylation regulates nervous system development and function. Neuron 72:72-85. PDFPMID: 21982370
- Tang H and Kreiman G. (2011). Face Recognition: Vision and Emotions beyond the Bubble. Current Biology 21:21. PDF PMID:22075428
- Kreiman G and Maunsell J. (2011). Nine criteria for a measure of scientific output. Frontiers in Computational Neuroscience 5:48. PDF PMID:22102840
- Kreiman G (2011). Literary inspiration. Nature 475:453-454. PDF
- Murugan R and Kreiman G. (2011) On the minimization of fluctuations in the response times of autoregulatory gene networks. Biophysical Journal 101:1297-1306 PDF PMID:21943410
- Hemberg M and Kreiman G (2011). Conservation of transcription factor binding events predicts gene expression across species. Nucleic Acids Research. 39: 7092-7102 PDF PMID:21622661
- Fried I, Mukamel R, Kreiman G. (2011). Internally Generated Preactivation of Single Neurons in Human Medial Frontal Cortex Predicts Volition. Neuron. 69: 548-562. PDF Video PMID: 21315264
- Anderson, WS and Kreiman, G. (2011). Neuroscience: What We Cannot Model, We Do Not Understand. Current Biology. 21: R124-R125. PDF PMID:21315264
- Chen, LL, Madhavan, R, Rapoport, B and Anderson, WS. (2011). A method for real-time cortical oscillation detection and phase-locked stimulation. Conf Proc IEE Eng Med Biol Soc 2011, 3087-3090. PDF PMID:22254992
- Pfenning AR, Kim TK, Spotts JM, Hemberg M, Su D, West AE (2010). Genome-wide identification of calcium-response factor (CaRF) binding sites predicts a role in regulation of neuronal signaling pathways. PLoS One 5(5):e10870.PDF PMID:20523734
- Blumberg, J., and Kreiman, G. (2010). How cortical neurons help us see: visual recognition in the human brain. Journal of Clinical Investigation 120:3054-3063. PDF PMID:20811161
- Agam Y, Liu H, Pappanastassiou A, Buia C, Golby AJ, Madsen JR, Kreiman, G. (2010). Robust selectivity to two-object images in human visual cortex. Current Biology 20:872-879. PDF Supplementary Information Web PMID:20417105
- Kim TK*, Hemberg M*, Gray JM*, Costa A, Bear DM, Wu J, Harmin DA, Laptewicz, M, Barbara-Haley K, Kuersten S, Markenscoff-Papadimitriou E, Kuhl D, Bito H, Worley PF, Kreiman G, Greenberg ME. (2010). Widespread transcription at thousands of enhancers during activity-dependent gene expression in neurons. (* = equal contribution) Nature 465:182-187.PDF. Supplementary Information. Web PMID:20393465
- Singer JM, Sheinberg DL (2010). Temporal cortex neurons encode articulated actions as slow sequences of integrated poses. Journal of Neuroscience 30, 3133-3145. PDF PMID:20181610
- Quian Quiroga R, Kreiman G (2010). Measuring sparseness in the brain. Psychological Review, 11:291-297. PDF PMID:20063978
- Stahlberg A, Bengtsson M, Hemberg M, Semb H (2009). Quantitative transcription factor analysis of undifferentiated single human embryonic stem cells. Clinical Chemistry 55(12): 2162-70. Epub 2009 Oct 8. PMID: 19815608.
- Liu H, Agam Y, Madsen J, Kreiman G. (2009) Timing, timing, timing: Fast decoding of object inforrmation from intracranial field potentials in human visual cortex. Neuron 62:281-290. PDF. Supplementary Information Web PMID:19409272
- Rasch M, Logothetis NK, Kreiman G (2009). From neurons to circuits: linear estimation of local field potentials. Journal of Neuroscience 29:13785-13796.PDF PMID:19889990
- Horng S, Kreiman G, Ellsworth C, Page D, Blank M, Milen K, Sur M (2009). Differential Gene Expression in the Developing Lateral Geniculate Nucleus and Medial Geniculate Nucleus Reveals Novel Roles for Zic4 and Foxp2 in Visual and Auditory Pathway Development. Journal of Neuroscience 29:13672-13683. PDF PMID:19864579
- Singer J, Kreiman G (2009). Toward unmasking the dynamics of visual perception. Neuron 64:446-447.PDF PMID:19945387
- Flavell SW, Kim TK, Gray JM, Harmin DA, Hemberg M, Hong EJ, Markenscoff-Papadimitriou E, Bear DM, Greenberg ME (2008). Genome-wide analysis of MEF2 transcriptional program reveals synaptic target genes and neuronal activity-dependent polyadenylation site selection. Neuron 60: 1022-1038.PDF PMID:19109909
- Meyers E, Freedman D, Kreiman G, Miller E, Poggio T (2008). Dynamic Population Coding of Category Information in ITC and PFC. Journal of Neurophysiology 100:1407-1419 PDF. Supplementary Information Web PMID:18562555
- Quian Quiroga R, Kreiman G, Koch C, Fried I (2008), Trends in Cognitive Science 12:87-91. PDF PMID:18262826
- Leamey C, Glendining K, Kreiman G, Kang N, Kuan H, Fassler R, Sawatari A, Tonegawa S, Sur M. (2008). Differential Gene Expression between Sensory Neocortical Areas: Potential Roles for Ten_m3 and Bcl6 in Patterning Visual and Somatosensory Pathways. Cerebral Cortex, 18:53-66. PDF PMID:17478416
- Kreiman G (2007). Single neuron approaches to human vision and memories. Current Opinion in Neurobiology, 17:471-475. PDF
- Serre T, Kreiman G, Kouh M, Cadieu C, Knoblich U, Poggio T (2007). A quantitative theory of immediate visual recognition. Progress In Brain Research 165C:33-56. PDFSupplementary Information PMID:17925239
- Kreiman G (2007) Brain science: from the very large to the very small. Current Biology 17:R768-R770. PDF PMID:17803929
- Tropea D, Kreiman G, Lyckman A, Mukherjee S, Yu H, Horng S, Sur M. (2006) Distinct gene systems mediating activity-dependent plasticity in visual cortex. Nature Neuroscience 9:660-668 PDF . Supplementary Information Web
- Kreiman G*, Hung C*, Quiroga R, Kraskov A, Poggio T., DiCarlo J. (2006). Object selectivity of local field potentials and spikes in the macaque inferior temporal cortex Neuron 49:433-445 (*=equal contribution) PDF .Supplementary Information Web PMID:16446146
- Hung C*, Kreiman G*, Poggio T, DiCarlo J. (2005) Fast read-out of object identity from macaque inferior temporal cortex. Science, 310:863-866. (*=equal contribution) PDF. Supplementary Information Web PMID:16272124
- Quian Quiroga R, Reddy L, Kreiman G, Koch C, Fried I (2005) Invariant visual representation by single neurons in the human brain. Nature, 435:1102-1107. PDF Supplementary Information PMID:15973409
- Crick F, Koch C, Kreiman G, Fried I (2004) Consciousness and Neurosurgery. Neurosurgery 55:272-282. PDF PMID: 15271233
- Yeo G, Holste D, Kreiman G, Burge C (2004). Variation in alternative splicing across human tissues. Genome Biology 5:R74. PDF Supplementary Information PMID: 15461793
- Kreiman G (2004). Neural coding: computational and biophysical perspectives. Physics of Life Reviews 2:71-102. PDF
- Kreiman G (2004) Identification of sparsely distributed clusters of cis-regulatory elements in sets of co-expressed genes. Nucleic Acids Research, 32:2889-2900. PDF Supplementary Information PMID: 15155858
- Su AI, Wiltshire T, Batalov S, Lapp H, Ching KA, Block D, Zhang J, Soden R, Hayakawa M, Kreiman G, Cooke MP, Walker JR, Hogenesch JB (2004) A gene atlas of the mouse and human protein-encoding transcriptomes. Proceedings of the National Academy of Sciences USA, 101:6062-6067. PDF. Supplementary Information. GNF Symatlas PMID: 15075390
- Kreiman G, Fried I , Koch C (2002) Single neuron correlates of subjective vision in the human medial temporal lobe. Proceedings of the National Academy of Sciences USA, 99:8378-8383. PDF PMID: 12034865
- Rees G, Kreiman G, Koch C (2002). Neural correlates of consciousness in humans. Nature Reviews Neuroscience, 3:261-270. PDF PMID: 11967556
- Krahe R, Kreiman G, Gabbiani F, Koch C, Metzner W (2002). Stimulus encoding and feature extraction by multiple pyramidal cells in the hindbrain of weakly electric fish. Journal of Neuroscience, 22:2374-2382. PDF PMID: 11896176
- Zirlinger M, Kreiman G, Anderson D (2001). Amygdala-enriched genes identified by microarray technology are restricted to specific amygdaloid sub-nuclei. Proceedings of the National Academy of Sciences USA, 98:5270-5275. PDF PMID: 11320257
- Kreiman G (2001), Moveo ergo sum. BioEssays. 23:662. PDF
- Kreiman G, Koch C, Fried I (2000). Imagery neurons in the human brain. Nature, 408:357-361. PDF PMID: 11099042
- Kreiman G, Koch C, Fried I (2000). Category-specific visual responses of single neurons in the human medial temporal lobe. Nature Neuroscience, 3:946-953. PDF PMID: 10966627
- Kreiman G, Krahe R, Metzner W, Koch C, Gabbiani F (2000). Robustness and Variability of Neuronal Coding by Amplitude Sensitive Afferents in the Weakly Electric Fish Eigenmannia. Journal of Neurophysiology, 84:189-204. PDF PMID: 10899196
- Ouyang Y, Rosenstein A, Kreiman G, Schuman EM, Kennedy, MB (1999). Tetanic stimulation leads to increased accumulation of Ca2+ calmodulin-dependent protein kinase II via dendritic protein synthesis in hippocampal neurons. Journal of Neuroscience, 19:7823-7833. PDF PMID: 1047968
- Inon de Iannino N, Briones G, Kreiman G, Ugalde, R (1996). Characterization of the biosynthesis of betha(1-2) cyclc glucan in R. Freddii. Cellular and Molecular Biology, 42:617-629. PDF PMID: 8832091
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